RNA–Protein interactions for RNA: ENST00000485947.1

VIM-205, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 1,139 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-205ENST00000485947 KLLNB2CW77 178 aa12.38□□□□□ -0.43
VIM-205ENST00000485947 GATCO43716 136 aaKnown RBP12.38□□□□□ -0.43
VIM-205ENST00000485947 P01737 135 aa12.38□□□□□ -0.43
VIM-205ENST00000485947 PFN1P07737 140 aaKnown RBP12.38□□□□□ -0.43
VIM-205ENST00000485947 CDKN1BP46527 198 aa12.38□□□□□ -0.43
VIM-205ENST00000485947 ZNF124Q15973 351 aa12.38□□□□□ -0.43
VIM-205ENST00000485947 TRPT1Q86TN4 253 aaKnown RBP12.38□□□□□ -0.43
VIM-205ENST00000485947 NUDT10Q8NFP7 164 aa12.38□□□□□ -0.43
VIM-205ENST00000485947 NUDT11Q96G61 164 aa12.38□□□□□ -0.43
VIM-205ENST00000485947 C11orf68Q9H3H3 251 aaKnown RBP12.38□□□□□ -0.43
VIM-205ENST00000485947 AGRNO00468 2067 aa12.38□□□□□ -0.43
VIM-205ENST00000485947 CXorf65A6NEN9 183 aa12.37□□□□□ -0.43
VIM-205ENST00000485947 SH2D1AO60880 128 aa12.37□□□□□ -0.43
VIM-205ENST00000485947 CA1P00915 261 aaPredicted RBP12.37□□□□□ -0.43
VIM-205ENST00000485947 AMBPP02760 352 aa12.37□□□□□ -0.43
VIM-205ENST00000485947 GPX1P07203 203 aa12.37□□□□□ -0.43
VIM-205ENST00000485947 CRIP1P50238 77 aa12.37□□□□□ -0.43
VIM-205ENST00000485947 CT83Q5H943 113 aa12.37□□□□□ -0.43
VIM-205ENST00000485947 Q6AWC8 147 aa12.37□□□□□ -0.43
VIM-205ENST00000485947 V9GYV3 84 aa12.37□□□□□ -0.43
VIM-205ENST00000485947 TRAV21A0A0B4J279 112 aa12.36□□□□□ -0.43
VIM-205ENST00000485947 ZNF705GA8MUZ8 300 aaPredicted RBP12.36□□□□□ -0.43
VIM-205ENST00000485947 IGKV3-20P01619 116 aa12.36□□□□□ -0.43
VIM-205ENST00000485947 ZNF80P51504 273 aaPredicted RBP12.36□□□□□ -0.43
VIM-205ENST00000485947 NUTF2P61970 127 aaKnown RBP12.36□□□□□ -0.43
VIM-205ENST00000485947 RPP21Q9H633 154 aaKnown RBP12.36□□□□□ -0.43
VIM-205ENST00000485947 SMCO4Q9NRQ5 59 aa12.36□□□□□ -0.43
VIM-205ENST00000485947 C7orf71A4D174 169 aa12.35□□□□□ -0.43
VIM-205ENST00000485947 PRR9Q5T870 116 aa12.35□□□□□ -0.43
VIM-205ENST00000485947 OR11H2Q8NH07 326 aa12.35□□□□□ -0.43
VIM-205ENST00000485947 IMMP2LQ96T52 175 aa12.35□□□□□ -0.43
VIM-205ENST00000485947 KLK5Q9Y337 293 aaPredicted RBP12.35□□□□□ -0.43
VIM-205ENST00000485947 SCO1O75880 301 aa12.34□□□□□ -0.43
VIM-205ENST00000485947 RPS20P60866 119 aaKnown RBP12.34□□□□□ -0.43
VIM-205ENST00000485947 LINC01559Q495D7 138 aa12.34□□□□□ -0.43
VIM-205ENST00000485947 CEMP1Q6PRD7 247 aaPredicted RBP12.34□□□□□ -0.43
VIM-205ENST00000485947 C1QTNF4Q9BXJ3 329 aa12.34□□□□□ -0.43
VIM-205ENST00000485947 IL36BQ9NZH7 164 aa12.34□□□□□ -0.43
VIM-205ENST00000485947 STARD9Q9P2P6 4700 aa12.34□□□□□ -0.43
VIM-205ENST00000485947 HYDINQ4G0P3 5121 aa12.33□□□□□ -0.43
VIM-205ENST00000485947 XKRY2A2RUG3 117 aa12.33□□□□□ -0.44
VIM-205ENST00000485947 A8MWL6 223 aa12.33□□□□□ -0.44
VIM-205ENST00000485947 J3KRW8 73 aa12.33□□□□□ -0.44
VIM-205ENST00000485947 M0R2Z0 102 aa12.33□□□□□ -0.44
VIM-205ENST00000485947 S100PP25815 95 aa12.33□□□□□ -0.44
VIM-205ENST00000485947 RNASE4P34096 147 aaKnown RBP12.33□□□□□ -0.44
VIM-205ENST00000485947 BTN1A1Q13410 526 aa12.33□□□□□ -0.44
VIM-205ENST00000485947 SPINK13Q1W4C9 94 aa12.33□□□□□ -0.44
VIM-205ENST00000485947 KCNIP4Q6PIL6 250 aa12.33□□□□□ -0.44
VIM-205ENST00000485947 OR2D3Q8NGH3 330 aa12.33□□□□□ -0.44
VIM-205ENST00000485947 C20orf144Q9BQM9 153 aa12.33□□□□□ -0.44
VIM-205ENST00000485947 TMEM189A5PLL7 270 aa12.32□□□□□ -0.44
VIM-205ENST00000485947 FAM231BA6NCW3 169 aa12.32□□□□□ -0.44
VIM-205ENST00000485947 CXCL1P09341 107 aa12.32□□□□□ -0.44
VIM-205ENST00000485947 GFI1BQ5VTD9 330 aa12.32□□□□□ -0.44
VIM-205ENST00000485947 CBLN2Q8IUK8 224 aa12.32□□□□□ -0.44
VIM-205ENST00000485947 TSKUQ8WUA8 353 aa12.32□□□□□ -0.44
VIM-205ENST00000485947 GFRA4Q9GZZ7 299 aa12.32□□□□□ -0.44
VIM-205ENST00000485947 GIG44P09565 113 aaPredicted RBP12.31□□□□□ -0.44
VIM-205ENST00000485947 MIFP14174 115 aa12.31□□□□□ -0.44
VIM-205ENST00000485947 TMEM88Q6PEY1 159 aa12.31□□□□□ -0.44
VIM-205ENST00000485947 TRAV9-1A0A075B6T8 112 aa12.3□□□□□ -0.44
VIM-205ENST00000485947 SMIM27A0A1W2PRY6 76 aa12.3□□□□□ -0.44
VIM-205ENST00000485947 CRXO43186 299 aaPredicted RBP12.3□□□□□ -0.44
VIM-205ENST00000485947 ORM1P02763 201 aa12.3□□□□□ -0.44
VIM-205ENST00000485947 KIR3DS1Q14943 382 aa12.3□□□□□ -0.44
VIM-205ENST00000485947 C11orf45Q8TAV5 145 aa12.3□□□□□ -0.44
VIM-205ENST00000485947 BTF3L4Q96K17 158 aa12.3□□□□□ -0.44
VIM-205ENST00000485947 TRAV12-2A0A075B6T6 113 aa12.29□□□□□ -0.44
VIM-205ENST00000485947 ZNF324O75467 553 aaPredicted RBP12.29□□□□□ -0.44
VIM-205ENST00000485947 INSP01308 110 aa12.29□□□□□ -0.44
VIM-205ENST00000485947 TCTAP57738 103 aa12.29□□□□□ -0.44
VIM-205ENST00000485947 FXYD7P58549 80 aa12.29□□□□□ -0.44
VIM-205ENST00000485947 CSNK1G2-AS1Q8NCQ2 148 aa12.29□□□□□ -0.44
VIM-205ENST00000485947 KCNS1Q96KK3 526 aa12.29□□□□□ -0.44
VIM-205ENST00000485947 C11orf21Q9P2W6 132 aa12.29□□□□□ -0.44
VIM-205ENST00000485947 TRAV12-3A0A0B4J271 114 aa12.28□□□□□ -0.44
VIM-205ENST00000485947 RPL19P84098 196 aaKnown RBP12.28□□□□□ -0.44
VIM-205ENST00000485947 PHLDA1Q8WV24 401 aaPredicted RBP12.28□□□□□ -0.44
VIM-205ENST00000485947 NAT8BQ9UHF3 227 aa12.28□□□□□ -0.44
VIM-205ENST00000485947 IGKV3D-20A0A0C4DH25 116 aa12.27□□□□□ -0.45
VIM-205ENST00000485947 A0A1W2PPQ1 181 aa12.27□□□□□ -0.45
VIM-205ENST00000485947 FOXA3P55318 350 aaPredicted RBP12.27□□□□□ -0.45
VIM-205ENST00000485947 ELOBQ15370 118 aa12.27□□□□□ -0.45
VIM-205ENST00000485947 TDRG1Q3Y452 100 aa12.27□□□□□ -0.45
VIM-205ENST00000485947 LCE2DQ5TA82 110 aaPredicted RBP12.27□□□□□ -0.45
VIM-205ENST00000485947 FAM159AQ6UWV7 190 aa12.27□□□□□ -0.45
VIM-205ENST00000485947 TMEM256Q8N2U0 113 aa12.27□□□□□ -0.45
VIM-205ENST00000485947 Q8NAQ8 132 aa12.27□□□□□ -0.45
VIM-205ENST00000485947 LINC00476Q8WZB0 136 aa12.27□□□□□ -0.45
VIM-205ENST00000485947 YPEL4Q96NS1 127 aa12.27□□□□□ -0.45
VIM-205ENST00000485947 NEU1Q99519 415 aa12.27□□□□□ -0.45
VIM-205ENST00000485947 URGCP-MRPS24S4R325 110 aa12.27□□□□□ -0.45
VIM-205ENST00000485947 TRBV24-1A0A075B6N3 115 aa12.26□□□□□ -0.45
VIM-205ENST00000485947 ANXA2RQ3ZCQ2 193 aa12.26□□□□□ -0.45
VIM-205ENST00000485947 DNLZQ5SXM8 178 aa12.26□□□□□ -0.45
VIM-205ENST00000485947 PYGO2Q9BRQ0 406 aa12.26□□□□□ -0.45
VIM-205ENST00000485947 LINC00467Q9BRT7 94 aa12.26□□□□□ -0.45
VIM-205ENST00000485947 NAGKQ9UJ70 344 aa12.26□□□□□ -0.45
VIM-205ENST00000485947 HERC2O95714 4834 aa12.25□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms