RNA–Protein interactions for RNA: ENST00000473099.1

VPS13D-205, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 461 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-205ENST00000473099 HBBP68871 147 aa9.49□□□□□ -0.89
VPS13D-205ENST00000473099 DNLZQ5SXM8 178 aa9.49□□□□□ -0.89
VPS13D-205ENST00000473099 MRPL54Q6P161 138 aaKnown RBP9.49□□□□□ -0.89
VPS13D-205ENST00000473099 PGLYRP4Q96LB8 373 aa9.49□□□□□ -0.89
VPS13D-205ENST00000473099 TRAPPC1Q9Y5R8 145 aa9.49□□□□□ -0.89
VPS13D-205ENST00000473099 TENM1Q9UKZ4 2725 aa9.48□□□□□ -0.89
VPS13D-205ENST00000473099 TMSB15BA0A087X1C1 80 aa9.48□□□□□ -0.89
VPS13D-205ENST00000473099 IGKV3D-20A0A0C4DH25 116 aa9.48□□□□□ -0.89
VPS13D-205ENST00000473099 A0A1B0GXF2 115 aa9.48□□□□□ -0.89
VPS13D-205ENST00000473099 J3KRW8 73 aa9.48□□□□□ -0.89
VPS13D-205ENST00000473099 GZMBP10144 247 aa9.48□□□□□ -0.89
VPS13D-205ENST00000473099 SPINK13Q1W4C9 94 aa9.48□□□□□ -0.89
VPS13D-205ENST00000473099 GFI1BQ5VTD9 330 aa9.48□□□□□ -0.89
VPS13D-205ENST00000473099 FAM159AQ6UWV7 190 aa9.48□□□□□ -0.89
VPS13D-205ENST00000473099 GTSCR1Q86UQ5 136 aa9.48□□□□□ -0.89
VPS13D-205ENST00000473099 NOTCH3Q9UM47 2321 aa9.48□□□□□ -0.89
VPS13D-205ENST00000473099 SNURFLB1AK76 121 aa9.47□□□□□ -0.89
VPS13D-205ENST00000473099 SPINK4O60575 86 aa9.47□□□□□ -0.89
VPS13D-205ENST00000473099 TRGC2P03986 189 aa9.47□□□□□ -0.89
VPS13D-205ENST00000473099 OR5AL1P0C617 328 aa9.47□□□□□ -0.89
VPS13D-205ENST00000473099 TDRG1Q3Y452 100 aa9.47□□□□□ -0.89
VPS13D-205ENST00000473099 TRPT1Q86TN4 253 aaKnown RBP9.47□□□□□ -0.89
VPS13D-205ENST00000473099 CNFNQ9BYD5 112 aa9.47□□□□□ -0.89
VPS13D-205ENST00000473099 C11orf21Q9P2W6 132 aa9.47□□□□□ -0.89
VPS13D-205ENST00000473099 NBEAL1Q6ZS30 2694 aa9.47□□□□□ -0.89
VPS13D-205ENST00000473099 TRAV12-3A0A0B4J271 114 aa9.46□□□□□ -0.9
VPS13D-205ENST00000473099 M0R2Z0 102 aa9.46□□□□□ -0.9
VPS13D-205ENST00000473099 ZNF324O75467 553 aaPredicted RBP9.46□□□□□ -0.9
VPS13D-205ENST00000473099 ASIPP42127 132 aa9.46□□□□□ -0.9
VPS13D-205ENST00000473099 RAB4BP61018 213 aa9.46□□□□□ -0.9
VPS13D-205ENST00000473099 CACNG7P62955 275 aa9.46□□□□□ -0.9
VPS13D-205ENST00000473099 ANXA2RQ3ZCQ2 193 aa9.46□□□□□ -0.9
VPS13D-205ENST00000473099 LYZL1Q6UWQ5 148 aa9.46□□□□□ -0.9
VPS13D-205ENST00000473099 TMEM136Q6ZRR5 245 aa9.46□□□□□ -0.9
VPS13D-205ENST00000473099 GATD1Q8NB37 220 aa9.46□□□□□ -0.9
VPS13D-205ENST00000473099 FRZBQ92765 325 aa9.46□□□□□ -0.9
VPS13D-205ENST00000473099 TPPP3Q9BW30 176 aa9.46□□□□□ -0.9
VPS13D-205ENST00000473099 SSBP4Q9BWG4 385 aaPredicted RBP9.46□□□□□ -0.9
VPS13D-205ENST00000473099 ZMAT5Q9UDW3 170 aaKnown RBP9.46□□□□□ -0.9
VPS13D-205ENST00000473099 NAGKQ9UJ70 344 aa9.46□□□□□ -0.9
VPS13D-205ENST00000473099 GRIFINA4D1Z8 144 aa9.45□□□□□ -0.9
VPS13D-205ENST00000473099 SNAI2O43623 268 aa9.45□□□□□ -0.9
VPS13D-205ENST00000473099 INSP01308 110 aa9.45□□□□□ -0.9
VPS13D-205ENST00000473099 CD7P09564 240 aa9.45□□□□□ -0.9
VPS13D-205ENST00000473099 ARMS2P0C7Q2 107 aa9.45□□□□□ -0.9
VPS13D-205ENST00000473099 S100A4P26447 101 aaKnown RBP9.45□□□□□ -0.9
VPS13D-205ENST00000473099 FABP9Q0Z7S8 132 aa9.45□□□□□ -0.9
VPS13D-205ENST00000473099 ZNF124Q15973 351 aa9.45□□□□□ -0.9
VPS13D-205ENST00000473099 MORN3Q6PF18 240 aaPredicted RBP9.45□□□□□ -0.9
VPS13D-205ENST00000473099 C1QTNF4Q9BXJ3 329 aa9.45□□□□□ -0.9
VPS13D-205ENST00000473099 MRPL18Q9H0U6 180 aaKnown RBP9.45□□□□□ -0.9
VPS13D-205ENST00000473099 C19orf73Q9NVV2 129 aa9.45□□□□□ -0.9
VPS13D-205ENST00000473099 MUC4Q99102 2169 aa9.45□□□□□ -0.9
VPS13D-205ENST00000473099 TRGV11A0A075B6L2 103 aa9.44□□□□□ -0.9
VPS13D-205ENST00000473099 IGHV1OR15-1A0A075B7D0 117 aa9.44□□□□□ -0.9
VPS13D-205ENST00000473099 RBMY1BA6NDE4 496 aaKnown RBP9.44□□□□□ -0.9
VPS13D-205ENST00000473099 RBMY1EA6NEQ0 496 aaKnown RBP9.44□□□□□ -0.9
VPS13D-205ENST00000473099 S100A6P06703 90 aa9.44□□□□□ -0.9
VPS13D-205ENST00000473099 RBMY1DP0C7P1 496 aaKnown RBP9.44□□□□□ -0.9
VPS13D-205ENST00000473099 CAMPP49913 170 aa9.44□□□□□ -0.9
VPS13D-205ENST00000473099 KIR3DS1Q14943 382 aa9.44□□□□□ -0.9
VPS13D-205ENST00000473099 ZNF575Q86XF7 245 aa9.44□□□□□ -0.9
VPS13D-205ENST00000473099 TMEM256Q8N2U0 113 aa9.44□□□□□ -0.9
VPS13D-205ENST00000473099 LINC00467Q9BRT7 94 aa9.44□□□□□ -0.9
VPS13D-205ENST00000473099 IGHV4-4A0A075B6R2 117 aa9.43□□□□□ -0.9
VPS13D-205ENST00000473099 TRAV12-2A0A075B6T6 113 aa9.43□□□□□ -0.9
VPS13D-205ENST00000473099 PHOX2AO14813 284 aa9.43□□□□□ -0.9
VPS13D-205ENST00000473099 CRXO43186 299 aaPredicted RBP9.43□□□□□ -0.9
VPS13D-205ENST00000473099 APCSP02743 223 aa9.43□□□□□ -0.9
VPS13D-205ENST00000473099 PRR31Q5SQ13 230 aa9.43□□□□□ -0.9
VPS13D-205ENST00000473099 MUC21Q5SSG8 566 aa9.43□□□□□ -0.9
VPS13D-205ENST00000473099 ZNF493Q6ZR52 646 aa9.43□□□□□ -0.9
VPS13D-205ENST00000473099 SMIM15Q7Z3B0 74 aa9.43□□□□□ -0.9
VPS13D-205ENST00000473099 H3BVH4 76 aa9.42□□□□□ -0.9
VPS13D-205ENST00000473099 HIST1H2BKO60814 126 aa9.42□□□□□ -0.9
VPS13D-205ENST00000473099 HIST1H2BJP06899 126 aa9.42□□□□□ -0.9
VPS13D-205ENST00000473099 TRGC1P0CF51 173 aa9.42□□□□□ -0.9
VPS13D-205ENST00000473099 HIST1H2BOP23527 126 aa9.42□□□□□ -0.9
VPS13D-205ENST00000473099 HIST1H2BBP33778 126 aa9.42□□□□□ -0.9
VPS13D-205ENST00000473099 HIST1H2BDP58876 126 aa9.42□□□□□ -0.9
VPS13D-205ENST00000473099 HIST1H2BCP62807 126 aa9.42□□□□□ -0.9
VPS13D-205ENST00000473099 TWIST1Q15672 202 aa9.42□□□□□ -0.9
VPS13D-205ENST00000473099 HIST2H2BEQ16778 126 aa9.42□□□□□ -0.9
VPS13D-205ENST00000473099 HIST2H2BFQ5QNW6 126 aaPredicted RBP9.42□□□□□ -0.9
VPS13D-205ENST00000473099 HIST1H2BHQ93079 126 aa9.42□□□□□ -0.9
VPS13D-205ENST00000473099 HIST1H2BNQ99877 126 aa9.42□□□□□ -0.9
VPS13D-205ENST00000473099 HIST1H2BMQ99879 126 aa9.42□□□□□ -0.9
VPS13D-205ENST00000473099 PHLDA3Q9Y5J5 127 aa9.42□□□□□ -0.9
VPS13D-205ENST00000473099 IGLL1P15814 213 aa9.41□□□□□ -0.9
VPS13D-205ENST00000473099 NTF3P20783 257 aa9.41□□□□□ -0.9
VPS13D-205ENST00000473099 FXYD7P58549 80 aa9.41□□□□□ -0.9
VPS13D-205ENST00000473099 SPANXN1Q5VSR9 72 aa9.41□□□□□ -0.9
VPS13D-205ENST00000473099 Q6ZQT7 251 aa9.41□□□□□ -0.9
VPS13D-205ENST00000473099 ZFP82Q8N141 532 aa9.41□□□□□ -0.9
VPS13D-205ENST00000473099 SCRT2Q9NQ03 307 aa9.41□□□□□ -0.9
VPS13D-205ENST00000473099 FRMD6-AS1P0C7T7 363 aa9.4□□□□□ -0.9
VPS13D-205ENST00000473099 RNASE3P12724 160 aaKnown RBP9.4□□□□□ -0.9
VPS13D-205ENST00000473099 TMEM191AQ9H0A3 160 aa9.4□□□□□ -0.9
VPS13D-205ENST00000473099 IGHV3-16A0A0C4DH30 117 aa9.39□□□□□ -0.91
VPS13D-205ENST00000473099 CBY3A6NI87 242 aa9.39□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms