RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 IGKV2D-29A0A075B6S2 120 aaPredicted RBP1.43□□□□□ -2.18
UPF3B-203ENST00000478840 NUPR2A6NF83 97 aa1.43□□□□□ -2.18
UPF3B-203ENST00000478840 J3QR89 54 aa1.43□□□□□ -2.18
UPF3B-203ENST00000478840 IGF2P01344 180 aa1.43□□□□□ -2.18
UPF3B-203ENST00000478840 FXYD4P59646 89 aa1.43□□□□□ -2.18
UPF3B-203ENST00000478840 IDO2Q6ZQW0 420 aa1.43□□□□□ -2.18
UPF3B-203ENST00000478840 M0R2Z0 102 aa1.42□□□□□ -2.18
UPF3B-203ENST00000478840 CDC42EP2O14613 210 aa1.42□□□□□ -2.18
UPF3B-203ENST00000478840 RBP4P02753 201 aa1.42□□□□□ -2.18
UPF3B-203ENST00000478840 HMGN1P05114 100 aa1.42□□□□□ -2.18
UPF3B-203ENST00000478840 IGLC6P0CF74 106 aa1.42□□□□□ -2.18
UPF3B-203ENST00000478840 ADCYAP1P18509 176 aa1.42□□□□□ -2.18
UPF3B-203ENST00000478840 RPL37AP61513 92 aaKnown RBP1.42□□□□□ -2.18
UPF3B-203ENST00000478840 RHOHQ15669 191 aa1.42□□□□□ -2.18
UPF3B-203ENST00000478840 TCEAL4Q96EI5 215 aa1.42□□□□□ -2.18
UPF3B-203ENST00000478840 PRG4Q92954 1404 aaPredicted RBP1.41□□□□□ -2.18
UPF3B-203ENST00000478840 HELZP42694 1942 aaKnown RBP1.41□□□□□ -2.18
UPF3B-203ENST00000478840 NCR2O95944 276 aa1.41□□□□□ -2.18
UPF3B-203ENST00000478840 NCS1P62166 190 aa1.41□□□□□ -2.18
UPF3B-203ENST00000478840 SARNPP82979 210 aaKnown RBP1.41□□□□□ -2.18
UPF3B-203ENST00000478840 DEFB132Q7Z7B7 95 aa1.41□□□□□ -2.18
UPF3B-203ENST00000478840 ZGRF1Q86YA3 2104 aa1.41□□□□□ -2.18
UPF3B-203ENST00000478840 Q8N6K4 173 aa1.41□□□□□ -2.18
UPF3B-203ENST00000478840 PFDN5Q99471 154 aa1.41□□□□□ -2.18
UPF3B-203ENST00000478840 SMIM3Q9BZL3 60 aa1.41□□□□□ -2.18
UPF3B-203ENST00000478840 CRCT1Q9UGL9 99 aa1.41□□□□□ -2.18
UPF3B-203ENST00000478840 SNRNP200O75643 2136 aaKnown RBP1.4□□□□□ -2.18
UPF3B-203ENST00000478840 EML5Q05BV3 1969 aa1.4□□□□□ -2.19
UPF3B-203ENST00000478840 TRPM7Q96QT4 1865 aa1.4□□□□□ -2.19
UPF3B-203ENST00000478840 CDK5RAP2Q96SN8 1893 aa1.4□□□□□ -2.19
UPF3B-203ENST00000478840 SYNJ1O43426 1573 aa1.4□□□□□ -2.19
UPF3B-203ENST00000478840 TRAV2A0A0B4J234 112 aa1.4□□□□□ -2.19
UPF3B-203ENST00000478840 TMEM30CPA0ZSE6 113 aa1.4□□□□□ -2.19
UPF3B-203ENST00000478840 COX4I1P13073 169 aa1.4□□□□□ -2.19
UPF3B-203ENST00000478840 MRPL35Q9NZE8 188 aaKnown RBP1.4□□□□□ -2.19
UPF3B-203ENST00000478840 CNTRLQ7Z7A1 2325 aa1.4□□□□□ -2.19
UPF3B-203ENST00000478840 LAMA4Q16363 1823 aa1.4□□□□□ -2.19
UPF3B-203ENST00000478840 M0R2P5 195 aa1.39□□□□□ -2.19
UPF3B-203ENST00000478840 LYPD5Q6UWN5 251 aa1.39□□□□□ -2.19
UPF3B-203ENST00000478840 ATP6V0E2Q8NHE4 81 aa1.39□□□□□ -2.19
UPF3B-203ENST00000478840 MRPL36Q9P0J6 103 aaKnown RBP1.39□□□□□ -2.19
UPF3B-203ENST00000478840 LSM2Q9Y333 95 aaKnown RBP1.39□□□□□ -2.19
UPF3B-203ENST00000478840 HMCN1Q96RW7 5635 aa1.38□□□□□ -2.19
UPF3B-203ENST00000478840 LRP5O75197 1615 aa1.38□□□□□ -2.19
UPF3B-203ENST00000478840 A0A0G2JMM0 328 aa1.38□□□□□ -2.19
UPF3B-203ENST00000478840 TPST1O60507 370 aa1.38□□□□□ -2.19
UPF3B-203ENST00000478840 CLLU1Q5K131 121 aa1.38□□□□□ -2.19
UPF3B-203ENST00000478840 ATP11AUNQ6ZP68 121 aa1.38□□□□□ -2.19
UPF3B-203ENST00000478840 SLC25A26Q70HW3 274 aa1.38□□□□□ -2.19
UPF3B-203ENST00000478840 DMAC1Q96GE9 116 aa1.38□□□□□ -2.19
UPF3B-203ENST00000478840 VPS25Q9BRG1 176 aa1.38□□□□□ -2.19
UPF3B-203ENST00000478840 KRTAP4-1Q9BYQ7 146 aa1.38□□□□□ -2.19
UPF3B-203ENST00000478840 SAR1AQ9NR31 198 aa1.38□□□□□ -2.19
UPF3B-203ENST00000478840 TAS2R8Q9NYW2 309 aa1.38□□□□□ -2.19
UPF3B-203ENST00000478840 CITO14578 2027 aa1.38□□□□□ -2.19
UPF3B-203ENST00000478840 ASCC3Q8N3C0 2202 aaKnown RBP1.38□□□□□ -2.19
UPF3B-203ENST00000478840 CPDO75976 1380 aa1.37□□□□□ -2.19
UPF3B-203ENST00000478840 TRBV20-1A0A075B6N2 111 aa1.37□□□□□ -2.19
UPF3B-203ENST00000478840 LINC00694P0DN24 101 aa1.37□□□□□ -2.19
UPF3B-203ENST00000478840 Q6ZQY7 126 aa1.37□□□□□ -2.19
UPF3B-203ENST00000478840 PPDPFLQ8WWR9 84 aa1.37□□□□□ -2.19
UPF3B-203ENST00000478840 TPT1P8Q9HAU6 139 aa1.37□□□□□ -2.19
UPF3B-203ENST00000478840 NINQ8N4C6 2090 aa1.36□□□□□ -2.19
UPF3B-203ENST00000478840 A0A1W2PPM0 123 aa1.36□□□□□ -2.19
UPF3B-203ENST00000478840 IGKCP01834 107 aa1.36□□□□□ -2.19
UPF3B-203ENST00000478840 CCDC58Q4VC31 144 aa1.36□□□□□ -2.19
UPF3B-203ENST00000478840 XAF1Q6GPH4 301 aa1.36□□□□□ -2.19
UPF3B-203ENST00000478840 CTAGE3PQ8IX95 158 aa1.36□□□□□ -2.19
UPF3B-203ENST00000478840 ATOH7Q8N100 152 aa1.36□□□□□ -2.19
UPF3B-203ENST00000478840 FBN3Q75N90 2809 aa1.35□□□□□ -2.19
UPF3B-203ENST00000478840 FAM236AA0A1B0GUQ0 79 aa1.35□□□□□ -2.19
UPF3B-203ENST00000478840 FAM236BA0A1B0GV22 79 aa1.35□□□□□ -2.19
UPF3B-203ENST00000478840 CCDC171Q6TFL3 1326 aa1.35□□□□□ -2.19
UPF3B-203ENST00000478840 SOGA1O94964 1423 aa1.34□□□□□ -2.19
UPF3B-203ENST00000478840 FCGBPQ9Y6R7 5405 aaPredicted RBP1.34□□□□□ -2.19
UPF3B-203ENST00000478840 TRBV30A0A0K0K1B3 111 aa1.34□□□□□ -2.19
UPF3B-203ENST00000478840 HIGD1CA8MV81 97 aa1.34□□□□□ -2.19
UPF3B-203ENST00000478840 IL7P13232 177 aa1.34□□□□□ -2.19
UPF3B-203ENST00000478840 POLR2JP52435 117 aaKnown RBP1.34□□□□□ -2.19
UPF3B-203ENST00000478840 UNQ5815/PRO19632Q6UWF5 114 aa1.34□□□□□ -2.19
UPF3B-203ENST00000478840 SNX29P2Q8IUI4 249 aa1.34□□□□□ -2.19
UPF3B-203ENST00000478840 TSTD1Q8NFU3 115 aa1.34□□□□□ -2.19
UPF3B-203ENST00000478840 CCL19Q99731 98 aa1.34□□□□□ -2.19
UPF3B-203ENST00000478840 ATG5Q9H1Y0 275 aa1.34□□□□□ -2.19
UPF3B-203ENST00000478840 NOP16Q9Y3C1 178 aaKnown RBP1.34□□□□□ -2.19
UPF3B-203ENST00000478840 MED12Q93074 2177 aa1.34□□□□□ -2.2
UPF3B-203ENST00000478840 PLXNA2O75051 1894 aa1.33□□□□□ -2.2
UPF3B-203ENST00000478840 TRBV10-1A0A0K0K1A3 114 aa1.33□□□□□ -2.2
UPF3B-203ENST00000478840 NBDYA0A0U1RRE5 68 aa1.33□□□□□ -2.2
UPF3B-203ENST00000478840 CXorf51AA0A1B0GTR3 108 aa1.33□□□□□ -2.2
UPF3B-203ENST00000478840 K7ERU9 68 aa1.33□□□□□ -2.2
UPF3B-203ENST00000478840 DYNLRB2Q8TF09 96 aa1.33□□□□□ -2.2
UPF3B-203ENST00000478840 BICRAQ9NZM4 1560 aa1.33□□□□□ -2.2
UPF3B-203ENST00000478840 TENM1Q9UKZ4 2725 aa1.32□□□□□ -2.2
UPF3B-203ENST00000478840 ERCC6Q03468 1493 aa1.32□□□□□ -2.2
UPF3B-203ENST00000478840 CASZ1Q86V15 1759 aa1.32□□□□□ -2.2
UPF3B-203ENST00000478840 K7EIL1 84 aa1.32□□□□□ -2.2
UPF3B-203ENST00000478840 C10orf99Q6UWK7 81 aa1.32□□□□□ -2.2
UPF3B-203ENST00000478840 TSC22D3Q99576 134 aa1.32□□□□□ -2.2
UPF3B-203ENST00000478840 ADGRB1O14514 1584 aa1.32□□□□□ -2.2
Retrieved 100 of 20,778 RNA–protein pairs in 224.2 ms