RNA–Protein interactions for RNA: ENST00000491429.1

SCN1A-206, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 542 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-206ENST00000491429 FXYD1O00168 92 aa0.08□□□□□ -2.4
SCN1A-206ENST00000491429 GNG10P50151 68 aa0.08□□□□□ -2.4
SCN1A-206ENST00000491429 ASB16-AS1Q495Z4 193 aa0.08□□□□□ -2.4
SCN1A-206ENST00000491429 PPP1R2P3Q6NXS1 205 aa0.08□□□□□ -2.4
SCN1A-206ENST00000491429 HRCT1Q6UXD1 115 aa0.08□□□□□ -2.4
SCN1A-206ENST00000491429 CCDC32Q9BV29 185 aa0.08□□□□□ -2.4
SCN1A-206ENST00000491429 BOD1L1Q8NFC6 3051 aa0.08□□□□□ -2.4
SCN1A-206ENST00000491429 SPTBP11277 2137 aa0.08□□□□□ -2.4
SCN1A-206ENST00000491429 CTTNBP2Q8WZ74 1663 aa0.08□□□□□ -2.4
SCN1A-206ENST00000491429 DSPP15924 2871 aaKnown RBP0.08□□□□□ -2.4
SCN1A-206ENST00000491429 BCORL1Q5H9F3 1711 aa0.07□□□□□ -2.4
SCN1A-206ENST00000491429 PCNTO95613 3336 aa0.07□□□□□ -2.4
SCN1A-206ENST00000491429 ATRQ13535 2644 aa0.07□□□□□ -2.4
SCN1A-206ENST00000491429 MKI67P46013 3256 aaKnown RBP0.07□□□□□ -2.4
SCN1A-206ENST00000491429 TRAV13-1A0A0B4J241 112 aa0.07□□□□□ -2.4
SCN1A-206ENST00000491429 NBDYA0A0U1RRE5 68 aa0.07□□□□□ -2.4
SCN1A-206ENST00000491429 H3BMG7 143 aa0.07□□□□□ -2.4
SCN1A-206ENST00000491429 CDC42EP2O14613 210 aa0.07□□□□□ -2.4
SCN1A-206ENST00000491429 EDF1O60869 148 aaKnown RBP0.07□□□□□ -2.4
SCN1A-206ENST00000491429 IL7P13232 177 aa0.07□□□□□ -2.4
SCN1A-206ENST00000491429 DNAJB13P59910 316 aa0.07□□□□□ -2.4
SCN1A-206ENST00000491429 RPL37P61927 97 aaKnown RBP0.07□□□□□ -2.4
SCN1A-206ENST00000491429 C5orf56Q8N8D9 126 aa0.07□□□□□ -2.4
SCN1A-206ENST00000491429 MRPL35Q9NZE8 188 aaKnown RBP0.07□□□□□ -2.4
SCN1A-206ENST00000491429 MPC1Q9Y5U8 109 aa0.07□□□□□ -2.4
SCN1A-206ENST00000491429 UTP20O75691 2785 aaKnown RBP0.07□□□□□ -2.4
SCN1A-206ENST00000491429 UBR5O95071 2799 aaPredicted RBP0.06□□□□□ -2.4
SCN1A-206ENST00000491429 FAT3Q8TDW7 4589 aa0.06□□□□□ -2.4
SCN1A-206ENST00000491429 AKAP13Q12802 2813 aa0.06□□□□□ -2.4
SCN1A-206ENST00000491429 GVINP1Q7Z2Y8 2422 aa0.06□□□□□ -2.4
SCN1A-206ENST00000491429 NBPF19A0A087WUL8 3843 aa0.06□□□□□ -2.4
SCN1A-206ENST00000491429 TRAV16A0A0A6YYK6 109 aaPredicted RBP0.06□□□□□ -2.4
SCN1A-206ENST00000491429 TMEM30CPA0ZSE6 113 aa0.06□□□□□ -2.4
SCN1A-206ENST00000491429 E5RI56 91 aa0.06□□□□□ -2.4
SCN1A-206ENST00000491429 IGKCP01834 107 aa0.06□□□□□ -2.4
SCN1A-206ENST00000491429 SLC25A4P12235 298 aa0.06□□□□□ -2.4
SCN1A-206ENST00000491429 GTF2A1P52655 376 aaPredicted RBP0.06□□□□□ -2.4
SCN1A-206ENST00000491429 IQCJQ1A5X6 159 aa0.06□□□□□ -2.4
SCN1A-206ENST00000491429 TMEM78Q5T7P6 136 aa0.06□□□□□ -2.4
SCN1A-206ENST00000491429 MORN4Q8NDC4 146 aa0.06□□□□□ -2.4
SCN1A-206ENST00000491429 OR8J3Q8NGG0 315 aa0.06□□□□□ -2.4
SCN1A-206ENST00000491429 OR51A4Q8NGJ6 313 aa0.06□□□□□ -2.4
SCN1A-206ENST00000491429 LXNQ9BS40 222 aa0.06□□□□□ -2.4
SCN1A-206ENST00000491429 PCBD2Q9H0N5 130 aa0.06□□□□□ -2.4
SCN1A-206ENST00000491429 TGP01266 2768 aa0.06□□□□□ -2.4
SCN1A-206ENST00000491429 UNC80Q8N2C7 3258 aa0.06□□□□□ -2.4
SCN1A-206ENST00000491429 SYNMO15061 1565 aa0.06□□□□□ -2.4
SCN1A-206ENST00000491429 OTOGQ6ZRI0 2925 aa0.06□□□□□ -2.4
SCN1A-206ENST00000491429 ADGBQ8N7X0 1667 aa0.05□□□□□ -2.4
SCN1A-206ENST00000491429 VCANP13611 3396 aa0.05□□□□□ -2.4
SCN1A-206ENST00000491429 EP400Q96L91 3159 aa0.05□□□□□ -2.4
SCN1A-206ENST00000491429 TCOF1Q13428 1488 aaKnown RBP0.05□□□□□ -2.4
SCN1A-206ENST00000491429 A0A1W2PRE2 83 aa0.05□□□□□ -2.4
SCN1A-206ENST00000491429 TMEM189A5PLL7 270 aa0.05□□□□□ -2.4
SCN1A-206ENST00000491429 HIGD1CA8MV81 97 aa0.05□□□□□ -2.4
SCN1A-206ENST00000491429 M0QZK8 103 aa0.05□□□□□ -2.4
SCN1A-206ENST00000491429 PFDN1O60925 122 aa0.05□□□□□ -2.4
SCN1A-206ENST00000491429 CRYGSP22914 178 aa0.05□□□□□ -2.4
SCN1A-206ENST00000491429 BLCAPP62952 87 aa0.05□□□□□ -2.4
SCN1A-206ENST00000491429 TRAPPC2LQ9UL33 140 aa0.05□□□□□ -2.4
SCN1A-206ENST00000491429 RELNP78509 3460 aa0.05□□□□□ -2.4
SCN1A-206ENST00000491429 NBEAL1Q6ZS30 2694 aa0.05□□□□□ -2.4
SCN1A-206ENST00000491429 FLNCQ14315 2725 aa0.05□□□□□ -2.4
SCN1A-206ENST00000491429 MYH2Q9UKX2 1941 aa0.05□□□□□ -2.4
SCN1A-206ENST00000491429 TLN1Q9Y490 2541 aaKnown RBP0.05□□□□□ -2.4
SCN1A-206ENST00000491429 MAP1AP78559 2803 aaPredicted RBP0.05□□□□□ -2.4
SCN1A-206ENST00000491429 CACNA1HO95180 2353 aa0.04□□□□□ -2.4
SCN1A-206ENST00000491429 IGF2RP11717 2491 aa0.04□□□□□ -2.4
SCN1A-206ENST00000491429 TPST1O60507 370 aa0.04□□□□□ -2.4
SCN1A-206ENST00000491429 IGF2P01344 180 aa0.04□□□□□ -2.4
SCN1A-206ENST00000491429 CCSMST1Q4G0I0 132 aa0.04□□□□□ -2.4
SCN1A-206ENST00000491429 LYPD5Q6UWN5 251 aa0.04□□□□□ -2.4
SCN1A-206ENST00000491429 SMIM7Q9BQ49 75 aa0.04□□□□□ -2.4
SCN1A-206ENST00000491429 MED31Q9Y3C7 131 aa0.04□□□□□ -2.4
SCN1A-206ENST00000491429 KALRNO60229 2985 aa0.04□□□□□ -2.4
SCN1A-206ENST00000491429 CELSR1Q9NYQ6 3014 aa0.04□□□□□ -2.4
SCN1A-206ENST00000491429 ROCK1Q13464 1354 aa0.04□□□□□ -2.4
SCN1A-206ENST00000491429 FAM135BQ49AJ0 1406 aa0.04□□□□□ -2.4
SCN1A-206ENST00000491429 PRRC2CQ9Y520 2896 aaKnown RBP0.04□□□□□ -2.4
SCN1A-206ENST00000491429 DCHS1Q96JQ0 3298 aa0.04□□□□□ -2.4
SCN1A-206ENST00000491429 KNTC1P50748 2209 aa0.03□□□□□ -2.4
SCN1A-206ENST00000491429 STARD9Q9P2P6 4700 aa0.03□□□□□ -2.4
SCN1A-206ENST00000491429 IFITM5A6NNB3 132 aa0.03□□□□□ -2.4
SCN1A-206ENST00000491429 E7EQ34 232 aa0.03□□□□□ -2.4
SCN1A-206ENST00000491429 ETV6P41212 452 aa0.03□□□□□ -2.4
SCN1A-206ENST00000491429 LRP2P98164 4655 aa0.03□□□□□ -2.4
SCN1A-206ENST00000491429 DEFB132Q7Z7B7 95 aa0.03□□□□□ -2.4
SCN1A-206ENST00000491429 BRK1Q8WUW1 75 aa0.03□□□□□ -2.4
SCN1A-206ENST00000491429 THEM6Q8WUY1 208 aa0.03□□□□□ -2.4
SCN1A-206ENST00000491429 C19orf12Q9NSK7 152 aa0.03□□□□□ -2.4
SCN1A-206ENST00000491429 CBLN4Q9NTU7 201 aa0.03□□□□□ -2.4
SCN1A-206ENST00000491429 ATPIF1Q9UII2 106 aa0.03□□□□□ -2.4
SCN1A-206ENST00000491429 CFAP46Q8IYW2 2715 aa0.03□□□□□ -2.4
SCN1A-206ENST00000491429 PKD1L1Q8TDX9 2849 aa0.03□□□□□ -2.41
SCN1A-206ENST00000491429 USP54Q70EL1 1684 aa0.02□□□□□ -2.41
SCN1A-206ENST00000491429 MTORP42345 2549 aa0.02□□□□□ -2.41
SCN1A-206ENST00000491429 A0A0G2JMM0 328 aa0.02□□□□□ -2.41
SCN1A-206ENST00000491429 TRBV7-6A0A0J9YX20 115 aa0.02□□□□□ -2.41
SCN1A-206ENST00000491429 LOC107984640A0A0U1RRK4 108 aa0.02□□□□□ -2.41
SCN1A-206ENST00000491429 FAM107AO95990 144 aa0.02□□□□□ -2.41
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms