RNA–Protein interactions for RNA: ENST00000466192.5

COL9A3-205, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 2,194 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-205ENST00000466192 LGALS9O00182 355 aa13.78□□□□□ -0.2
COL9A3-205ENST00000466192 PMCHL1Q16048 86 aa13.78□□□□□ -0.2
COL9A3-205ENST00000466192 BATFQ16520 125 aa13.78□□□□□ -0.2
COL9A3-205ENST00000466192 DEFB136Q30KP8 78 aa13.78□□□□□ -0.2
COL9A3-205ENST00000466192 AMN1Q8IY45 258 aa13.78□□□□□ -0.2
COL9A3-205ENST00000466192 HIST1H1AQ02539 215 aaPredicted RBP13.77□□□□□ -0.21
COL9A3-205ENST00000466192 OR10J6PQ8NGY7 276 aa13.77□□□□□ -0.21
COL9A3-205ENST00000466192 DCANP1Q8TF63 244 aa13.77□□□□□ -0.21
COL9A3-205ENST00000466192 J3KRW8 73 aa13.76□□□□□ -0.21
COL9A3-205ENST00000466192 OVOL1O14753 267 aa13.76□□□□□ -0.21
COL9A3-205ENST00000466192 CSN3P07498 182 aa13.76□□□□□ -0.21
COL9A3-205ENST00000466192 C3orf79P0CE67 100 aa13.76□□□□□ -0.21
COL9A3-205ENST00000466192 F6UB75 175 aa13.76□□□□□ -0.21
COL9A3-205ENST00000466192 MSRB1Q9NZV6 116 aa13.76□□□□□ -0.21
COL9A3-205ENST00000466192 TFPI2P48307 235 aa13.75□□□□□ -0.21
COL9A3-205ENST00000466192 PRR9Q5T870 116 aa13.75□□□□□ -0.21
COL9A3-205ENST00000466192 FAM104BQ5XKR9 115 aa13.75□□□□□ -0.21
COL9A3-205ENST00000466192 Q8N976 141 aa13.75□□□□□ -0.21
COL9A3-205ENST00000466192 LINC00477Q96M19 166 aa13.75□□□□□ -0.21
COL9A3-205ENST00000466192 TCF21O43680 179 aa13.75□□□□□ -0.21
COL9A3-205ENST00000466192 HIST2H2BDQ6DRA6 164 aa13.75□□□□□ -0.21
COL9A3-205ENST00000466192 WFDC3Q8IUB2 231 aa13.75□□□□□ -0.21
COL9A3-205ENST00000466192 CHCHD1Q96BP2 118 aaKnown RBP13.75□□□□□ -0.21
COL9A3-205ENST00000466192 NOTCH2Q04721 2471 aa13.75□□□□□ -0.21
COL9A3-205ENST00000466192 D6R8Y8 96 aa13.74□□□□□ -0.21
COL9A3-205ENST00000466192 SLURP1P55000 103 aa13.74□□□□□ -0.21
COL9A3-205ENST00000466192 SMR3AQ99954 134 aa13.74□□□□□ -0.21
COL9A3-205ENST00000466192 LENEPQ9Y5L5 61 aa13.74□□□□□ -0.21
COL9A3-205ENST00000466192 C2orf70A6NJV1 201 aa13.73□□□□□ -0.21
COL9A3-205ENST00000466192 OR8A1Q8NGG7 326 aa13.73□□□□□ -0.21
COL9A3-205ENST00000466192 MS4A6AQ9H2W1 248 aa13.73□□□□□ -0.21
COL9A3-205ENST00000466192 OTOGQ6ZRI0 2925 aa13.73□□□□□ -0.21
COL9A3-205ENST00000466192 IGHV1-24A0A0C4DH33 117 aa13.73□□□□□ -0.21
COL9A3-205ENST00000466192 C4orf3Q8WVX3 66 aa13.73□□□□□ -0.21
COL9A3-205ENST00000466192 CNFNQ9BYD5 112 aa13.73□□□□□ -0.21
COL9A3-205ENST00000466192 MRPL51Q4U2R6 128 aaKnown RBP13.72□□□□□ -0.21
COL9A3-205ENST00000466192 KHDC1LQ5JSQ8 128 aa13.72□□□□□ -0.21
COL9A3-205ENST00000466192 EBLN2Q6P2I7 272 aa13.72□□□□□ -0.21
COL9A3-205ENST00000466192 ID1P41134 155 aa13.72□□□□□ -0.21
COL9A3-205ENST00000466192 ADAMTSL5Q6ZMM2 481 aa13.72□□□□□ -0.21
COL9A3-205ENST00000466192 ZFAND2AQ8N6M9 145 aa13.72□□□□□ -0.21
COL9A3-205ENST00000466192 OR11H1Q8NG94 326 aa13.72□□□□□ -0.21
COL9A3-205ENST00000466192 DUX3Q96PT4 197 aa13.72□□□□□ -0.21
COL9A3-205ENST00000466192 SORL1Q92673 2214 aa13.72□□□□□ -0.21
COL9A3-205ENST00000466192 LINC01619G3V211 115 aa13.71□□□□□ -0.21
COL9A3-205ENST00000466192 ORMDL3Q8N138 153 aa13.71□□□□□ -0.21
COL9A3-205ENST00000466192 FAM19A4Q96LR4 140 aa13.71□□□□□ -0.21
COL9A3-205ENST00000466192 UQCR10Q9UDW1 63 aa13.71□□□□□ -0.21
COL9A3-205ENST00000466192 SAMD13Q5VXD3 122 aa13.71□□□□□ -0.22
COL9A3-205ENST00000466192 ORAOV1Q8WV07 137 aa13.71□□□□□ -0.22
COL9A3-205ENST00000466192 PRELID3AQ96N28 172 aa13.71□□□□□ -0.22
COL9A3-205ENST00000466192 SETD2Q9BYW2 2564 aaPredicted RBP13.7□□□□□ -0.22
COL9A3-205ENST00000466192 C20orf202A1L168 122 aa13.7□□□□□ -0.22
COL9A3-205ENST00000466192 KLHL30-AS1Q8NEE0 82 aa13.7□□□□□ -0.22
COL9A3-205ENST00000466192 PRSS3P2Q8NHM4 247 aa13.7□□□□□ -0.22
COL9A3-205ENST00000466192 TMEM191AQ9H0A3 160 aa13.7□□□□□ -0.22
COL9A3-205ENST00000466192 U3KQK5 164 aa13.7□□□□□ -0.22
COL9A3-205ENST00000466192 HIVEP2P31629 2446 aa13.7□□□□□ -0.22
COL9A3-205ENST00000466192 LOC389332A0A1B0GUA5 103 aa13.69□□□□□ -0.22
COL9A3-205ENST00000466192 SMKR1H3BMG3 65 aa13.69□□□□□ -0.22
COL9A3-205ENST00000466192 RNASE1P07998 156 aaKnown RBP13.69□□□□□ -0.22
COL9A3-205ENST00000466192 SPATA45Q537H7 98 aa13.69□□□□□ -0.22
COL9A3-205ENST00000466192 STPG4Q8N801 248 aa13.69□□□□□ -0.22
COL9A3-205ENST00000466192 OR1N2Q8NGR9 330 aa13.69□□□□□ -0.22
COL9A3-205ENST00000466192 K7EQG2 157 aa13.69□□□□□ -0.22
COL9A3-205ENST00000466192 CKS2P33552 79 aa13.69□□□□□ -0.22
COL9A3-205ENST00000466192 IFI27P40305 119 aaPredicted RBP13.69□□□□□ -0.22
COL9A3-205ENST00000466192 KIR3DS1Q14943 382 aa13.69□□□□□ -0.22
COL9A3-205ENST00000466192 OR10AG1Q8NH19 301 aa13.69□□□□□ -0.22
COL9A3-205ENST00000466192 DPF1Q92782 380 aa13.69□□□□□ -0.22
COL9A3-205ENST00000466192 AP5S1Q9NUS5 200 aa13.69□□□□□ -0.22
COL9A3-205ENST00000466192 TMEM160Q9NX00 188 aa13.69□□□□□ -0.22
COL9A3-205ENST00000466192 AGRNO00468 2067 aa13.69□□□□□ -0.22
COL9A3-205ENST00000466192 LEPROTL1O95214 131 aa13.68□□□□□ -0.22
COL9A3-205ENST00000466192 NCR2O95944 276 aa13.68□□□□□ -0.22
COL9A3-205ENST00000466192 ZNF688P0C7X2 276 aa13.68□□□□□ -0.22
COL9A3-205ENST00000466192 IGLC3P0DOY3 106 aa13.68□□□□□ -0.22
COL9A3-205ENST00000466192 RBX1P62877 108 aa13.68□□□□□ -0.22
COL9A3-205ENST00000466192 LINC00173Q6ZV60 143 aa13.68□□□□□ -0.22
COL9A3-205ENST00000466192 LAMTOR2Q9Y2Q5 125 aa13.68□□□□□ -0.22
COL9A3-205ENST00000466192 RNASE4P34096 147 aaKnown RBP13.68□□□□□ -0.22
COL9A3-205ENST00000466192 SCGB2A2Q13296 93 aa13.68□□□□□ -0.22
COL9A3-205ENST00000466192 FA2HQ7L5A8 372 aa13.68□□□□□ -0.22
COL9A3-205ENST00000466192 TIMM8BQ9Y5J9 83 aaPredicted RBP13.68□□□□□ -0.22
COL9A3-205ENST00000466192 TRAV21A0A0B4J279 112 aa13.67□□□□□ -0.22
COL9A3-205ENST00000466192 PSMG4Q5JS54 123 aa13.67□□□□□ -0.22
COL9A3-205ENST00000466192 ATOH7Q8N100 152 aa13.67□□□□□ -0.22
COL9A3-205ENST00000466192 C11orf44Q8N8P7 122 aa13.67□□□□□ -0.22
COL9A3-205ENST00000466192 RNF185Q96GF1 192 aa13.67□□□□□ -0.22
COL9A3-205ENST00000466192 H3BVH4 76 aa13.66□□□□□ -0.22
COL9A3-205ENST00000466192 CCL25O15444 150 aa13.66□□□□□ -0.22
COL9A3-205ENST00000466192 APRG1Q8IVJ8 170 aa13.66□□□□□ -0.22
COL9A3-205ENST00000466192 SIGLEC8Q9NYZ4 499 aa13.66□□□□□ -0.22
COL9A3-205ENST00000466192 HNRNPA3P51991 378 aaKnown RBP13.66□□□□□ -0.22
COL9A3-205ENST00000466192 PTTG1IPP53801 180 aa13.66□□□□□ -0.22
COL9A3-205ENST00000466192 RNASE8Q8TDE3 154 aaKnown RBP13.66□□□□□ -0.22
COL9A3-205ENST00000466192 DLX4Q92988 240 aaPredicted RBP13.66□□□□□ -0.22
COL9A3-205ENST00000466192 TMEM70Q9BUB7 260 aa13.66□□□□□ -0.22
COL9A3-205ENST00000466192 WNK1Q9H4A3 2382 aa13.66□□□□□ -0.22
COL9A3-205ENST00000466192 TRBV7-9A0A0J9YWB2 115 aa13.65□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 89.2 ms