RNA–Protein interactions for RNA: ENST00000491552.1

MSH5-SAPCD1-206, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

TSL 3

Gene MSH5-SAPCD1, Length 706 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-206ENST00000491552 Q6ZTI0 123 aa11.5□□□□□ -0.57
MSH5-SAPCD1-206ENST00000491552 TRGV1A0A0A0MS02 117 aa11.49□□□□□ -0.57
MSH5-SAPCD1-206ENST00000491552 SCO2A0A1W2PP80 73 aa11.49□□□□□ -0.57
MSH5-SAPCD1-206ENST00000491552 F5H768 121 aa11.49□□□□□ -0.57
MSH5-SAPCD1-206ENST00000491552 SPINK4O60575 86 aa11.49□□□□□ -0.57
MSH5-SAPCD1-206ENST00000491552 TMEM88Q6PEY1 159 aa11.49□□□□□ -0.57
MSH5-SAPCD1-206ENST00000491552 ALKAL2Q6UX46 152 aa11.49□□□□□ -0.57
MSH5-SAPCD1-206ENST00000491552 KCNS1Q96KK3 526 aa11.49□□□□□ -0.57
MSH5-SAPCD1-206ENST00000491552 SDF2L1Q9HCN8 221 aa11.49□□□□□ -0.57
MSH5-SAPCD1-206ENST00000491552 MDFICQ9P1T7 246 aa11.49□□□□□ -0.57
MSH5-SAPCD1-206ENST00000491552 ALMS1Q8TCU4 4167 aa11.49□□□□□ -0.57
MSH5-SAPCD1-206ENST00000491552 TRBV6-1A0A0K0K1D8 114 aa11.48□□□□□ -0.57
MSH5-SAPCD1-206ENST00000491552 LGALS9CQ6DKI2 356 aa11.48□□□□□ -0.57
MSH5-SAPCD1-206ENST00000491552 ZFP30Q9Y2G7 519 aa11.48□□□□□ -0.57
MSH5-SAPCD1-206ENST00000491552 BOLA1Q9Y3E2 137 aa11.48□□□□□ -0.57
MSH5-SAPCD1-206ENST00000491552 TRGV2A0A075B6R0 118 aa11.47□□□□□ -0.57
MSH5-SAPCD1-206ENST00000491552 GNRH2O43555 120 aa11.47□□□□□ -0.57
MSH5-SAPCD1-206ENST00000491552 IFNA1P01562 189 aa11.47□□□□□ -0.57
MSH5-SAPCD1-206ENST00000491552 TYMSP04818 313 aa11.47□□□□□ -0.57
MSH5-SAPCD1-206ENST00000491552 LGALS9BQ3B8N2 356 aa11.47□□□□□ -0.57
MSH5-SAPCD1-206ENST00000491552 MRPL16Q9NX20 251 aaKnown RBP11.47□□□□□ -0.57
MSH5-SAPCD1-206ENST00000491552 IGHV3-16A0A0C4DH30 117 aa11.46□□□□□ -0.57
MSH5-SAPCD1-206ENST00000491552 LTAP01374 205 aa11.46□□□□□ -0.57
MSH5-SAPCD1-206ENST00000491552 S100A9P06702 114 aaKnown RBP11.46□□□□□ -0.57
MSH5-SAPCD1-206ENST00000491552 C18orf15Q96N68 181 aa11.46□□□□□ -0.57
MSH5-SAPCD1-206ENST00000491552 TXNDC17Q9BRA2 123 aa11.46□□□□□ -0.57
MSH5-SAPCD1-206ENST00000491552 SPXQ9BT56 116 aa11.46□□□□□ -0.57
MSH5-SAPCD1-206ENST00000491552 C11orf21Q9P2W6 132 aa11.46□□□□□ -0.57
MSH5-SAPCD1-206ENST00000491552 SACSQ9NZJ4 4579 aa11.46□□□□□ -0.58
MSH5-SAPCD1-206ENST00000491552 FABP5P3A8MUU1 101 aa11.45□□□□□ -0.58
MSH5-SAPCD1-206ENST00000491552 COX8CQ7Z4L0 72 aa11.45□□□□□ -0.58
MSH5-SAPCD1-206ENST00000491552 C15orf53Q8NAA6 179 aa11.45□□□□□ -0.58
MSH5-SAPCD1-206ENST00000491552 ZC2HC1AQ96GY0 325 aa11.45□□□□□ -0.58
MSH5-SAPCD1-206ENST00000491552 BLOC1S1P78537 153 aa11.44□□□□□ -0.58
MSH5-SAPCD1-206ENST00000491552 C11orf52Q96A22 123 aa11.44□□□□□ -0.58
MSH5-SAPCD1-206ENST00000491552 BCL2P10415 239 aa11.43□□□□□ -0.58
MSH5-SAPCD1-206ENST00000491552 HOXA5P20719 270 aa11.43□□□□□ -0.58
MSH5-SAPCD1-206ENST00000491552 MEF2BQ02080 365 aaPredicted RBP11.43□□□□□ -0.58
MSH5-SAPCD1-206ENST00000491552 OR5I1Q13606 314 aa11.43□□□□□ -0.58
MSH5-SAPCD1-206ENST00000491552 M0R2P5 195 aa11.42□□□□□ -0.58
MSH5-SAPCD1-206ENST00000491552 SH2D1AO60880 128 aa11.42□□□□□ -0.58
MSH5-SAPCD1-206ENST00000491552 P0DMU3 169 aa11.42□□□□□ -0.58
MSH5-SAPCD1-206ENST00000491552 FAM231AP0DMU4 169 aa11.42□□□□□ -0.58
MSH5-SAPCD1-206ENST00000491552 FAM231CP0DMU5 169 aa11.42□□□□□ -0.58
MSH5-SAPCD1-206ENST00000491552 TAGLN2P37802 199 aaKnown RBP11.42□□□□□ -0.58
MSH5-SAPCD1-206ENST00000491552 CRIP1P50238 77 aa11.42□□□□□ -0.58
MSH5-SAPCD1-206ENST00000491552 FAM162BQ5T6X4 162 aa11.42□□□□□ -0.58
MSH5-SAPCD1-206ENST00000491552 RASL10AQ92737 203 aa11.42□□□□□ -0.58
MSH5-SAPCD1-206ENST00000491552 VAX2Q9UIW0 290 aa11.42□□□□□ -0.58
MSH5-SAPCD1-206ENST00000491552 DNAH1Q9P2D7 4330 aa11.42□□□□□ -0.58
MSH5-SAPCD1-206ENST00000491552 RYR3Q15413 4870 aa11.42□□□□□ -0.58
MSH5-SAPCD1-206ENST00000491552 IGKV3D-20A0A0C4DH25 116 aa11.41□□□□□ -0.58
MSH5-SAPCD1-206ENST00000491552 PDE6DO43924 150 aa11.41□□□□□ -0.58
MSH5-SAPCD1-206ENST00000491552 RPL35P42766 123 aaKnown RBP11.41□□□□□ -0.58
MSH5-SAPCD1-206ENST00000491552 ZNF674Q2M3X9 581 aa11.41□□□□□ -0.58
MSH5-SAPCD1-206ENST00000491552 BAGE2Q86Y30 109 aa11.41□□□□□ -0.58
MSH5-SAPCD1-206ENST00000491552 NHLRC2Q8NBF2 726 aa11.41□□□□□ -0.58
MSH5-SAPCD1-206ENST00000491552 RYR2Q92736 4967 aa11.4□□□□□ -0.58
MSH5-SAPCD1-206ENST00000491552 TRAV26-1A0A087WT03 109 aa11.4□□□□□ -0.58
MSH5-SAPCD1-206ENST00000491552 B4DEV8 164 aa11.4□□□□□ -0.58
MSH5-SAPCD1-206ENST00000491552 NUDT3O95989 172 aa11.4□□□□□ -0.58
MSH5-SAPCD1-206ENST00000491552 IGHV3-53P01767 116 aa11.4□□□□□ -0.58
MSH5-SAPCD1-206ENST00000491552 ORM1P02763 201 aa11.4□□□□□ -0.58
MSH5-SAPCD1-206ENST00000491552 C9orf85Q96MD7 179 aa11.4□□□□□ -0.58
MSH5-SAPCD1-206ENST00000491552 DERL1Q9BUN8 251 aa11.4□□□□□ -0.58
MSH5-SAPCD1-206ENST00000491552 MLST8Q9BVC4 326 aa11.4□□□□□ -0.58
MSH5-SAPCD1-206ENST00000491552 A0A0J9YY99 117 aa11.39□□□□□ -0.59
MSH5-SAPCD1-206ENST00000491552 M0R036 132 aa11.39□□□□□ -0.59
MSH5-SAPCD1-206ENST00000491552 RNASE3P12724 160 aaKnown RBP11.39□□□□□ -0.59
MSH5-SAPCD1-206ENST00000491552 S100A4P26447 101 aaKnown RBP11.39□□□□□ -0.59
MSH5-SAPCD1-206ENST00000491552 ASIPP42127 132 aa11.39□□□□□ -0.59
MSH5-SAPCD1-206ENST00000491552 LYPD6BQ8NI32 183 aa11.39□□□□□ -0.59
MSH5-SAPCD1-206ENST00000491552 KRBOX1C9JBD0 128 aa11.38□□□□□ -0.59
MSH5-SAPCD1-206ENST00000491552 H3BNG1 76 aa11.38□□□□□ -0.59
MSH5-SAPCD1-206ENST00000491552 LINC01559Q495D7 138 aa11.38□□□□□ -0.59
MSH5-SAPCD1-206ENST00000491552 UBE2DNLQ8IWF7 75 aa11.38□□□□□ -0.59
MSH5-SAPCD1-206ENST00000491552 TRAV4A0A0B4J268 109 aa11.37□□□□□ -0.59
MSH5-SAPCD1-206ENST00000491552 SFTA3P0C7M3 94 aa11.37□□□□□ -0.59
MSH5-SAPCD1-206ENST00000491552 CENPWQ5EE01 88 aa11.37□□□□□ -0.59
MSH5-SAPCD1-206ENST00000491552 POM121L12Q8N7R1 296 aa11.37□□□□□ -0.59
MSH5-SAPCD1-206ENST00000491552 MED9Q9NWA0 146 aa11.37□□□□□ -0.59
MSH5-SAPCD1-206ENST00000491552 TRGV4A0A0C4DH28 118 aa11.36□□□□□ -0.59
MSH5-SAPCD1-206ENST00000491552 RBFOX3A6NFN3 312 aa11.36□□□□□ -0.59
MSH5-SAPCD1-206ENST00000491552 C9JCJ5 164 aa11.36□□□□□ -0.59
MSH5-SAPCD1-206ENST00000491552 SLAQ13239 276 aa11.36□□□□□ -0.59
MSH5-SAPCD1-206ENST00000491552 FHL2Q14192 279 aa11.36□□□□□ -0.59
MSH5-SAPCD1-206ENST00000491552 ZNF876PQ49A33 203 aa11.36□□□□□ -0.59
MSH5-SAPCD1-206ENST00000491552 DNLZQ5SXM8 178 aa11.36□□□□□ -0.59
MSH5-SAPCD1-206ENST00000491552 PRR27Q6MZM9 219 aa11.36□□□□□ -0.59
MSH5-SAPCD1-206ENST00000491552 OR4C5Q8NGB2 326 aa11.36□□□□□ -0.59
MSH5-SAPCD1-206ENST00000491552 PTH2Q96A98 100 aa11.36□□□□□ -0.59
MSH5-SAPCD1-206ENST00000491552 ZNF479Q96JC4 524 aa11.36□□□□□ -0.59
MSH5-SAPCD1-206ENST00000491552 TMSB15BA0A087X1C1 80 aa11.35□□□□□ -0.59
MSH5-SAPCD1-206ENST00000491552 GRIFINA4D1Z8 144 aa11.35□□□□□ -0.59
MSH5-SAPCD1-206ENST00000491552 PGPEP1LA6NFU8 196 aa11.35□□□□□ -0.59
MSH5-SAPCD1-206ENST00000491552 H3BVH4 76 aa11.35□□□□□ -0.59
MSH5-SAPCD1-206ENST00000491552 PAX4O43316 350 aa11.35□□□□□ -0.59
MSH5-SAPCD1-206ENST00000491552 GNG4P50150 75 aa11.35□□□□□ -0.59
MSH5-SAPCD1-206ENST00000491552 RNF212Q495C1 297 aa11.35□□□□□ -0.59
MSH5-SAPCD1-206ENST00000491552 ZNF506Q5JVG8 444 aa11.35□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 91.2 ms