RNA–Protein interactions for RNA: ENST00000477528.5

HDAC6-220, Transcript of histone deacetylase 6, humanhuman

TSL 1 (best)

Gene HDAC6, Length 4,832 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-220ENST00000477528 C20orf78Q9BR46 151 aa11.34□□□□□ -0.59
HDAC6-220ENST00000477528 IGKV3OR2-268A0A0C4DH90 116 aa11.33□□□□□ -0.6
HDAC6-220ENST00000477528 PRAC2D3DTV9 90 aa11.33□□□□□ -0.6
HDAC6-220ENST00000477528 LINC01619G3V211 115 aa11.33□□□□□ -0.6
HDAC6-220ENST00000477528 BLCAPP62952 87 aa11.33□□□□□ -0.6
HDAC6-220ENST00000477528 MYCNOSP40205 109 aa11.33□□□□□ -0.6
HDAC6-220ENST00000477528 C11orf71Q6IPW1 123 aa11.33□□□□□ -0.6
HDAC6-220ENST00000477528 LINC00173Q6ZV60 143 aa11.33□□□□□ -0.6
HDAC6-220ENST00000477528 F6UB75 175 aa11.33□□□□□ -0.6
HDAC6-220ENST00000477528 TCTEX1D4Q5JR98 221 aa11.33□□□□□ -0.6
HDAC6-220ENST00000477528 PLXNB1O43157 2135 aa11.33□□□□□ -0.6
HDAC6-220ENST00000477528 TP53TG1Q9Y2A0 90 aa11.32□□□□□ -0.6
HDAC6-220ENST00000477528 CTRLP40313 264 aa11.32□□□□□ -0.6
HDAC6-220ENST00000477528 EBI3Q14213 229 aa11.32□□□□□ -0.6
HDAC6-220ENST00000477528 MSRB1Q9NZV6 116 aa11.32□□□□□ -0.6
HDAC6-220ENST00000477528 Q96MF0 132 aa11.32□□□□□ -0.6
HDAC6-220ENST00000477528 VPREB3Q9UKI3 123 aa11.32□□□□□ -0.6
HDAC6-220ENST00000477528 GAGE1Q13065 139 aa11.32□□□□□ -0.6
HDAC6-220ENST00000477528 KLK9Q9UKQ9 250 aa11.32□□□□□ -0.6
HDAC6-220ENST00000477528 CHD9Q3L8U1 2897 aa11.31□□□□□ -0.6
HDAC6-220ENST00000477528 IGF2RP11717 2491 aa11.31□□□□□ -0.6
HDAC6-220ENST00000477528 LINC01545Q5VT33 79 aa11.31□□□□□ -0.6
HDAC6-220ENST00000477528 MRPL35Q9NZE8 188 aaKnown RBP11.31□□□□□ -0.6
HDAC6-220ENST00000477528 SAP30O75446 220 aa11.31□□□□□ -0.6
HDAC6-220ENST00000477528 GDF5OSQ5U4N7 250 aa11.31□□□□□ -0.6
HDAC6-220ENST00000477528 PLEKHB2Q96CS7 222 aa11.31□□□□□ -0.6
HDAC6-220ENST00000477528 TNRC6BQ9UPQ9 1833 aaKnown RBP11.31□□□□□ -0.6
HDAC6-220ENST00000477528 C9orf47Q6ZRZ4 202 aa11.31□□□□□ -0.6
HDAC6-220ENST00000477528 TMEM141Q96I45 108 aa11.31□□□□□ -0.6
HDAC6-220ENST00000477528 SDHAF1A6NFY7 115 aa11.3□□□□□ -0.6
HDAC6-220ENST00000477528 AJUBAQ96IF1 538 aa11.3□□□□□ -0.6
HDAC6-220ENST00000477528 DKK2Q9UBU2 259 aa11.3□□□□□ -0.6
HDAC6-220ENST00000477528 TRAV12-2A0A075B6T6 113 aa11.3□□□□□ -0.6
HDAC6-220ENST00000477528 TRAV2A0A0B4J234 112 aa11.3□□□□□ -0.6
HDAC6-220ENST00000477528 IGHG2P01859 326 aa11.3□□□□□ -0.6
HDAC6-220ENST00000477528 BVES-AS1Q5T3Y7 98 aa11.3□□□□□ -0.6
HDAC6-220ENST00000477528 NPSP0C0P6 89 aa11.29□□□□□ -0.6
HDAC6-220ENST00000477528 PRORYQ9H606 182 aa11.29□□□□□ -0.6
HDAC6-220ENST00000477528 IGHV3-64A0A075B6Q5 118 aa11.29□□□□□ -0.6
HDAC6-220ENST00000477528 F8VRH5 84 aa11.29□□□□□ -0.6
HDAC6-220ENST00000477528 GATA1P15976 413 aaPredicted RBP11.29□□□□□ -0.6
HDAC6-220ENST00000477528 TMEM95Q3KNT9 176 aa11.29□□□□□ -0.6
HDAC6-220ENST00000477528 ZNF493Q6ZR52 646 aa11.29□□□□□ -0.6
HDAC6-220ENST00000477528 GNRH2O43555 120 aa11.29□□□□□ -0.6
HDAC6-220ENST00000477528 EMP1P54849 157 aa11.29□□□□□ -0.6
HDAC6-220ENST00000477528 SRSF2Q01130 221 aaKnown RBP11.29□□□□□ -0.6
HDAC6-220ENST00000477528 TRGV1A0A0A0MS02 117 aa11.29□□□□□ -0.6
HDAC6-220ENST00000477528 TMEM238C9JI98 176 aa11.29□□□□□ -0.6
HDAC6-220ENST00000477528 K7EMI3 77 aa11.29□□□□□ -0.6
HDAC6-220ENST00000477528 SIVA1O15304 175 aa11.29□□□□□ -0.6
HDAC6-220ENST00000477528 SFTA2Q6UW10 78 aa11.29□□□□□ -0.6
HDAC6-220ENST00000477528 TMEM262E9PQX1 116 aa11.28□□□□□ -0.6
HDAC6-220ENST00000477528 LGALS1P09382 135 aaKnown RBP11.28□□□□□ -0.6
HDAC6-220ENST00000477528 CCDC140Q96MF4 163 aa11.28□□□□□ -0.6
HDAC6-220ENST00000477528 HLA-DRB4P13762 266 aa11.28□□□□□ -0.6
HDAC6-220ENST00000477528 RPL36AP83881 106 aaKnown RBP11.28□□□□□ -0.6
HDAC6-220ENST00000477528 PMVKQ15126 192 aa11.28□□□□□ -0.6
HDAC6-220ENST00000477528 RPL36ALQ969Q0 106 aaKnown RBP11.28□□□□□ -0.6
HDAC6-220ENST00000477528 TP53TG3Q9ULZ0 132 aa11.28□□□□□ -0.6
HDAC6-220ENST00000477528 HLA-DRB4X5D2U9 266 aa11.28□□□□□ -0.6
HDAC6-220ENST00000477528 NSUN5P1Q3KNT7 163 aa11.28□□□□□ -0.6
HDAC6-220ENST00000477528 TRGV4A0A0C4DH28 118 aa11.28□□□□□ -0.6
HDAC6-220ENST00000477528 RHODO00212 210 aa11.28□□□□□ -0.6
HDAC6-220ENST00000477528 CRXO43186 299 aaPredicted RBP11.28□□□□□ -0.6
HDAC6-220ENST00000477528 A0A087WX48 190 aa11.27□□□□□ -0.61
HDAC6-220ENST00000477528 C19orf84I3L1E1 186 aa11.27□□□□□ -0.61
HDAC6-220ENST00000477528 C5orf42Q9H799 3197 aa11.27□□□□□ -0.61
HDAC6-220ENST00000477528 IGKV3D-20A0A0C4DH25 116 aa11.26□□□□□ -0.61
HDAC6-220ENST00000477528 C2orf70A6NJV1 201 aa11.26□□□□□ -0.61
HDAC6-220ENST00000477528 I3L3M4 83 aa11.26□□□□□ -0.61
HDAC6-220ENST00000477528 FOXI2Q6ZQN5 318 aa11.26□□□□□ -0.61
HDAC6-220ENST00000477528 UBE2E2Q96LR5 201 aa11.26□□□□□ -0.61
HDAC6-220ENST00000477528 NOTCH3Q9UM47 2321 aa11.26□□□□□ -0.61
HDAC6-220ENST00000477528 GAGE12BA1L429 117 aa11.26□□□□□ -0.61
HDAC6-220ENST00000477528 A8MWV9 139 aa11.26□□□□□ -0.61
HDAC6-220ENST00000477528 HOXD3P31249 432 aaPredicted RBP11.26□□□□□ -0.61
HDAC6-220ENST00000477528 DSCAMO60469 2012 aa11.26□□□□□ -0.61
HDAC6-220ENST00000477528 GAGE13Q4V321 117 aa11.26□□□□□ -0.61
HDAC6-220ENST00000477528 NEGR1Q7Z3B1 354 aa11.26□□□□□ -0.61
HDAC6-220ENST00000477528 MEGF9Q9H1U4 602 aa11.26□□□□□ -0.61
HDAC6-220ENST00000477528 CACNA1AO00555 2505 aa11.26□□□□□ -0.61
HDAC6-220ENST00000477528 C9orf118A6NHY6 69 aa11.26□□□□□ -0.61
HDAC6-220ENST00000477528 LINC01548A6NM66 108 aa11.26□□□□□ -0.61
HDAC6-220ENST00000477528 K7EMT4 169 aa11.26□□□□□ -0.61
HDAC6-220ENST00000477528 A6NDX4 124 aa11.25□□□□□ -0.61
HDAC6-220ENST00000477528 NAV3Q8IVL0 2385 aa11.25□□□□□ -0.61
HDAC6-220ENST00000477528 KNCNA6PVL3 124 aa11.25□□□□□ -0.61
HDAC6-220ENST00000477528 C1QTNF4Q9BXJ3 329 aa11.25□□□□□ -0.61
HDAC6-220ENST00000477528 SCRT2Q9NQ03 307 aa11.25□□□□□ -0.61
HDAC6-220ENST00000477528 ZNF80P51504 273 aaPredicted RBP11.24□□□□□ -0.61
HDAC6-220ENST00000477528 Q8N6K4 173 aa11.24□□□□□ -0.61
HDAC6-220ENST00000477528 TOMM7Q9P0U1 55 aa11.24□□□□□ -0.61
HDAC6-220ENST00000477528 TRAV16A0A0A6YYK6 109 aaPredicted RBP11.24□□□□□ -0.61
HDAC6-220ENST00000477528 MYMXA0A1B0GTQ4 84 aa11.24□□□□□ -0.61
HDAC6-220ENST00000477528 UNQ9165/PRO28630Q6UXU0 137 aa11.24□□□□□ -0.61
HDAC6-220ENST00000477528 ADARB2-AS1A8MUL3 147 aa11.24□□□□□ -0.61
HDAC6-220ENST00000477528 ERG28Q9UKR5 140 aa11.24□□□□□ -0.61
HDAC6-220ENST00000477528 XCL2Q9UBD3 114 aa11.23□□□□□ -0.61
HDAC6-220ENST00000477528 SPRY2O43597 315 aa11.23□□□□□ -0.61
HDAC6-220ENST00000477528 NRGNQ92686 78 aa11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms