RNA–Protein interactions for RNA: ENST00000489573.5

SMC4-221, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 1 (best)

Gene SMC4, Length 1,553 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-221ENST00000489573 GRIFINA4D1Z8 144 aa15.93■□□□□ 0.14
SMC4-221ENST00000489573 ZNF324O75467 553 aaPredicted RBP15.93■□□□□ 0.14
SMC4-221ENST00000489573 MRPL54Q6P161 138 aaKnown RBP15.93■□□□□ 0.14
SMC4-221ENST00000489573 ZNF575Q86XF7 245 aa15.93■□□□□ 0.14
SMC4-221ENST00000489573 STAB1Q9NY15 2570 aa15.93■□□□□ 0.14
SMC4-221ENST00000489573 CRXO43186 299 aaPredicted RBP15.92■□□□□ 0.14
SMC4-221ENST00000489573 ANXA2RQ3ZCQ2 193 aa15.92■□□□□ 0.14
SMC4-221ENST00000489573 MUC21Q5SSG8 566 aa15.92■□□□□ 0.14
SMC4-221ENST00000489573 FER1L6-AS1Q8NA97 138 aa15.92■□□□□ 0.14
SMC4-221ENST00000489573 AMBPP02760 352 aa15.92■□□□□ 0.14
SMC4-221ENST00000489573 IGLC6P0CF74 106 aa15.92■□□□□ 0.14
SMC4-221ENST00000489573 PRR31Q5SQ13 230 aa15.92■□□□□ 0.14
SMC4-221ENST00000489573 ATP5L2Q7Z4Y8 100 aa15.92■□□□□ 0.14
SMC4-221ENST00000489573 TPPP3Q9BW30 176 aa15.92■□□□□ 0.14
SMC4-221ENST00000489573 FAM159AQ6UWV7 190 aa15.91■□□□□ 0.14
SMC4-221ENST00000489573 CTRLP40313 264 aa15.9■□□□□ 0.14
SMC4-221ENST00000489573 NUTF2P61970 127 aaKnown RBP15.9■□□□□ 0.14
SMC4-221ENST00000489573 LYZL1Q6UWQ5 148 aa15.9■□□□□ 0.14
SMC4-221ENST00000489573 BORCS7Q96B45 105 aa15.9■□□□□ 0.14
SMC4-221ENST00000489573 TMA7Q9Y2S6 64 aaKnown RBP15.9■□□□□ 0.14
SMC4-221ENST00000489573 FRMD6-AS1P0C7T7 363 aa15.89■□□□□ 0.13
SMC4-221ENST00000489573 COX19Q49B96 90 aa15.89■□□□□ 0.13
SMC4-221ENST00000489573 RASL11AQ6T310 242 aa15.89■□□□□ 0.13
SMC4-221ENST00000489573 DEFB125Q8N687 156 aa15.89■□□□□ 0.13
SMC4-221ENST00000489573 KCNS1Q96KK3 526 aa15.89■□□□□ 0.13
SMC4-221ENST00000489573 FBN3Q75N90 2809 aa15.89■□□□□ 0.13
SMC4-221ENST00000489573 A0A1B0GUT8 65 aa15.88■□□□□ 0.13
SMC4-221ENST00000489573 A0A1B0GXF2 115 aa15.88■□□□□ 0.13
SMC4-221ENST00000489573 INSP01308 110 aa15.88■□□□□ 0.13
SMC4-221ENST00000489573 ARMS2P0C7Q2 107 aa15.87■□□□□ 0.13
SMC4-221ENST00000489573 RBMY1A1P0DJD3 496 aaKnown RBP15.87■□□□□ 0.13
SMC4-221ENST00000489573 RBMY1CP0DJD4 496 aa15.87■□□□□ 0.13
SMC4-221ENST00000489573 ASIPP42127 132 aa15.87■□□□□ 0.13
SMC4-221ENST00000489573 HBBP68871 147 aa15.87■□□□□ 0.13
SMC4-221ENST00000489573 RBMY1FQ15415 496 aaKnown RBP15.87■□□□□ 0.13
SMC4-221ENST00000489573 TDRG1Q3Y452 100 aa15.87■□□□□ 0.13
SMC4-221ENST00000489573 WDR73Q6P4I2 378 aa15.87■□□□□ 0.13
SMC4-221ENST00000489573 IGHV1OR15-1A0A075B7D0 117 aa15.87■□□□□ 0.13
SMC4-221ENST00000489573 C1orf196B1AJZ1 125 aa15.87■□□□□ 0.13
SMC4-221ENST00000489573 TRGC2P03986 189 aa15.87■□□□□ 0.13
SMC4-221ENST00000489573 RPL35AP18077 110 aaKnown RBP15.87■□□□□ 0.13
SMC4-221ENST00000489573 RIGQ13278 110 aa15.87■□□□□ 0.13
SMC4-221ENST00000489573 C20orf144Q9BQM9 153 aa15.87■□□□□ 0.13
SMC4-221ENST00000489573 SNURFLB1AK76 121 aa15.86■□□□□ 0.13
SMC4-221ENST00000489573 F2Z2F3 143 aa15.86■□□□□ 0.13
SMC4-221ENST00000489573 OXLD1Q5BKU9 147 aa15.86■□□□□ 0.13
SMC4-221ENST00000489573 DNLZQ5SXM8 178 aa15.86■□□□□ 0.13
SMC4-221ENST00000489573 GNB1LQ9BYB4 327 aa15.86■□□□□ 0.13
SMC4-221ENST00000489573 XCL2Q9UBD3 114 aa15.86■□□□□ 0.13
SMC4-221ENST00000489573 H3BVH4 76 aa15.85■□□□□ 0.13
SMC4-221ENST00000489573 GNRH2O43555 120 aa15.85■□□□□ 0.13
SMC4-221ENST00000489573 OR5AL1P0C617 328 aa15.85■□□□□ 0.13
SMC4-221ENST00000489573 S100A4P26447 101 aaKnown RBP15.85■□□□□ 0.13
SMC4-221ENST00000489573 CAMPP49913 170 aa15.85■□□□□ 0.13
SMC4-221ENST00000489573 RAB4BP61018 213 aa15.85■□□□□ 0.13
SMC4-221ENST00000489573 MORN3Q6PF18 240 aaPredicted RBP15.85■□□□□ 0.13
SMC4-221ENST00000489573 TMEM136Q6ZRR5 245 aa15.85■□□□□ 0.13
SMC4-221ENST00000489573 TRAPPC1Q9Y5R8 145 aa15.85■□□□□ 0.13
SMC4-221ENST00000489573 A0A1B0GW15 77 aa15.84■□□□□ 0.13
SMC4-221ENST00000489573 SNAI2O43623 268 aa15.84■□□□□ 0.13
SMC4-221ENST00000489573 MT-ND6P03923 174 aa15.84■□□□□ 0.13
SMC4-221ENST00000489573 MED14OSP0DP75 135 aa15.84■□□□□ 0.13
SMC4-221ENST00000489573 SSBP4Q9BWG4 385 aaPredicted RBP15.84■□□□□ 0.13
SMC4-221ENST00000489573 CNFNQ9BYD5 112 aa15.84■□□□□ 0.13
SMC4-221ENST00000489573 VWFP04275 2813 aa15.83■□□□□ 0.13
SMC4-221ENST00000489573 HLA-DQA1P01909 254 aa15.83■□□□□ 0.13
SMC4-221ENST00000489573 S100A8P05109 93 aa15.83■□□□□ 0.13
SMC4-221ENST00000489573 Q8N1Y9 231 aa15.83■□□□□ 0.13
SMC4-221ENST00000489573 MUC21A0A0G2JKD1 596 aa15.83■□□□□ 0.12
SMC4-221ENST00000489573 MUC21A0A140T8X8 626 aa15.83■□□□□ 0.12
SMC4-221ENST00000489573 RAB5BP61020 215 aa15.83■□□□□ 0.12
SMC4-221ENST00000489573 FRZBQ92765 325 aa15.83■□□□□ 0.12
SMC4-221ENST00000489573 TIMM8BQ9Y5J9 83 aaPredicted RBP15.83■□□□□ 0.12
SMC4-221ENST00000489573 ANK2Q01484 3957 aa15.82■□□□□ 0.12
SMC4-221ENST00000489573 FABP9Q0Z7S8 132 aa15.82■□□□□ 0.12
SMC4-221ENST00000489573 MRPL18Q9H0U6 180 aaKnown RBP15.82■□□□□ 0.12
SMC4-221ENST00000489573 TP53TG3Q9ULZ0 132 aa15.82■□□□□ 0.12
SMC4-221ENST00000489573 NOTCH3Q9UM47 2321 aa15.82■□□□□ 0.12
SMC4-221ENST00000489573 TRGV11A0A075B6L2 103 aa15.81■□□□□ 0.12
SMC4-221ENST00000489573 PHOX2AO14813 284 aa15.81■□□□□ 0.12
SMC4-221ENST00000489573 GIG44P09565 113 aaPredicted RBP15.81■□□□□ 0.12
SMC4-221ENST00000489573 RNASE3P12724 160 aaKnown RBP15.81■□□□□ 0.12
SMC4-221ENST00000489573 SSTP61278 116 aa15.81■□□□□ 0.12
SMC4-221ENST00000489573 CACNG7P62955 275 aa15.81■□□□□ 0.12
SMC4-221ENST00000489573 LINC01587Q99440 93 aa15.81■□□□□ 0.12
SMC4-221ENST00000489573 LINC00467Q9BRT7 94 aa15.81■□□□□ 0.12
SMC4-221ENST00000489573 C1QTNF4Q9BXJ3 329 aa15.81■□□□□ 0.12
SMC4-221ENST00000489573 IGHV3-16A0A0C4DH30 117 aa15.8■□□□□ 0.12
SMC4-221ENST00000489573 CBY3A6NI87 242 aa15.8■□□□□ 0.12
SMC4-221ENST00000489573 EGFEM1PQ0D2K5 195 aa15.8■□□□□ 0.12
SMC4-221ENST00000489573 ZFP82Q8N141 532 aa15.8■□□□□ 0.12
SMC4-221ENST00000489573 TMEM256Q8N2U0 113 aa15.8■□□□□ 0.12
SMC4-221ENST00000489573 OR10AG1Q8NH19 301 aa15.8■□□□□ 0.12
SMC4-221ENST00000489573 SCRT2Q9NQ03 307 aa15.8■□□□□ 0.12
SMC4-221ENST00000489573 ZMAT5Q9UDW3 170 aaKnown RBP15.8■□□□□ 0.12
SMC4-221ENST00000489573 NTF3P20783 257 aa15.79■□□□□ 0.12
SMC4-221ENST00000489573 TWIST1Q15672 202 aa15.79■□□□□ 0.12
SMC4-221ENST00000489573 C1orf158Q8N1D5 194 aa15.79■□□□□ 0.12
SMC4-221ENST00000489573 GATD1Q8NB37 220 aa15.79■□□□□ 0.12
SMC4-221ENST00000489573 SPANXN1Q5VSR9 72 aa15.79■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms