RNA–Protein interactions for RNA: ENST00000489180.6

NPHP4-209, Transcript of nephrocystin 4, humanhuman

TSL 2

Gene NPHP4, Length 5,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-209ENST00000489180 WIPF2Q8TF74 440 aaPredicted RBP13.85□□□□□ -0.19
NPHP4-209ENST00000489180 IGKV2D-29A0A075B6S2 120 aaPredicted RBP13.84□□□□□ -0.19
NPHP4-209ENST00000489180 IGKV2-29A2NJV5 120 aaPredicted RBP13.84□□□□□ -0.19
NPHP4-209ENST00000489180 TDRG1Q3Y452 100 aa13.84□□□□□ -0.19
NPHP4-209ENST00000489180 CR1LQ2VPA4 569 aa13.84□□□□□ -0.19
NPHP4-209ENST00000489180 SIVA1O15304 175 aa13.84□□□□□ -0.19
NPHP4-209ENST00000489180 NKAPP1Q8N9T2 125 aa13.84□□□□□ -0.19
NPHP4-209ENST00000489180 Q71RC1 249 aaPredicted RBP13.83□□□□□ -0.19
NPHP4-209ENST00000489180 NTN5Q8WTR8 489 aaPredicted RBP13.83□□□□□ -0.2
NPHP4-209ENST00000489180 K7EMI3 77 aa13.83□□□□□ -0.2
NPHP4-209ENST00000489180 CITED2Q99967 270 aaPredicted RBP13.83□□□□□ -0.2
NPHP4-209ENST00000489180 GRNP28799 593 aaKnown RBP13.83□□□□□ -0.2
NPHP4-209ENST00000489180 RPL32P62910 135 aaKnown RBP13.83□□□□□ -0.2
NPHP4-209ENST00000489180 MRPL53Q96EL3 112 aaKnown RBP13.83□□□□□ -0.2
NPHP4-209ENST00000489180 UBL5Q9BZL1 73 aa13.83□□□□□ -0.2
NPHP4-209ENST00000489180 PRSS33Q8NF86 280 aa13.82□□□□□ -0.2
NPHP4-209ENST00000489180 TMEM126AQ9H061 195 aa13.82□□□□□ -0.2
NPHP4-209ENST00000489180 RBMY1FQ15415 496 aaKnown RBP13.82□□□□□ -0.2
NPHP4-209ENST00000489180 Q8NFD4 153 aa13.82□□□□□ -0.2
NPHP4-209ENST00000489180 RPL39LQ96EH5 51 aaKnown RBP13.82□□□□□ -0.2
NPHP4-209ENST00000489180 IGF2BP2-AS1Q96M15 143 aa13.82□□□□□ -0.2
NPHP4-209ENST00000489180 HERVK_113P63121 156 aa13.82□□□□□ -0.2
NPHP4-209ENST00000489180 CACNA1GO43497 2377 aa13.82□□□□□ -0.2
NPHP4-209ENST00000489180 UTF1Q5T230 341 aa13.81□□□□□ -0.2
NPHP4-209ENST00000489180 KAAG1Q9UBP8 84 aa13.81□□□□□ -0.2
NPHP4-209ENST00000489180 WNK2Q9Y3S1 2297 aa13.81□□□□□ -0.2
NPHP4-209ENST00000489180 SHISA9B4DS77 424 aa13.81□□□□□ -0.2
NPHP4-209ENST00000489180 KIR2DL5BA0A0G2JN68 375 aa13.81□□□□□ -0.2
NPHP4-209ENST00000489180 KIR2DL5BA0A0G2JPC4 375 aa13.81□□□□□ -0.2
NPHP4-209ENST00000489180 KIR2DL5AQ8N109 375 aa13.81□□□□□ -0.2
NPHP4-209ENST00000489180 C3orf56Q8N813 242 aa13.8□□□□□ -0.2
NPHP4-209ENST00000489180 ANGP03950 147 aaKnown RBP13.8□□□□□ -0.2
NPHP4-209ENST00000489180 MSRB1Q9NZV6 116 aa13.8□□□□□ -0.2
NPHP4-209ENST00000489180 GPR179Q6PRD1 2367 aa13.8□□□□□ -0.2
NPHP4-209ENST00000489180 CACNA1BQ00975 2339 aa13.8□□□□□ -0.2
NPHP4-209ENST00000489180 NOP10Q9NPE3 64 aaKnown RBP13.8□□□□□ -0.2
NPHP4-209ENST00000489180 DEFB136Q30KP8 78 aa13.79□□□□□ -0.2
NPHP4-209ENST00000489180 TRAV13-2A0A0B4J235 113 aa13.79□□□□□ -0.2
NPHP4-209ENST00000489180 SLX1AQ9BQ83 275 aa13.79□□□□□ -0.2
NPHP4-209ENST00000489180 GP9P14770 177 aa13.79□□□□□ -0.2
NPHP4-209ENST00000489180 KIAA1671Q9BY89 1806 aa13.79□□□□□ -0.2
NPHP4-209ENST00000489180 XCL1P47992 114 aa13.78□□□□□ -0.2
NPHP4-209ENST00000489180 ZNF493Q6ZR52 646 aa13.78□□□□□ -0.2
NPHP4-209ENST00000489180 U3KQE9 123 aa13.78□□□□□ -0.2
NPHP4-209ENST00000489180 CFC1BP0CG36 223 aa13.78□□□□□ -0.2
NPHP4-209ENST00000489180 CFC1P0CG37 223 aa13.78□□□□□ -0.2
NPHP4-209ENST00000489180 PLA2G2CQ5R387 149 aa13.78□□□□□ -0.2
NPHP4-209ENST00000489180 PATE2Q6UY27 113 aa13.78□□□□□ -0.2
NPHP4-209ENST00000489180 C15orf53Q8NAA6 179 aa13.78□□□□□ -0.2
NPHP4-209ENST00000489180 KMT2EQ8IZD2 1858 aa13.78□□□□□ -0.2
NPHP4-209ENST00000489180 FRMPD3Q5JV73 1810 aa13.78□□□□□ -0.2
NPHP4-209ENST00000489180 ANAPC1Q9H1A4 1944 aa13.78□□□□□ -0.2
NPHP4-209ENST00000489180 SH2D6Q7Z4S9 175 aa13.77□□□□□ -0.2
NPHP4-209ENST00000489180 Q9H8V8 135 aa13.77□□□□□ -0.2
NPHP4-209ENST00000489180 A0A0J9YY99 117 aa13.77□□□□□ -0.2
NPHP4-209ENST00000489180 CRYGCP07315 174 aa13.77□□□□□ -0.2
NPHP4-209ENST00000489180 DSCR8Q96T75 97 aa13.77□□□□□ -0.2
NPHP4-209ENST00000489180 IGHV4-59P01825 116 aa13.77□□□□□ -0.21
NPHP4-209ENST00000489180 CRYBA4P53673 196 aa13.77□□□□□ -0.21
NPHP4-209ENST00000489180 IGHG4P01861 327 aa13.77□□□□□ -0.21
NPHP4-209ENST00000489180 ANKRD39Q53RE8 183 aa13.77□□□□□ -0.21
NPHP4-209ENST00000489180 DEFB125Q8N687 156 aa13.77□□□□□ -0.21
NPHP4-209ENST00000489180 I3L2K1 104 aa13.76□□□□□ -0.21
NPHP4-209ENST00000489180 LHBP01229 141 aa13.76□□□□□ -0.21
NPHP4-209ENST00000489180 DEFB112Q30KQ8 113 aa13.76□□□□□ -0.21
NPHP4-209ENST00000489180 FOXI2Q6ZQN5 318 aa13.76□□□□□ -0.21
NPHP4-209ENST00000489180 ANKRD29Q8N6D5 301 aa13.76□□□□□ -0.21
NPHP4-209ENST00000489180 C8orf31Q8N9H6 132 aa13.76□□□□□ -0.21
NPHP4-209ENST00000489180 WT1P19544 449 aaPredicted RBP13.76□□□□□ -0.21
NPHP4-209ENST00000489180 APRG1Q8IVJ8 170 aa13.76□□□□□ -0.21
NPHP4-209ENST00000489180 HOXD3P31249 432 aaPredicted RBP13.75□□□□□ -0.21
NPHP4-209ENST00000489180 Q6ZQT7 251 aa13.75□□□□□ -0.21
NPHP4-209ENST00000489180 RBAKDNA6NC62 111 aa13.75□□□□□ -0.21
NPHP4-209ENST00000489180 TRACP01848 142 aa13.75□□□□□ -0.21
NPHP4-209ENST00000489180 KRTAP27-1Q3LI81 207 aa13.75□□□□□ -0.21
NPHP4-209ENST00000489180 COA6Q5JTJ3 125 aaKnown RBP13.74□□□□□ -0.21
NPHP4-209ENST00000489180 K7EIM0 57 aa13.74□□□□□ -0.21
NPHP4-209ENST00000489180 PRB1P04280 392 aa13.74□□□□□ -0.21
NPHP4-209ENST00000489180 IGLL5B9A064 214 aa13.73□□□□□ -0.21
NPHP4-209ENST00000489180 ELANEP08246 267 aa13.73□□□□□ -0.21
NPHP4-209ENST00000489180 TTTY13Q9BZ97 58 aa13.73□□□□□ -0.21
NPHP4-209ENST00000489180 SRSF2Q01130 221 aaKnown RBP13.73□□□□□ -0.21
NPHP4-209ENST00000489180 RHOHQ15669 191 aa13.73□□□□□ -0.21
NPHP4-209ENST00000489180 MRAPQ8TCY5 172 aa13.73□□□□□ -0.21
NPHP4-209ENST00000489180 GTSF1Q8WW33 167 aa13.73□□□□□ -0.21
NPHP4-209ENST00000489180 BAALC-AS2P0C853 105 aa13.73□□□□□ -0.21
NPHP4-209ENST00000489180 IGHV7-81A0A0B4J1V7 117 aa13.72□□□□□ -0.21
NPHP4-209ENST00000489180 FRMD6-AS1P0C7T7 363 aa13.72□□□□□ -0.21
NPHP4-209ENST00000489180 APOC4P55056 127 aa13.72□□□□□ -0.21
NPHP4-209ENST00000489180 J3QLI3 93 aa13.72□□□□□ -0.21
NPHP4-209ENST00000489180 NBASA2RRP1 2371 aa13.72□□□□□ -0.21
NPHP4-209ENST00000489180 TEX48A0A1B0GUV7 120 aa13.72□□□□□ -0.21
NPHP4-209ENST00000489180 IGKV1-17P01599 117 aa13.72□□□□□ -0.21
NPHP4-209ENST00000489180 CENPVL3A0A0U1RRI6 287 aa13.71□□□□□ -0.21
NPHP4-209ENST00000489180 LYPD6Q86Y78 171 aa13.71□□□□□ -0.21
NPHP4-209ENST00000489180 SLURP1P55000 103 aa13.71□□□□□ -0.21
NPHP4-209ENST00000489180 BOD1L2Q8IYS8 172 aa13.71□□□□□ -0.21
NPHP4-209ENST00000489180 CITED1Q99966 193 aa13.71□□□□□ -0.21
NPHP4-209ENST00000489180 NOTCH4Q99466 2003 aa13.71□□□□□ -0.21
NPHP4-209ENST00000489180 H3BUA1 57 aa13.71□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 83.7 ms