RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 TMEM160Q9NX00 188 aa13.64□□□□□ -0.23
VIM-206ENST00000487938 TMEM8BA6NDV4 472 aa13.63□□□□□ -0.23
VIM-206ENST00000487938 F6UB75 175 aa13.63□□□□□ -0.23
VIM-206ENST00000487938 H3BUX3 64 aa13.63□□□□□ -0.23
VIM-206ENST00000487938 M0R381 172 aa13.63□□□□□ -0.23
VIM-206ENST00000487938 CRIP2P52943 208 aaPredicted RBP13.63□□□□□ -0.23
VIM-206ENST00000487938 MEGF9Q9H1U4 602 aa13.63□□□□□ -0.23
VIM-206ENST00000487938 IGHV4-4A0A075B6R2 117 aa13.62□□□□□ -0.23
VIM-206ENST00000487938 NDUFA4O00483 81 aa13.62□□□□□ -0.23
VIM-206ENST00000487938 RNF151Q2KHN1 245 aa13.62□□□□□ -0.23
VIM-206ENST00000487938 ZFAND2AQ8N6M9 145 aa13.62□□□□□ -0.23
VIM-206ENST00000487938 OR10J6PQ8NGY7 276 aa13.62□□□□□ -0.23
VIM-206ENST00000487938 MYOZ3Q8TDC0 251 aa13.62□□□□□ -0.23
VIM-206ENST00000487938 PIMREGQ9BSJ6 248 aa13.62□□□□□ -0.23
VIM-206ENST00000487938 H3BRM9 83 aa13.62□□□□□ -0.23
VIM-206ENST00000487938 H3BUT2 72 aa13.62□□□□□ -0.23
VIM-206ENST00000487938 PF4V1P10720 104 aa13.62□□□□□ -0.23
VIM-206ENST00000487938 LINC00477Q96M19 166 aa13.62□□□□□ -0.23
VIM-206ENST00000487938 AP1S3Q96PC3 154 aa13.62□□□□□ -0.23
VIM-206ENST00000487938 C9orf118A6NHY6 69 aa13.61□□□□□ -0.23
VIM-206ENST00000487938 C21orf62-AS1Q17RA5 79 aa13.61□□□□□ -0.23
VIM-206ENST00000487938 ZC2HC1BQ5TFG8 222 aa13.61□□□□□ -0.23
VIM-206ENST00000487938 ATP6V0BQ99437 205 aa13.61□□□□□ -0.23
VIM-206ENST00000487938 CST9LQ9H4G1 147 aa13.61□□□□□ -0.23
VIM-206ENST00000487938 GAGE12BA1L429 117 aa13.61□□□□□ -0.23
VIM-206ENST00000487938 GAGE10A6NGK3 116 aa13.61□□□□□ -0.23
VIM-206ENST00000487938 ATP5LO75964 103 aa13.61□□□□□ -0.23
VIM-206ENST00000487938 DPM2O94777 84 aa13.61□□□□□ -0.23
VIM-206ENST00000487938 RNASE4P34096 147 aaKnown RBP13.61□□□□□ -0.23
VIM-206ENST00000487938 JMJD8Q96S16 334 aa13.61□□□□□ -0.23
VIM-206ENST00000487938 MRPL35Q9NZE8 188 aaKnown RBP13.61□□□□□ -0.23
VIM-206ENST00000487938 PRSS47A8MTI9 375 aa13.6□□□□□ -0.23
VIM-206ENST00000487938 SOCS3O14543 225 aa13.6□□□□□ -0.23
VIM-206ENST00000487938 SRD5A1P18405 259 aa13.6□□□□□ -0.23
VIM-206ENST00000487938 S100A4P26447 101 aaKnown RBP13.6□□□□□ -0.23
VIM-206ENST00000487938 SRSF1Q07955 248 aaKnown RBP eCLIP13.6□□□□□ -0.23
VIM-206ENST00000487938 CCL19Q99731 98 aa13.6□□□□□ -0.23
VIM-206ENST00000487938 LENEPQ9Y5L5 61 aa13.6□□□□□ -0.23
VIM-206ENST00000487938 PKD1L2Q7Z442 2459 aa13.59□□□□□ -0.23
VIM-206ENST00000487938 OVOL1O14753 267 aa13.59□□□□□ -0.23
VIM-206ENST00000487938 IGHG2P01859 326 aa13.59□□□□□ -0.23
VIM-206ENST00000487938 PCP4P48539 62 aa13.59□□□□□ -0.23
VIM-206ENST00000487938 ANXA2RQ3ZCQ2 193 aa13.59□□□□□ -0.23
VIM-206ENST00000487938 C14orf178Q8N769 122 aaPredicted RBP13.59□□□□□ -0.23
VIM-206ENST00000487938 TRAV21A0A0B4J279 112 aa13.59□□□□□ -0.23
VIM-206ENST00000487938 GNRH2O43555 120 aa13.59□□□□□ -0.23
VIM-206ENST00000487938 C10orf105Q8TEF2 133 aa13.59□□□□□ -0.23
VIM-206ENST00000487938 A0A0G2JLM5 398 aa13.58□□□□□ -0.24
VIM-206ENST00000487938 EDN2P20800 178 aa13.58□□□□□ -0.24
VIM-206ENST00000487938 GCSHP23434 173 aa13.58□□□□□ -0.24
VIM-206ENST00000487938 USMG5Q96IX5 58 aa13.58□□□□□ -0.24
VIM-206ENST00000487938 SMPXQ9UHP9 88 aa13.58□□□□□ -0.24
VIM-206ENST00000487938 PIEZO1Q92508 2521 aa13.58□□□□□ -0.24
VIM-206ENST00000487938 IGHV4-30-2A0A087WSY4 118 aa13.57□□□□□ -0.24
VIM-206ENST00000487938 A6NDX4 124 aa13.57□□□□□ -0.24
VIM-206ENST00000487938 RPL39LQ96EH5 51 aaKnown RBP13.57□□□□□ -0.24
VIM-206ENST00000487938 MRAP2Q96G30 205 aa13.57□□□□□ -0.24
VIM-206ENST00000487938 RHPN1-AS1Q9BWJ2 59 aa13.57□□□□□ -0.24
VIM-206ENST00000487938 PHLDA3Q9Y5J5 127 aa13.57□□□□□ -0.24
VIM-206ENST00000487938 ASIPP42127 132 aa13.56□□□□□ -0.24
VIM-206ENST00000487938 CDKN1BP46527 198 aa13.56□□□□□ -0.24
VIM-206ENST00000487938 OCIAD2Q56VL3 154 aa13.56□□□□□ -0.24
VIM-206ENST00000487938 RASL10AQ92737 203 aa13.56□□□□□ -0.24
VIM-206ENST00000487938 SMIM2Q9BVW6 85 aa13.56□□□□□ -0.24
VIM-206ENST00000487938 MGPP08493 103 aa13.56□□□□□ -0.24
VIM-206ENST00000487938 FXYD2P54710 66 aa13.56□□□□□ -0.24
VIM-206ENST00000487938 ATP5J2P56134 94 aa13.56□□□□□ -0.24
VIM-206ENST00000487938 WFDC12Q8WWY7 111 aa13.56□□□□□ -0.24
VIM-206ENST00000487938 CELSR2Q9HCU4 2923 aa13.55□□□□□ -0.24
VIM-206ENST00000487938 TRBV25-1A0A075B6N4 114 aa13.55□□□□□ -0.24
VIM-206ENST00000487938 A0A087WX48 190 aa13.55□□□□□ -0.24
VIM-206ENST00000487938 CLEC2AQ6UVW9 174 aa13.55□□□□□ -0.24
VIM-206ENST00000487938 MAPKAPK5-AS1Q8N8E1 139 aa13.55□□□□□ -0.24
VIM-206ENST00000487938 SPOCK3Q9BQ16 436 aa13.55□□□□□ -0.24
VIM-206ENST00000487938 CHAC1Q9BUX1 264 aa13.55□□□□□ -0.24
VIM-206ENST00000487938 SPG11Q96JI7 2443 aa13.55□□□□□ -0.24
VIM-206ENST00000487938 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP13.54□□□□□ -0.24
VIM-206ENST00000487938 K7EMI3 77 aa13.54□□□□□ -0.24
VIM-206ENST00000487938 SUMO2P61956 95 aaKnown RBP13.54□□□□□ -0.24
VIM-206ENST00000487938 UFSP1Q6NVU6 142 aa13.54□□□□□ -0.24
VIM-206ENST00000487938 FAM19A4Q96LR4 140 aa13.54□□□□□ -0.24
VIM-206ENST00000487938 DPH3P1Q9H4G8 78 aa13.54□□□□□ -0.24
VIM-206ENST00000487938 CACNA1AO00555 2505 aa13.54□□□□□ -0.24
VIM-206ENST00000487938 AVPP01185 164 aa13.53□□□□□ -0.24
VIM-206ENST00000487938 TMEM95Q3KNT9 176 aa13.53□□□□□ -0.24
VIM-206ENST00000487938 PSMG4Q5JS54 123 aa13.53□□□□□ -0.24
VIM-206ENST00000487938 GTF2H5Q6ZYL4 71 aa13.53□□□□□ -0.24
VIM-206ENST00000487938 HIGD1BQ9P298 99 aa13.53□□□□□ -0.24
VIM-206ENST00000487938 H3BUA1 57 aa13.53□□□□□ -0.24
VIM-206ENST00000487938 SMIM13P0DJ93 91 aa13.52□□□□□ -0.24
VIM-206ENST00000487938 RNASE3P12724 160 aaKnown RBP13.52□□□□□ -0.24
VIM-206ENST00000487938 SCGB3A1Q96QR1 104 aa13.52□□□□□ -0.24
VIM-206ENST00000487938 K7ERJ3 54 aa13.52□□□□□ -0.25
VIM-206ENST00000487938 MSMBP08118 114 aa13.52□□□□□ -0.25
VIM-206ENST00000487938 K7EP34 96 aa13.51□□□□□ -0.25
VIM-206ENST00000487938 IGLV1-40P01703 118 aa13.51□□□□□ -0.25
VIM-206ENST00000487938 DEFB104AQ8WTQ1 72 aa13.51□□□□□ -0.25
VIM-206ENST00000487938 DAZ1Q9NQZ3 744 aaKnown RBP13.51□□□□□ -0.25
VIM-206ENST00000487938 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP13.51□□□□□ -0.251e-6■■■■■ 28.8
VIM-206ENST00000487938 A0A1W2PPM0 123 aa13.51□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 61.1 ms