RNA–Protein interactions for RNA: ENST00000492280.5

HMGN1-220, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 5

Gene HMGN1, Length 2,707 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-220ENST00000492280 SCRT2Q9NQ03 307 aa9.45□□□□□ -0.9
HMGN1-220ENST00000492280 RPS20P60866 119 aaKnown RBP9.45□□□□□ -0.9
HMGN1-220ENST00000492280 SLC25A34Q6PIV7 304 aa9.45□□□□□ -0.9
HMGN1-220ENST00000492280 FBLL1A6NHQ2 334 aaKnown RBP9.44□□□□□ -0.9
HMGN1-220ENST00000492280 HBDP02042 147 aa9.44□□□□□ -0.9
HMGN1-220ENST00000492280 KRTAP10-9P60411 292 aa9.44□□□□□ -0.9
HMGN1-220ENST00000492280 KLK9Q2XQG4 91 aa9.44□□□□□ -0.9
HMGN1-220ENST00000492280 SPANXN1Q5VSR9 72 aa9.44□□□□□ -0.9
HMGN1-220ENST00000492280 RHPN1-AS1Q9BWJ2 59 aa9.44□□□□□ -0.9
HMGN1-220ENST00000492280 TTTY13Q9BZ97 58 aa9.44□□□□□ -0.9
HMGN1-220ENST00000492280 NPFFR1Q9GZQ6 430 aa9.44□□□□□ -0.9
HMGN1-220ENST00000492280 KLK9Q9UKQ9 250 aa9.44□□□□□ -0.9
HMGN1-220ENST00000492280 GOLT1BQ9Y3E0 138 aa9.44□□□□□ -0.9
HMGN1-220ENST00000492280 IGKV3-20P01619 116 aa9.44□□□□□ -0.9
HMGN1-220ENST00000492280 LEPP41159 167 aa9.44□□□□□ -0.9
HMGN1-220ENST00000492280 ST20Q9HBF5 79 aa9.44□□□□□ -0.9
HMGN1-220ENST00000492280 ITPR2Q14571 2701 aa9.43□□□□□ -0.9
HMGN1-220ENST00000492280 TCF21O43680 179 aa9.43□□□□□ -0.9
HMGN1-220ENST00000492280 RNASE4P34096 147 aaKnown RBP9.43□□□□□ -0.9
HMGN1-220ENST00000492280 RBAKDNA6NC62 111 aa9.43□□□□□ -0.9
HMGN1-220ENST00000492280 TMEM8BA6NDV4 472 aa9.43□□□□□ -0.9
HMGN1-220ENST00000492280 TGFAP01135 160 aa9.43□□□□□ -0.9
HMGN1-220ENST00000492280 S100A7P31151 101 aa9.43□□□□□ -0.9
HMGN1-220ENST00000492280 MRPS16Q9Y3D3 137 aaKnown RBP9.43□□□□□ -0.9
HMGN1-220ENST00000492280 NDUFA4O00483 81 aa9.42□□□□□ -0.9
HMGN1-220ENST00000492280 C9orf47Q6ZRZ4 202 aa9.42□□□□□ -0.9
HMGN1-220ENST00000492280 ZFAND2AQ8N6M9 145 aa9.42□□□□□ -0.9
HMGN1-220ENST00000492280 IFI27L1Q96BM0 104 aa9.42□□□□□ -0.9
HMGN1-220ENST00000492280 MAP1LC3AQ9H492 121 aa9.42□□□□□ -0.9
HMGN1-220ENST00000492280 B4DSR2 109 aa9.42□□□□□ -0.9
HMGN1-220ENST00000492280 RNF223E7ERA6 249 aa9.42□□□□□ -0.9
HMGN1-220ENST00000492280 NDUFS8O00217 210 aa9.42□□□□□ -0.9
HMGN1-220ENST00000492280 SOCS3O14543 225 aa9.42□□□□□ -0.9
HMGN1-220ENST00000492280 GNRH2O43555 120 aa9.42□□□□□ -0.9
HMGN1-220ENST00000492280 ZNF124Q15973 351 aa9.42□□□□□ -0.9
HMGN1-220ENST00000492280 C9orf139Q6ZV77 190 aa9.42□□□□□ -0.9
HMGN1-220ENST00000492280 MRPL52Q86TS9 123 aaKnown RBP9.42□□□□□ -0.9
HMGN1-220ENST00000492280 CNFNQ9BYD5 112 aa9.42□□□□□ -0.9
HMGN1-220ENST00000492280 CR1P17927 2039 aa9.42□□□□□ -0.9
HMGN1-220ENST00000492280 TMEM190Q8WZ59 177 aa9.41□□□□□ -0.9
HMGN1-220ENST00000492280 TMEM158Q8WZ71 300 aa9.41□□□□□ -0.9
HMGN1-220ENST00000492280 NMUP48645 174 aa9.41□□□□□ -0.9
HMGN1-220ENST00000492280 CRIP2P52943 208 aaPredicted RBP9.41□□□□□ -0.9
HMGN1-220ENST00000492280 ARL6IP6Q8N6S5 226 aa9.41□□□□□ -0.9
HMGN1-220ENST00000492280 ANXA2RQ3ZCQ2 193 aa9.4□□□□□ -0.9
HMGN1-220ENST00000492280 C2orf91Q6ZV80 131 aa9.4□□□□□ -0.9
HMGN1-220ENST00000492280 PCP2Q8IVA1 136 aa9.4□□□□□ -0.9
HMGN1-220ENST00000492280 CBY3A6NI87 242 aa9.4□□□□□ -0.9
HMGN1-220ENST00000492280 S100A4P26447 101 aaKnown RBP9.4□□□□□ -0.9
HMGN1-220ENST00000492280 SRSF1Q07955 248 aaKnown RBP eCLIP9.4□□□□□ -0.9
HMGN1-220ENST00000492280 C14orf178Q8N769 122 aaPredicted RBP9.4□□□□□ -0.9
HMGN1-220ENST00000492280 OR10J6PQ8NGY7 276 aa9.4□□□□□ -0.9
HMGN1-220ENST00000492280 RPL39LQ96EH5 51 aaKnown RBP9.4□□□□□ -0.9
HMGN1-220ENST00000492280 NEGR1Q7Z3B1 354 aa9.4□□□□□ -0.91
HMGN1-220ENST00000492280 IGLV1-40P01703 118 aa9.39□□□□□ -0.91
HMGN1-220ENST00000492280 MGPP08493 103 aa9.39□□□□□ -0.91
HMGN1-220ENST00000492280 ZNF688P0C7X2 276 aa9.39□□□□□ -0.91
HMGN1-220ENST00000492280 BVES-AS1Q5T3Y7 98 aa9.39□□□□□ -0.91
HMGN1-220ENST00000492280 NAA38Q9BRA0 125 aaKnown RBP9.39□□□□□ -0.91
HMGN1-220ENST00000492280 OR2K2Q8NGT1 345 aa9.39□□□□□ -0.91
HMGN1-220ENST00000492280 HELZ2Q9BYK8 2649 aaKnown RBP9.39□□□□□ -0.91
HMGN1-220ENST00000492280 JPT2Q9H910 190 aa9.39□□□□□ -0.91
HMGN1-220ENST00000492280 DAZ1Q9NQZ3 744 aaKnown RBP9.39□□□□□ -0.91
HMGN1-220ENST00000492280 BEX4Q9NWD9 120 aaPredicted RBP9.39□□□□□ -0.91
HMGN1-220ENST00000492280 TRAV12-2A0A075B6T6 113 aa9.38□□□□□ -0.91
HMGN1-220ENST00000492280 C7orf71A4D174 169 aa9.38□□□□□ -0.91
HMGN1-220ENST00000492280 CCL25O15444 150 aa9.38□□□□□ -0.91
HMGN1-220ENST00000492280 PRSS1P07477 247 aa9.38□□□□□ -0.91
HMGN1-220ENST00000492280 DEFB136Q30KP8 78 aa9.38□□□□□ -0.91
HMGN1-220ENST00000492280 NRACQ8N912 160 aa9.38□□□□□ -0.91
HMGN1-220ENST00000492280 FOXC2Q99958 501 aa9.38□□□□□ -0.91
HMGN1-220ENST00000492280 IGKV2D-26A0A0A0MRZ7 120 aa9.38□□□□□ -0.91
HMGN1-220ENST00000492280 COX8AP10176 69 aa9.38□□□□□ -0.91
HMGN1-220ENST00000492280 USMG5Q96IX5 58 aa9.38□□□□□ -0.91
HMGN1-220ENST00000492280 FGF6P10767 208 aa9.37□□□□□ -0.91
HMGN1-220ENST00000492280 COX6B1P14854 86 aa9.37□□□□□ -0.91
HMGN1-220ENST00000492280 SRSF2Q01130 221 aaKnown RBP9.37□□□□□ -0.91
HMGN1-220ENST00000492280 CFHR3Q02985 330 aa9.37□□□□□ -0.91
HMGN1-220ENST00000492280 C18orf65Q6ZTR6 163 aa9.37□□□□□ -0.91
HMGN1-220ENST00000492280 ZNF843Q8N446 348 aa9.37□□□□□ -0.91
HMGN1-220ENST00000492280 MRPL53Q96EL3 112 aaKnown RBP9.37□□□□□ -0.91
HMGN1-220ENST00000492280 COX11Q9Y6N1 276 aa9.37□□□□□ -0.91
HMGN1-220ENST00000492280 C2CD3Q4AC94 2353 aa9.37□□□□□ -0.91
HMGN1-220ENST00000492280 NOTCH2Q04721 2471 aa9.37□□□□□ -0.91
HMGN1-220ENST00000492280 K7EMI3 77 aa9.37□□□□□ -0.91
HMGN1-220ENST00000492280 CD5LO43866 347 aa9.37□□□□□ -0.91
HMGN1-220ENST00000492280 PEF1Q9UBV8 284 aaKnown RBP9.37□□□□□ -0.91
HMGN1-220ENST00000492280 IGLV2-18A0A075B6J9 118 aa9.36□□□□□ -0.91
HMGN1-220ENST00000492280 SYNJ2BPP57105 145 aa9.36□□□□□ -0.91
HMGN1-220ENST00000492280 LGALS9BQ3B8N2 356 aa9.36□□□□□ -0.91
HMGN1-220ENST00000492280 LGALS9CQ6DKI2 356 aa9.36□□□□□ -0.91
HMGN1-220ENST00000492280 DUX3Q96PT4 197 aa9.36□□□□□ -0.91
HMGN1-220ENST00000492280 PHLDA3Q9Y5J5 127 aa9.36□□□□□ -0.91
HMGN1-220ENST00000492280 NACAE9PAV3 2078 aa9.36□□□□□ -0.91
HMGN1-220ENST00000492280 A0A096LNT2 108 aa9.36□□□□□ -0.91
HMGN1-220ENST00000492280 TRAV12-3A0A0B4J271 114 aa9.36□□□□□ -0.91
HMGN1-220ENST00000492280 PSMG4Q5JS54 123 aa9.36□□□□□ -0.91
HMGN1-220ENST00000492280 SMIM15Q7Z3B0 74 aa9.36□□□□□ -0.91
HMGN1-220ENST00000492280 SMPXQ9UHP9 88 aa9.36□□□□□ -0.91
HMGN1-220ENST00000492280 K7EP13 123 aa9.35□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms