RNA–Protein interactions for RNA: ENST00000485792.1

CUX1-208, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 564 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-208ENST00000485792 H3BNG1 76 aa4□□□□□ -1.77
CUX1-208ENST00000485792 ARPC5O15511 151 aa4□□□□□ -1.77
CUX1-208ENST00000485792 SPINK4O60575 86 aa4□□□□□ -1.77
CUX1-208ENST00000485792 CXorf1O96002 111 aa4□□□□□ -1.77
CUX1-208ENST00000485792 TCRAP04437 139 aa4□□□□□ -1.77
CUX1-208ENST00000485792 FHITP49789 147 aa4□□□□□ -1.77
CUX1-208ENST00000485792 GNG5P63218 68 aa4□□□□□ -1.77
CUX1-208ENST00000485792 LGALS9BQ3B8N2 356 aa4□□□□□ -1.77
CUX1-208ENST00000485792 LGALSLQ3ZCW2 172 aaPredicted RBP4□□□□□ -1.77
CUX1-208ENST00000485792 TMEM78Q5T7P6 136 aa4□□□□□ -1.77
CUX1-208ENST00000485792 FAM122CQ6P4D5 195 aa4□□□□□ -1.77
CUX1-208ENST00000485792 C5orf17Q8NAS9 161 aa4□□□□□ -1.77
CUX1-208ENST00000485792 STOML3Q8TAV4 291 aa4□□□□□ -1.77
CUX1-208ENST00000485792 LINC01587Q99440 93 aa4□□□□□ -1.77
CUX1-208ENST00000485792 ACTR3CQ9C0K3 210 aaPredicted RBP4□□□□□ -1.77
CUX1-208ENST00000485792 TMEM167BQ9NRX6 74 aa4□□□□□ -1.77
CUX1-208ENST00000485792 C11orf21Q9P2W6 132 aa4□□□□□ -1.77
CUX1-208ENST00000485792 ARL2-SNX15V9GYD0 113 aa4□□□□□ -1.77
CUX1-208ENST00000485792 TRAV8-1A0A0A6YYK1 113 aa3.99□□□□□ -1.77
CUX1-208ENST00000485792 TRAV1-1A0A0B4J248 108 aa3.99□□□□□ -1.77
CUX1-208ENST00000485792 FBLL1A6NHQ2 334 aaKnown RBP3.99□□□□□ -1.77
CUX1-208ENST00000485792 FAM74A7A6NL05 159 aa3.99□□□□□ -1.77
CUX1-208ENST00000485792 IGLL5B9A064 214 aa3.99□□□□□ -1.77
CUX1-208ENST00000485792 BCL2L11O43521 198 aa3.99□□□□□ -1.77
CUX1-208ENST00000485792 GPX1P07203 203 aa3.99□□□□□ -1.77
CUX1-208ENST00000485792 MALP21145 153 aa3.99□□□□□ -1.77
CUX1-208ENST00000485792 TCL1AP56279 114 aa3.99□□□□□ -1.77
CUX1-208ENST00000485792 RNF212Q495C1 297 aa3.99□□□□□ -1.77
CUX1-208ENST00000485792 DPPA3Q6W0C5 159 aa3.99□□□□□ -1.77
CUX1-208ENST00000485792 IQCF2Q8IXL9 164 aa3.99□□□□□ -1.77
CUX1-208ENST00000485792 EIF4E3Q8N5X7 224 aaKnown RBP3.99□□□□□ -1.77
CUX1-208ENST00000485792 TMEM75Q8N9X5 138 aa3.99□□□□□ -1.77
CUX1-208ENST00000485792 ZNF680Q8NEM1 530 aa3.99□□□□□ -1.77
CUX1-208ENST00000485792 RASL10AQ92737 203 aa3.99□□□□□ -1.77
CUX1-208ENST00000485792 PTH2Q96A98 100 aa3.99□□□□□ -1.77
CUX1-208ENST00000485792 TMEM208Q9BTX3 173 aa3.99□□□□□ -1.77
CUX1-208ENST00000485792 NKX6-2Q9C056 277 aaPredicted RBP3.99□□□□□ -1.77
CUX1-208ENST00000485792 TMPRSS5Q9H3S3 457 aa3.99□□□□□ -1.77
CUX1-208ENST00000485792 EPDR1Q9UM22 224 aa3.99□□□□□ -1.77
CUX1-208ENST00000485792 DNAH8Q96JB1 4490 aa3.98□□□□□ -1.77
CUX1-208ENST00000485792 IGHV1OR15-1A0A075B7D0 117 aa3.98□□□□□ -1.77
CUX1-208ENST00000485792 TRBV6-1A0A0K0K1D8 114 aa3.98□□□□□ -1.77
CUX1-208ENST00000485792 UMAD1C9J7I0 102 aa3.98□□□□□ -1.77
CUX1-208ENST00000485792 J3KRW8 73 aa3.98□□□□□ -1.77
CUX1-208ENST00000485792 C1QBP02746 253 aa3.98□□□□□ -1.77
CUX1-208ENST00000485792 CSN1S1P47710 185 aa3.98□□□□□ -1.77
CUX1-208ENST00000485792 ZNF80P51504 273 aaPredicted RBP3.98□□□□□ -1.77
CUX1-208ENST00000485792 EMP1P54849 157 aa3.98□□□□□ -1.77
CUX1-208ENST00000485792 DAD1P61803 113 aa3.98□□□□□ -1.77
CUX1-208ENST00000485792 FAM74A1Q5RGS3 127 aa3.98□□□□□ -1.77
CUX1-208ENST00000485792 DNLZQ5SXM8 178 aa3.98□□□□□ -1.77
CUX1-208ENST00000485792 Q6ZR54 194 aa3.98□□□□□ -1.77
CUX1-208ENST00000485792 Q6ZTI0 123 aa3.98□□□□□ -1.77
CUX1-208ENST00000485792 GOLT1AQ6ZVE7 132 aa3.98□□□□□ -1.77
CUX1-208ENST00000485792 TMUB2Q71RG4 321 aa3.98□□□□□ -1.77
CUX1-208ENST00000485792 POM121L12Q8N7R1 296 aa3.98□□□□□ -1.77
CUX1-208ENST00000485792 TCEAL7Q9BRU2 100 aa3.98□□□□□ -1.77
CUX1-208ENST00000485792 NDUFAF3Q9BU61 184 aa3.98□□□□□ -1.77
CUX1-208ENST00000485792 KRTAP1-5Q9BYS1 174 aa3.98□□□□□ -1.77
CUX1-208ENST00000485792 NOP10Q9NPE3 64 aaKnown RBP3.98□□□□□ -1.77
CUX1-208ENST00000485792 ATP5G1P05496 136 aa3.97□□□□□ -1.77
CUX1-208ENST00000485792 P0DMU3 169 aa3.97□□□□□ -1.77
CUX1-208ENST00000485792 FAM231AP0DMU4 169 aa3.97□□□□□ -1.77
CUX1-208ENST00000485792 FAM231CP0DMU5 169 aa3.97□□□□□ -1.77
CUX1-208ENST00000485792 RNASE4P34096 147 aaKnown RBP3.97□□□□□ -1.77
CUX1-208ENST00000485792 ATP5G3P48201 142 aa3.97□□□□□ -1.77
CUX1-208ENST00000485792 FAM3BP58499 235 aaPredicted RBP3.97□□□□□ -1.77
CUX1-208ENST00000485792 TMEM88Q6PEY1 159 aa3.97□□□□□ -1.77
CUX1-208ENST00000485792 CYB561D1Q8N8Q1 229 aa3.97□□□□□ -1.77
CUX1-208ENST00000485792 C15orf53Q8NAA6 179 aa3.97□□□□□ -1.77
CUX1-208ENST00000485792 HIST1H2BAQ96A08 127 aa3.97□□□□□ -1.77
CUX1-208ENST00000485792 VSIG2Q96IQ7 327 aa3.97□□□□□ -1.77
CUX1-208ENST00000485792 SGK494Q96LW2 274 aa3.97□□□□□ -1.77
CUX1-208ENST00000485792 HYLS1Q96M11 299 aa3.97□□□□□ -1.77
CUX1-208ENST00000485792 ATG101Q9BSB4 218 aa3.97□□□□□ -1.77
CUX1-208ENST00000485792 MLST8Q9BVC4 326 aa3.97□□□□□ -1.77
CUX1-208ENST00000485792 GSN-AS1Q9NRJ2 163 aa3.97□□□□□ -1.77
CUX1-208ENST00000485792 MDFICQ9P1T7 246 aa3.97□□□□□ -1.77
CUX1-208ENST00000485792 PSG8Q9UQ74 426 aa3.97□□□□□ -1.77
CUX1-208ENST00000485792 TRAV21A0A0B4J279 112 aa3.96□□□□□ -1.78
CUX1-208ENST00000485792 IGHV3-16A0A0C4DH30 117 aa3.96□□□□□ -1.78
CUX1-208ENST00000485792 MAP1LC3B2A6NCE7 125 aa3.96□□□□□ -1.78
CUX1-208ENST00000485792 SNURFLB1AK76 121 aa3.96□□□□□ -1.78
CUX1-208ENST00000485792 F6UZH7 168 aa3.96□□□□□ -1.78
CUX1-208ENST00000485792 LY6G6CO95867 125 aa3.96□□□□□ -1.78
CUX1-208ENST00000485792 LTAP01374 205 aa3.96□□□□□ -1.78
CUX1-208ENST00000485792 PFN1P07737 140 aaKnown RBP3.96□□□□□ -1.78
CUX1-208ENST00000485792 DEFB130BP0DP73 79 aa3.96□□□□□ -1.78
CUX1-208ENST00000485792 DEFB130AP0DP74 79 aa3.96□□□□□ -1.78
CUX1-208ENST00000485792 GCSHP23434 173 aa3.96□□□□□ -1.78
CUX1-208ENST00000485792 SULT1A2P50226 295 aa3.96□□□□□ -1.78
CUX1-208ENST00000485792 CRIP1P50238 77 aa3.96□□□□□ -1.78
CUX1-208ENST00000485792 PTTG1IPP53801 180 aa3.96□□□□□ -1.78
CUX1-208ENST00000485792 FGF8P55075 233 aaPredicted RBP3.96□□□□□ -1.78
CUX1-208ENST00000485792 FLI1Q01543 452 aaPredicted RBP3.96□□□□□ -1.78
CUX1-208ENST00000485792 FHL2Q14192 279 aa3.96□□□□□ -1.78
CUX1-208ENST00000485792 TMEM183BQ1AE95 376 aa3.96□□□□□ -1.78
CUX1-208ENST00000485792 PIK3CD-AS1Q5SR53 167 aa3.96□□□□□ -1.78
CUX1-208ENST00000485792 SAPCD1Q5SSQ6 148 aa3.96□□□□□ -1.78
CUX1-208ENST00000485792 AKR1C8PQ5T2L2 129 aa3.96□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 85.8 ms