RNA–Protein interactions for RNA: ENST00000480943.5

VPS50-215, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 5

Gene VPS50, Length 801 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-215ENST00000480943 SMIM29Q86T20 159 aa4.27□□□□□ -1.73
VPS50-215ENST00000480943 MRPL53Q96EL3 112 aaKnown RBP4.27□□□□□ -1.73
VPS50-215ENST00000480943 PHYHIPLQ96FC7 376 aa4.27□□□□□ -1.73
VPS50-215ENST00000480943 FAM167A-AS1Q96KT0 104 aa4.27□□□□□ -1.73
VPS50-215ENST00000480943 ODF3Q96PU9 254 aa4.27□□□□□ -1.73
VPS50-215ENST00000480943 ATG101Q9BSB4 218 aa4.27□□□□□ -1.73
VPS50-215ENST00000480943 PAXXQ9BUH6 204 aa4.27□□□□□ -1.73
VPS50-215ENST00000480943 BATF3Q9NR55 127 aa4.27□□□□□ -1.73
VPS50-215ENST00000480943 MBD2Q9UBB5 411 aa4.27□□□□□ -1.73
VPS50-215ENST00000480943 FUT9Q9Y231 359 aa4.27□□□□□ -1.73
VPS50-215ENST00000480943 RTL8CO15255 209 aa4.26□□□□□ -1.73
VPS50-215ENST00000480943 EIF3GO75821 320 aaKnown RBP eCLIP4.26□□□□□ -1.73
VPS50-215ENST00000480943 IFNA5P01569 189 aa4.26□□□□□ -1.73
VPS50-215ENST00000480943 NBEAP1P0C6P0 100 aa4.26□□□□□ -1.73
VPS50-215ENST00000480943 UBE2L3P68036 154 aaKnown RBP4.26□□□□□ -1.73
VPS50-215ENST00000480943 CD300CQ08708 224 aa4.26□□□□□ -1.73
VPS50-215ENST00000480943 LGALS9BQ3B8N2 356 aa4.26□□□□□ -1.73
VPS50-215ENST00000480943 RNF212Q495C1 297 aa4.26□□□□□ -1.73
VPS50-215ENST00000480943 TMEM78Q5T7P6 136 aa4.26□□□□□ -1.73
VPS50-215ENST00000480943 LINC00336Q6ZUF6 198 aa4.26□□□□□ -1.73
VPS50-215ENST00000480943 SCGB1C1Q8TD33 95 aa4.26□□□□□ -1.73
VPS50-215ENST00000480943 FXYD5Q96DB9 178 aa4.26□□□□□ -1.73
VPS50-215ENST00000480943 LINC00477Q96M19 166 aa4.26□□□□□ -1.73
VPS50-215ENST00000480943 PYGO2Q9BRQ0 406 aa4.26□□□□□ -1.73
VPS50-215ENST00000480943 AGPAT4-IT1Q9H0P7 198 aa4.26□□□□□ -1.73
VPS50-215ENST00000480943 ALG5Q9Y673 324 aa4.26□□□□□ -1.73
VPS50-215ENST00000480943 PKD1P98161 4303 aa4.26□□□□□ -1.73
VPS50-215ENST00000480943 KIAA1109Q2LD37 5005 aa4.25□□□□□ -1.73
VPS50-215ENST00000480943 A0A0J9YY99 117 aa4.25□□□□□ -1.73
VPS50-215ENST00000480943 KLLNB2CW77 178 aa4.25□□□□□ -1.73
VPS50-215ENST00000480943 SLC25A5P05141 298 aaKnown RBP4.25□□□□□ -1.73
VPS50-215ENST00000480943 GPX1P07203 203 aa4.25□□□□□ -1.73
VPS50-215ENST00000480943 CRISP2P16562 243 aa4.25□□□□□ -1.73
VPS50-215ENST00000480943 RNASE4P34096 147 aaKnown RBP4.25□□□□□ -1.73
VPS50-215ENST00000480943 OR5I1Q13606 314 aa4.25□□□□□ -1.73
VPS50-215ENST00000480943 KHDC3LQ587J8 217 aa4.25□□□□□ -1.73
VPS50-215ENST00000480943 PRR9Q5T870 116 aa4.25□□□□□ -1.73
VPS50-215ENST00000480943 Q6ZR54 194 aa4.25□□□□□ -1.73
VPS50-215ENST00000480943 Q6ZTI0 123 aa4.25□□□□□ -1.73
VPS50-215ENST00000480943 LINC00612Q8N6U2 182 aa4.25□□□□□ -1.73
VPS50-215ENST00000480943 ZNF680Q8NEM1 530 aa4.25□□□□□ -1.73
VPS50-215ENST00000480943 Q8TAT8 98 aa4.25□□□□□ -1.73
VPS50-215ENST00000480943 GNPNAT1Q96EK6 184 aaPredicted RBP4.25□□□□□ -1.73
VPS50-215ENST00000480943 FAM19A4Q96LR4 140 aa4.25□□□□□ -1.73
VPS50-215ENST00000480943 VGLL1Q99990 258 aa4.25□□□□□ -1.73
VPS50-215ENST00000480943 Q9H3A6 140 aa4.25□□□□□ -1.73
VPS50-215ENST00000480943 WFDC1Q9HC57 220 aa4.25□□□□□ -1.73
VPS50-215ENST00000480943 ZNF492Q9P255 531 aa4.25□□□□□ -1.73
VPS50-215ENST00000480943 RPH3ALQ9UNE2 315 aa4.25□□□□□ -1.73
VPS50-215ENST00000480943 PKHD1P08F94 4074 aa4.25□□□□□ -1.73
VPS50-215ENST00000480943 DYNC1H1Q14204 4646 aaKnown RBP4.25□□□□□ -1.73
VPS50-215ENST00000480943 TRAV26-1A0A087WT03 109 aa4.24□□□□□ -1.73
VPS50-215ENST00000480943 TRGV1A0A0A0MS02 117 aa4.24□□□□□ -1.73
VPS50-215ENST00000480943 A0A1B0GVY2 172 aa4.24□□□□□ -1.73
VPS50-215ENST00000480943 ZNF324O75467 553 aaPredicted RBP4.24□□□□□ -1.73
VPS50-215ENST00000480943 PTTG1O95997 202 aa4.24□□□□□ -1.73
VPS50-215ENST00000480943 CSN1S1P47710 185 aa4.24□□□□□ -1.73
VPS50-215ENST00000480943 ZNF138P52744 262 aa4.24□□□□□ -1.73
VPS50-215ENST00000480943 CCL18P55774 89 aa4.24□□□□□ -1.73
VPS50-215ENST00000480943 TAS2R45P59539 299 aa4.24□□□□□ -1.73
VPS50-215ENST00000480943 RAB2AP61019 212 aa4.24□□□□□ -1.73
VPS50-215ENST00000480943 RANP62826 216 aaKnown RBP4.24□□□□□ -1.73
VPS50-215ENST00000480943 SOHLH1Q5JUK2 328 aa4.24□□□□□ -1.73
VPS50-215ENST00000480943 PAPPA-AS1Q5QFB9 102 aa4.24□□□□□ -1.73
VPS50-215ENST00000480943 SERTAD4-AS1Q5TG53 156 aa4.24□□□□□ -1.73
VPS50-215ENST00000480943 Q6ZQT7 251 aa4.24□□□□□ -1.73
VPS50-215ENST00000480943 EIF4E3Q8N5X7 224 aaKnown RBP4.24□□□□□ -1.73
VPS50-215ENST00000480943 ZFAND2AQ8N6M9 145 aa4.24□□□□□ -1.73
VPS50-215ENST00000480943 C11orf72Q8NBR9 251 aa4.24□□□□□ -1.73
VPS50-215ENST00000480943 GSN-AS1Q9NRJ2 163 aa4.24□□□□□ -1.73
VPS50-215ENST00000480943 TP53TG3Q9ULZ0 132 aa4.24□□□□□ -1.73
VPS50-215ENST00000480943 LINC00588Q9Y4M8 146 aa4.24□□□□□ -1.73
VPS50-215ENST00000480943 DNAH11Q96DT5 4516 aa4.23□□□□□ -1.73
VPS50-215ENST00000480943 TRGV2A0A075B6R0 118 aa4.23□□□□□ -1.73
VPS50-215ENST00000480943 IGHV1OR15-1A0A075B7D0 117 aa4.23□□□□□ -1.73
VPS50-215ENST00000480943 A0A1W2PPV4 95 aa4.23□□□□□ -1.73
VPS50-215ENST00000480943 RBAKDNA6NC62 111 aa4.23□□□□□ -1.73
VPS50-215ENST00000480943 HMGB3O15347 200 aaKnown RBP4.23□□□□□ -1.73
VPS50-215ENST00000480943 IGHV3-53P01767 116 aa4.23□□□□□ -1.73
VPS50-215ENST00000480943 M6PRP20645 277 aa4.23□□□□□ -1.73
VPS50-215ENST00000480943 TCL1AP56279 114 aa4.23□□□□□ -1.73
VPS50-215ENST00000480943 ZNF415Q09FC8 603 aa4.23□□□□□ -1.73
VPS50-215ENST00000480943 DAZ2Q13117 558 aaKnown RBP4.23□□□□□ -1.73
VPS50-215ENST00000480943 ACOT6Q3I5F7 207 aaPredicted RBP4.23□□□□□ -1.73
VPS50-215ENST00000480943 MUC21Q5SSG8 566 aa4.23□□□□□ -1.73
VPS50-215ENST00000480943 C1orf134Q5TEV5 83 aa4.23□□□□□ -1.73
VPS50-215ENST00000480943 WDR73Q6P4I2 378 aa4.23□□□□□ -1.73
VPS50-215ENST00000480943 LYPD1Q8N2G4 141 aa4.23□□□□□ -1.73
VPS50-215ENST00000480943 HSD17B11Q8NBQ5 300 aa4.23□□□□□ -1.73
VPS50-215ENST00000480943 ZNRF2Q8NHG8 242 aa4.23□□□□□ -1.73
VPS50-215ENST00000480943 RXFP4Q8TDU9 374 aa4.23□□□□□ -1.73
VPS50-215ENST00000480943 HYLS1Q96M11 299 aa4.23□□□□□ -1.73
VPS50-215ENST00000480943 LINC00467Q9BRT7 94 aa4.23□□□□□ -1.73
VPS50-215ENST00000480943 MED28Q9H204 178 aa4.23□□□□□ -1.73
VPS50-215ENST00000480943 MRPL16Q9NX20 251 aaKnown RBP4.23□□□□□ -1.73
VPS50-215ENST00000480943 KLF12Q9Y4X4 402 aa4.23□□□□□ -1.73
VPS50-215ENST00000480943 NBDYA0A0U1RRE5 68 aa4.22□□□□□ -1.73
VPS50-215ENST00000480943 SPINK4O60575 86 aa4.22□□□□□ -1.73
VPS50-215ENST00000480943 NMBP08949 121 aa4.22□□□□□ -1.73
VPS50-215ENST00000480943 CDC34P49427 236 aaPredicted RBP4.22□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms