RNA–Protein interactions for RNA: ENST00000489861.2

COL9A1-209, Transcript of collagen type IX alpha 1 chain, humanhuman

TSL 3

Gene COL9A1, Length 243 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-209ENST00000489861 SIX6O95475 246 aa4.89□□□□□ -1.63
COL9A1-209ENST00000489861 MBP02144 154 aa4.89□□□□□ -1.63
COL9A1-209ENST00000489861 C1QBP02746 253 aa4.89□□□□□ -1.63
COL9A1-209ENST00000489861 PRM2P04554 102 aa4.89□□□□□ -1.63
COL9A1-209ENST00000489861 PYYP10082 97 aa4.89□□□□□ -1.63
COL9A1-209ENST00000489861 EVI2AP22794 236 aa4.89□□□□□ -1.63
COL9A1-209ENST00000489861 RNASE4P34096 147 aaKnown RBP4.89□□□□□ -1.63
COL9A1-209ENST00000489861 FFAR4Q5NUL3 377 aa4.89□□□□□ -1.63
COL9A1-209ENST00000489861 FAM122CQ6P4D5 195 aa4.89□□□□□ -1.63
COL9A1-209ENST00000489861 TMED6Q8WW62 240 aa4.89□□□□□ -1.63
COL9A1-209ENST00000489861 ST6GAL2Q96JF0 529 aa4.89□□□□□ -1.63
COL9A1-209ENST00000489861 VGLL1Q99990 258 aa4.89□□□□□ -1.63
COL9A1-209ENST00000489861 SPXQ9BT56 116 aa4.89□□□□□ -1.63
COL9A1-209ENST00000489861 SLC25A2Q9BXI2 301 aa4.89□□□□□ -1.63
COL9A1-209ENST00000489861 OR5AC2Q9NZP5 309 aa4.89□□□□□ -1.63
COL9A1-209ENST00000489861 ZNF492Q9P255 531 aa4.89□□□□□ -1.63
COL9A1-209ENST00000489861 IGHV1OR15-1A0A075B7D0 117 aa4.88□□□□□ -1.63
COL9A1-209ENST00000489861 TRGV4A0A0C4DH28 118 aa4.88□□□□□ -1.63
COL9A1-209ENST00000489861 FBLL1A6NHQ2 334 aaKnown RBP4.88□□□□□ -1.63
COL9A1-209ENST00000489861 C9JCJ5 164 aa4.88□□□□□ -1.63
COL9A1-209ENST00000489861 PRAC2D3DTV9 90 aa4.88□□□□□ -1.63
COL9A1-209ENST00000489861 M0R3E3 92 aa4.88□□□□□ -1.63
COL9A1-209ENST00000489861 SPINK4O60575 86 aa4.88□□□□□ -1.63
COL9A1-209ENST00000489861 NDUFB4O95168 129 aa4.88□□□□□ -1.63
COL9A1-209ENST00000489861 PTTG1O95997 202 aa4.88□□□□□ -1.63
COL9A1-209ENST00000489861 SNRPCP09234 159 aaKnown RBP4.88□□□□□ -1.63
COL9A1-209ENST00000489861 SRIP30626 198 aa4.88□□□□□ -1.63
COL9A1-209ENST00000489861 H2BFSP57053 126 aa4.88□□□□□ -1.63
COL9A1-209ENST00000489861 FAM159AQ6UWV7 190 aa4.88□□□□□ -1.63
COL9A1-209ENST00000489861 MIR17HGQ75NE6 70 aa4.88□□□□□ -1.63
COL9A1-209ENST00000489861 NEGR1Q7Z3B1 354 aa4.88□□□□□ -1.63
COL9A1-209ENST00000489861 EXOC3-AS1Q8N2X6 119 aa4.88□□□□□ -1.63
COL9A1-209ENST00000489861 FAM19A4Q96LR4 140 aa4.88□□□□□ -1.63
COL9A1-209ENST00000489861 NDFIP1Q9BT67 221 aa4.88□□□□□ -1.63
COL9A1-209ENST00000489861 AGPAT4-IT1Q9H0P7 198 aa4.88□□□□□ -1.63
COL9A1-209ENST00000489861 TMPRSS5Q9H3S3 457 aa4.88□□□□□ -1.63
COL9A1-209ENST00000489861 OTORQ9NRC9 128 aa4.88□□□□□ -1.63
COL9A1-209ENST00000489861 LY96Q9Y6Y9 160 aa4.88□□□□□ -1.63
COL9A1-209ENST00000489861 A0A096LPF7 62 aa4.87□□□□□ -1.63
COL9A1-209ENST00000489861 KRTAP4-8A0A0G2JLE6 195 aa4.87□□□□□ -1.63
COL9A1-209ENST00000489861 LRCOL1A6NCL2 159 aa4.87□□□□□ -1.63
COL9A1-209ENST00000489861 RS1O15537 224 aa4.87□□□□□ -1.63
COL9A1-209ENST00000489861 ZNF324O75467 553 aaPredicted RBP4.87□□□□□ -1.63
COL9A1-209ENST00000489861 OR10J4P0C629 311 aa4.87□□□□□ -1.63
COL9A1-209ENST00000489861 RANP62826 216 aaKnown RBP4.87□□□□□ -1.63
COL9A1-209ENST00000489861 SERF2P84101 59 aa4.87□□□□□ -1.63
COL9A1-209ENST00000489861 ERCC8Q13216 396 aa4.87□□□□□ -1.63
COL9A1-209ENST00000489861 BTN1A1Q13410 526 aa4.87□□□□□ -1.63
COL9A1-209ENST00000489861 Q6ZTI0 123 aa4.87□□□□□ -1.63
COL9A1-209ENST00000489861 SCXQ7RTU7 201 aa4.87□□□□□ -1.63
COL9A1-209ENST00000489861 INO80EQ8NBZ0 244 aaPredicted RBP4.87□□□□□ -1.63
COL9A1-209ENST00000489861 NTN5Q8WTR8 489 aaPredicted RBP4.87□□□□□ -1.63
COL9A1-209ENST00000489861 FXYD5Q96DB9 178 aa4.87□□□□□ -1.63
COL9A1-209ENST00000489861 DAZAP1Q96EP5 407 aaKnown RBP4.87□□□□□ -1.63
COL9A1-209ENST00000489861 KCNS1Q96KK3 526 aa4.87□□□□□ -1.63
COL9A1-209ENST00000489861 FAM167A-AS1Q96KT0 104 aa4.87□□□□□ -1.63
COL9A1-209ENST00000489861 MED28Q9H204 178 aa4.87□□□□□ -1.63
COL9A1-209ENST00000489861 GSN-AS1Q9NRJ2 163 aa4.87□□□□□ -1.63
COL9A1-209ENST00000489861 MBD2Q9UBB5 411 aa4.87□□□□□ -1.63
COL9A1-209ENST00000489861 HHLA3Q9XRX5 114 aa4.87□□□□□ -1.63
COL9A1-209ENST00000489861 IGKV2-40A0A087WW87 121 aaPredicted RBP4.86□□□□□ -1.63
COL9A1-209ENST00000489861 BORCS7-ASMTA0A0B4J1R7 106 aa4.86□□□□□ -1.63
COL9A1-209ENST00000489861 TRAV21A0A0B4J279 112 aa4.86□□□□□ -1.63
COL9A1-209ENST00000489861 PGPA6NDG6 321 aa4.86□□□□□ -1.63
COL9A1-209ENST00000489861 DIRC3C9JPN6 131 aa4.86□□□□□ -1.63
COL9A1-209ENST00000489861 H0YIZ8 118 aa4.86□□□□□ -1.63
COL9A1-209ENST00000489861 NXPH4O95158 308 aa4.86□□□□□ -1.63
COL9A1-209ENST00000489861 GHRHP01286 108 aa4.86□□□□□ -1.63
COL9A1-209ENST00000489861 IGKV2D-40P01614 121 aaPredicted RBP4.86□□□□□ -1.63
COL9A1-209ENST00000489861 HOXA5P20719 270 aa4.86□□□□□ -1.63
COL9A1-209ENST00000489861 IFITM3Q01628 133 aa4.86□□□□□ -1.63
COL9A1-209ENST00000489861 ZFP69Q49AA0 526 aa4.86□□□□□ -1.63
COL9A1-209ENST00000489861 GCSAMLQ5JQS6 135 aa4.86□□□□□ -1.63
COL9A1-209ENST00000489861 IQCF2Q8IXL9 164 aa4.86□□□□□ -1.63
COL9A1-209ENST00000489861 OR10G4Q8NGN3 311 aa4.86□□□□□ -1.63
COL9A1-209ENST00000489861 OR10G9Q8NGN4 311 aa4.86□□□□□ -1.63
COL9A1-209ENST00000489861 OR10G7Q8NGN6 311 aa4.86□□□□□ -1.63
COL9A1-209ENST00000489861 PSMG3Q9BT73 122 aaPredicted RBP4.86□□□□□ -1.63
COL9A1-209ENST00000489861 KLF12Q9Y4X4 402 aa4.86□□□□□ -1.63
COL9A1-209ENST00000489861 PSCAO43653 123 aa4.85□□□□□ -1.63
COL9A1-209ENST00000489861 CXorf1O96002 111 aa4.85□□□□□ -1.63
COL9A1-209ENST00000489861 CDC34P49427 236 aaPredicted RBP4.85□□□□□ -1.63
COL9A1-209ENST00000489861 CRYBA4P53673 196 aa4.85□□□□□ -1.63
COL9A1-209ENST00000489861 CD300CQ08708 224 aa4.85□□□□□ -1.63
COL9A1-209ENST00000489861 Q6AWC8 147 aa4.85□□□□□ -1.63
COL9A1-209ENST00000489861 KRTAP19-1Q8IUB9 90 aa4.85□□□□□ -1.63
COL9A1-209ENST00000489861 ZFAND2AQ8N6M9 145 aa4.85□□□□□ -1.63
COL9A1-209ENST00000489861 C11orf72Q8NBR9 251 aa4.85□□□□□ -1.63
COL9A1-209ENST00000489861 OR2G3Q8NGZ4 309 aa4.85□□□□□ -1.63
COL9A1-209ENST00000489861 PHYHIPLQ96FC7 376 aa4.85□□□□□ -1.63
COL9A1-209ENST00000489861 VSIG2Q96IQ7 327 aa4.85□□□□□ -1.63
COL9A1-209ENST00000489861 AQP10Q96PS8 301 aa4.85□□□□□ -1.63
COL9A1-209ENST00000489861 SMIM3Q9BZL3 60 aa4.85□□□□□ -1.63
COL9A1-209ENST00000489861 NKX6-2Q9C056 277 aaPredicted RBP4.85□□□□□ -1.63
COL9A1-209ENST00000489861 ACTR3CQ9C0K3 210 aaPredicted RBP4.85□□□□□ -1.63
COL9A1-209ENST00000489861 SDF2L1Q9HCN8 221 aa4.85□□□□□ -1.63
COL9A1-209ENST00000489861 TMEM167BQ9NRX6 74 aa4.85□□□□□ -1.63
COL9A1-209ENST00000489861 TP53TG3Q9ULZ0 132 aa4.85□□□□□ -1.63
COL9A1-209ENST00000489861 TRAV8-6A0A0B4J262 113 aa4.84□□□□□ -1.63
COL9A1-209ENST00000489861 TRAV4A0A0B4J268 109 aa4.84□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms