RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 HSD17B11Q8NBQ5 300 aa8.29□□□□□ -1.08
MSH5-SAPCD1-205ENST00000476085 OR10G9Q8NGN4 311 aa8.29□□□□□ -1.08
MSH5-SAPCD1-205ENST00000476085 OR10G7Q8NGN6 311 aa8.29□□□□□ -1.08
MSH5-SAPCD1-205ENST00000476085 OTORQ9NRC9 128 aa8.29□□□□□ -1.08
MSH5-SAPCD1-205ENST00000476085 VPS13BQ7Z7G8 4022 aa8.28□□□□□ -1.08
MSH5-SAPCD1-205ENST00000476085 TRGV11A0A075B6L2 103 aa8.28□□□□□ -1.08
MSH5-SAPCD1-205ENST00000476085 A0A087WTM6 91 aa8.28□□□□□ -1.08
MSH5-SAPCD1-205ENST00000476085 TRAV4A0A0B4J268 109 aa8.28□□□□□ -1.08
MSH5-SAPCD1-205ENST00000476085 TRGV4A0A0C4DH28 118 aa8.28□□□□□ -1.08
MSH5-SAPCD1-205ENST00000476085 IGHV3-16A0A0C4DH30 117 aa8.28□□□□□ -1.08
MSH5-SAPCD1-205ENST00000476085 HMSDA8MTL9 139 aa8.28□□□□□ -1.08
MSH5-SAPCD1-205ENST00000476085 ARPC5O15511 151 aa8.28□□□□□ -1.08
MSH5-SAPCD1-205ENST00000476085 GNRH2O43555 120 aa8.28□□□□□ -1.08
MSH5-SAPCD1-205ENST00000476085 GYPEP15421 78 aa8.28□□□□□ -1.08
MSH5-SAPCD1-205ENST00000476085 ATP6V0CP27449 155 aa8.28□□□□□ -1.08
MSH5-SAPCD1-205ENST00000476085 FUSP35637 526 aaKnown RBP eCLIP8.28□□□□□ -1.083e-6■□□□□ 9.4
MSH5-SAPCD1-205ENST00000476085 UBE2L3P68036 154 aaKnown RBP8.28□□□□□ -1.08
MSH5-SAPCD1-205ENST00000476085 ZNF345Q14585 488 aa8.28□□□□□ -1.08
MSH5-SAPCD1-205ENST00000476085 FAM159AQ6UWV7 190 aa8.28□□□□□ -1.08
MSH5-SAPCD1-205ENST00000476085 LY96Q9Y6Y9 160 aa8.28□□□□□ -1.08
MSH5-SAPCD1-205ENST00000476085 FAT1Q14517 4588 aa8.27□□□□□ -1.09
MSH5-SAPCD1-205ENST00000476085 TRAV9-2A0A087WT02 112 aa8.27□□□□□ -1.09
MSH5-SAPCD1-205ENST00000476085 A0A0D9SG52 128 aa8.27□□□□□ -1.09
MSH5-SAPCD1-205ENST00000476085 PGPA6NDG6 321 aa8.27□□□□□ -1.09
MSH5-SAPCD1-205ENST00000476085 G3V3Q6 166 aa8.27□□□□□ -1.09
MSH5-SAPCD1-205ENST00000476085 ORM1P02763 201 aa8.27□□□□□ -1.09
MSH5-SAPCD1-205ENST00000476085 TIRAPP58753 221 aa8.27□□□□□ -1.09
MSH5-SAPCD1-205ENST00000476085 ERVFC1-1P60608 527 aa8.27□□□□□ -1.09
MSH5-SAPCD1-205ENST00000476085 FAM74A1Q5RGS3 127 aa8.27□□□□□ -1.09
MSH5-SAPCD1-205ENST00000476085 RPL7L1Q6DKI1 246 aaKnown RBP8.27□□□□□ -1.09
MSH5-SAPCD1-205ENST00000476085 WFDC10BQ8IUB3 73 aa8.27□□□□□ -1.09
MSH5-SAPCD1-205ENST00000476085 M0R2P5 195 aa8.26□□□□□ -1.09
MSH5-SAPCD1-205ENST00000476085 EIF3GO75821 320 aaKnown RBP eCLIP8.26□□□□□ -1.09
MSH5-SAPCD1-205ENST00000476085 SRIP30626 198 aa8.26□□□□□ -1.09
MSH5-SAPCD1-205ENST00000476085 CDC34P49427 236 aaPredicted RBP8.26□□□□□ -1.09
MSH5-SAPCD1-205ENST00000476085 KRTAP10-1P60331 282 aa8.26□□□□□ -1.09
MSH5-SAPCD1-205ENST00000476085 RAB2AP61019 212 aa8.26□□□□□ -1.09
MSH5-SAPCD1-205ENST00000476085 SUN5Q8TC36 379 aa8.26□□□□□ -1.09
MSH5-SAPCD1-205ENST00000476085 HYLS1Q96M11 299 aa8.26□□□□□ -1.09
MSH5-SAPCD1-205ENST00000476085 MSRB1Q9NZV6 116 aa8.26□□□□□ -1.09
MSH5-SAPCD1-205ENST00000476085 SRRM2Q9UQ35 2752 aaKnown RBP8.25□□□□□ -1.09
MSH5-SAPCD1-205ENST00000476085 TRAV8-1A0A0A6YYK1 113 aa8.25□□□□□ -1.09
MSH5-SAPCD1-205ENST00000476085 EREGO14944 169 aa8.25□□□□□ -1.09
MSH5-SAPCD1-205ENST00000476085 TYMSP04818 313 aa8.25□□□□□ -1.09
MSH5-SAPCD1-205ENST00000476085 GATA1P15976 413 aaPredicted RBP8.25□□□□□ -1.09
MSH5-SAPCD1-205ENST00000476085 KCNRGQ8N5I3 272 aa8.25□□□□□ -1.09
MSH5-SAPCD1-205ENST00000476085 ACTR3CQ9C0K3 210 aaPredicted RBP8.25□□□□□ -1.09
MSH5-SAPCD1-205ENST00000476085 TRAV21A0A0B4J279 112 aa8.24□□□□□ -1.09
MSH5-SAPCD1-205ENST00000476085 LOC100131303A0A0U1RQF7 123 aa8.24□□□□□ -1.09
MSH5-SAPCD1-205ENST00000476085 KANTRA0A1W2PQU2 76 aa8.24□□□□□ -1.09
MSH5-SAPCD1-205ENST00000476085 C9JCJ5 164 aa8.24□□□□□ -1.09
MSH5-SAPCD1-205ENST00000476085 SMLR1H3BR10 107 aa8.24□□□□□ -1.09
MSH5-SAPCD1-205ENST00000476085 CXorf1O96002 111 aa8.24□□□□□ -1.09
MSH5-SAPCD1-205ENST00000476085 STAG3L2P0CL84 134 aa8.24□□□□□ -1.09
MSH5-SAPCD1-205ENST00000476085 STAG3L3P0CL85 134 aa8.24□□□□□ -1.09
MSH5-SAPCD1-205ENST00000476085 EVI2AP22794 236 aa8.24□□□□□ -1.09
MSH5-SAPCD1-205ENST00000476085 EIF5AP63241 154 aaKnown RBP8.24□□□□□ -1.09
MSH5-SAPCD1-205ENST00000476085 AKR1C8PQ5T2L2 129 aa8.24□□□□□ -1.09
MSH5-SAPCD1-205ENST00000476085 Q6ZNX1 250 aa8.24□□□□□ -1.09
MSH5-SAPCD1-205ENST00000476085 GOLT1AQ6ZVE7 132 aa8.24□□□□□ -1.09
MSH5-SAPCD1-205ENST00000476085 OR4C5Q8NGB2 326 aa8.24□□□□□ -1.09
MSH5-SAPCD1-205ENST00000476085 TXNDC17Q9BRA2 123 aa8.24□□□□□ -1.09
MSH5-SAPCD1-205ENST00000476085 SH3BGRL3Q9H299 93 aa8.24□□□□□ -1.09
MSH5-SAPCD1-205ENST00000476085 C11orf21Q9P2W6 132 aa8.24□□□□□ -1.09
MSH5-SAPCD1-205ENST00000476085 HERC1Q15751 4861 aa8.24□□□□□ -1.09
MSH5-SAPCD1-205ENST00000476085 DMBT1Q9UGM3 2413 aaPredicted RBP8.23□□□□□ -1.09
MSH5-SAPCD1-205ENST00000476085 LRCOL1A6NCL2 159 aa8.23□□□□□ -1.09
MSH5-SAPCD1-205ENST00000476085 EPM2AB3EWF7 344 aa8.23□□□□□ -1.09
MSH5-SAPCD1-205ENST00000476085 SH2D6Q7Z4S9 175 aa8.23□□□□□ -1.09
MSH5-SAPCD1-205ENST00000476085 TCTE3Q8IZS6 198 aa8.23□□□□□ -1.09
MSH5-SAPCD1-205ENST00000476085 CMTM2Q8TAZ6 248 aa8.23□□□□□ -1.09
MSH5-SAPCD1-205ENST00000476085 RAB24Q969Q5 203 aa8.23□□□□□ -1.09
MSH5-SAPCD1-205ENST00000476085 PTH2Q96A98 100 aa8.23□□□□□ -1.09
MSH5-SAPCD1-205ENST00000476085 TREM1Q9NP99 234 aa8.23□□□□□ -1.09
MSH5-SAPCD1-205ENST00000476085 TMEM167BQ9NRX6 74 aa8.23□□□□□ -1.09
MSH5-SAPCD1-205ENST00000476085 FLG2Q5D862 2391 aaPredicted RBP8.22□□□□□ -1.09
MSH5-SAPCD1-205ENST00000476085 BCL2L11O43521 198 aa8.22□□□□□ -1.09
MSH5-SAPCD1-205ENST00000476085 PFDN1O60925 122 aa8.22□□□□□ -1.09
MSH5-SAPCD1-205ENST00000476085 IGLV2-11P01706 119 aa8.22□□□□□ -1.09
MSH5-SAPCD1-205ENST00000476085 CRYGDP07320 174 aa8.22□□□□□ -1.09
MSH5-SAPCD1-205ENST00000476085 ARL14EPLP0DKL9 152 aa8.22□□□□□ -1.09
MSH5-SAPCD1-205ENST00000476085 ZNF80P51504 273 aaPredicted RBP8.22□□□□□ -1.09
MSH5-SAPCD1-205ENST00000476085 GNG5P63218 68 aa8.22□□□□□ -1.09
MSH5-SAPCD1-205ENST00000476085 LINC01556Q5JQF7 62 aa8.22□□□□□ -1.09
MSH5-SAPCD1-205ENST00000476085 DPPA3Q6W0C5 159 aa8.22□□□□□ -1.09
MSH5-SAPCD1-205ENST00000476085 C10orf126Q8N4M7 172 aa8.22□□□□□ -1.09
MSH5-SAPCD1-205ENST00000476085 OR11H4Q8NGC9 324 aa8.22□□□□□ -1.09
MSH5-SAPCD1-205ENST00000476085 PCNPQ8WW12 178 aaKnown RBP8.22□□□□□ -1.09
MSH5-SAPCD1-205ENST00000476085 KCNS1Q96KK3 526 aa8.22□□□□□ -1.09
MSH5-SAPCD1-205ENST00000476085 SDF2L1Q9HCN8 221 aa8.22□□□□□ -1.09
MSH5-SAPCD1-205ENST00000476085 CYTL1Q9NRR1 136 aa8.22□□□□□ -1.09
MSH5-SAPCD1-205ENST00000476085 NAGKQ9UJ70 344 aa8.22□□□□□ -1.09
MSH5-SAPCD1-205ENST00000476085 IGHV3-38A0A0C4DH36 116 aa8.21□□□□□ -1.1
MSH5-SAPCD1-205ENST00000476085 CTXND1A0A1B0GTU2 59 aa8.21□□□□□ -1.1
MSH5-SAPCD1-205ENST00000476085 SERTM2A0A1B0GWG4 89 aa8.21□□□□□ -1.1
MSH5-SAPCD1-205ENST00000476085 IBA57-AS1B1ANH7 110 aa8.21□□□□□ -1.1
MSH5-SAPCD1-205ENST00000476085 F6UZH7 168 aa8.21□□□□□ -1.1
MSH5-SAPCD1-205ENST00000476085 HMGB3O15347 200 aaKnown RBP8.21□□□□□ -1.1
MSH5-SAPCD1-205ENST00000476085 RS1O15537 224 aa8.21□□□□□ -1.1
MSH5-SAPCD1-205ENST00000476085 CIDEAO60543 219 aa8.21□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 71.7 ms