RNA–Protein interactions for RNA: ENST00000465471.5

SKA3-205, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 5

Gene SKA3, Length 930 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-205ENST00000465471 BLOC1S1P78537 153 aa14.36□□□□□ -0.11
SKA3-205ENST00000465471 ZNF415Q09FC8 603 aa14.36□□□□□ -0.11
SKA3-205ENST00000465471 APLNQ9ULZ1 77 aa14.36□□□□□ -0.11
SKA3-205ENST00000465471 IGHV4-4A0A075B6R2 117 aa14.35□□□□□ -0.11
SKA3-205ENST00000465471 IGLL5B9A064 214 aa14.35□□□□□ -0.11
SKA3-205ENST00000465471 S100A9P06702 114 aaKnown RBP14.35□□□□□ -0.11
SKA3-205ENST00000465471 BCL2P10415 239 aa14.35□□□□□ -0.11
SKA3-205ENST00000465471 Q6ZTI0 123 aa14.35□□□□□ -0.11
SKA3-205ENST00000465471 TMEM183AQ8IXX5 376 aa14.35□□□□□ -0.11
SKA3-205ENST00000465471 ZC2HC1AQ96GY0 325 aa14.35□□□□□ -0.11
SKA3-205ENST00000465471 KCNS1Q96KK3 526 aa14.35□□□□□ -0.11
SKA3-205ENST00000465471 C18orf15Q96N68 181 aa14.35□□□□□ -0.11
SKA3-205ENST00000465471 MDFICQ9P1T7 246 aa14.35□□□□□ -0.11
SKA3-205ENST00000465471 NAGKQ9UJ70 344 aa14.35□□□□□ -0.11
SKA3-205ENST00000465471 IFNA1P01562 189 aa14.34□□□□□ -0.11
SKA3-205ENST00000465471 TYMSP04818 313 aa14.34□□□□□ -0.11
SKA3-205ENST00000465471 MEF2BQ02080 365 aaPredicted RBP14.34□□□□□ -0.11
SKA3-205ENST00000465471 FAM210BQ96KR6 192 aa14.34□□□□□ -0.11
SKA3-205ENST00000465471 IGHV3-16A0A0C4DH30 117 aa14.33□□□□□ -0.12
SKA3-205ENST00000465471 GAGE12BA1L429 117 aa14.33□□□□□ -0.12
SKA3-205ENST00000465471 GAGE7O76087 117 aa14.33□□□□□ -0.12
SKA3-205ENST00000465471 ATP5G1P05496 136 aa14.33□□□□□ -0.12
SKA3-205ENST00000465471 GAGE12FP0CL80 117 aa14.33□□□□□ -0.12
SKA3-205ENST00000465471 GAGE12GP0CL81 117 aa14.33□□□□□ -0.12
SKA3-205ENST00000465471 GAGE12IP0CL82 117 aa14.33□□□□□ -0.12
SKA3-205ENST00000465471 CRIP1P50238 77 aa14.33□□□□□ -0.12
SKA3-205ENST00000465471 LGALS9BQ3B8N2 356 aa14.33□□□□□ -0.12
SKA3-205ENST00000465471 SDF2L1Q9HCN8 221 aa14.33□□□□□ -0.12
SKA3-205ENST00000465471 GNRH2O43555 120 aa14.32□□□□□ -0.12
SKA3-205ENST00000465471 HTN3P15516 51 aa14.32□□□□□ -0.12
SKA3-205ENST00000465471 TAGLN2P37802 199 aaKnown RBP14.32□□□□□ -0.12
SKA3-205ENST00000465471 LINC00476Q8WZB0 136 aa14.32□□□□□ -0.12
SKA3-205ENST00000465471 MLST8Q9BVC4 326 aa14.32□□□□□ -0.12
SKA3-205ENST00000465471 TRGV1A0A0A0MS02 117 aa14.31□□□□□ -0.12
SKA3-205ENST00000465471 FABP5P3A8MUU1 101 aa14.31□□□□□ -0.12
SKA3-205ENST00000465471 ZNF674Q2M3X9 581 aa14.31□□□□□ -0.12
SKA3-205ENST00000465471 SPXQ9BT56 116 aa14.31□□□□□ -0.12
SKA3-205ENST00000465471 VAX2Q9UIW0 290 aa14.31□□□□□ -0.12
SKA3-205ENST00000465471 VPS13DQ5THJ4 4388 aa14.3□□□□□ -0.12
SKA3-205ENST00000465471 IGKV3D-20A0A0C4DH25 116 aa14.3□□□□□ -0.12
SKA3-205ENST00000465471 PDE6DO43924 150 aa14.3□□□□□ -0.12
SKA3-205ENST00000465471 RPL35P42766 123 aaKnown RBP14.3□□□□□ -0.12
SKA3-205ENST00000465471 DERL1Q9BUN8 251 aa14.3□□□□□ -0.12
SKA3-205ENST00000465471 FAM162BQ5T6X4 162 aa14.29□□□□□ -0.12
SKA3-205ENST00000465471 TEX261Q6UWH6 196 aa14.29□□□□□ -0.12
SKA3-205ENST00000465471 RASL10AQ92737 203 aa14.29□□□□□ -0.12
SKA3-205ENST00000465471 NDUFAF3Q9BU61 184 aa14.29□□□□□ -0.12
SKA3-205ENST00000465471 MRPL16Q9NX20 251 aaKnown RBP14.29□□□□□ -0.12
SKA3-205ENST00000465471 HYDINQ4G0P3 5121 aa14.29□□□□□ -0.12
SKA3-205ENST00000465471 SH2D1AO60880 128 aa14.28□□□□□ -0.12
SKA3-205ENST00000465471 TMEM88Q6PEY1 159 aa14.28□□□□□ -0.12
SKA3-205ENST00000465471 BAGE2Q86Y30 109 aa14.28□□□□□ -0.12
SKA3-205ENST00000465471 NHLRC2Q8NBF2 726 aa14.28□□□□□ -0.12
SKA3-205ENST00000465471 MUC4Q99102 2169 aa14.28□□□□□ -0.12
SKA3-205ENST00000465471 F5H768 121 aa14.27□□□□□ -0.13
SKA3-205ENST00000465471 HOXA5P20719 270 aa14.27□□□□□ -0.13
SKA3-205ENST00000465471 LGALS9CQ6DKI2 356 aa14.27□□□□□ -0.13
SKA3-205ENST00000465471 C9orf85Q96MD7 179 aa14.27□□□□□ -0.13
SKA3-205ENST00000465471 TRGV2A0A075B6R0 118 aa14.26□□□□□ -0.13
SKA3-205ENST00000465471 M0R2P5 195 aa14.26□□□□□ -0.13
SKA3-205ENST00000465471 RNASE3P12724 160 aaKnown RBP14.26□□□□□ -0.13
SKA3-205ENST00000465471 LINC01559Q495D7 138 aa14.26□□□□□ -0.13
SKA3-205ENST00000465471 ZNF575Q86XF7 245 aa14.26□□□□□ -0.13
SKA3-205ENST00000465471 RBFOX3A6NFN3 312 aa14.25□□□□□ -0.13
SKA3-205ENST00000465471 KRBOX1C9JBD0 128 aa14.25□□□□□ -0.13
SKA3-205ENST00000465471 IGLV2-8P01709 118 aa14.25□□□□□ -0.13
SKA3-205ENST00000465471 ZNF506Q5JVG8 444 aa14.25□□□□□ -0.13
SKA3-205ENST00000465471 DNLZQ5SXM8 178 aa14.25□□□□□ -0.13
SKA3-205ENST00000465471 TRBV20OR9-2A0A075B6H5 130 aa14.24□□□□□ -0.13
SKA3-205ENST00000465471 B4DEV8 164 aa14.24□□□□□ -0.13
SKA3-205ENST00000465471 CENPWQ5EE01 88 aa14.24□□□□□ -0.13
SKA3-205ENST00000465471 C15orf53Q8NAA6 179 aa14.24□□□□□ -0.13
SKA3-205ENST00000465471 PTH2Q96A98 100 aa14.24□□□□□ -0.13
SKA3-205ENST00000465471 SMIM12Q96EX1 92 aa14.24□□□□□ -0.13
SKA3-205ENST00000465471 MED9Q9NWA0 146 aa14.24□□□□□ -0.13
SKA3-205ENST00000465471 KMT2AQ03164 3969 aa14.23□□□□□ -0.13
SKA3-205ENST00000465471 ORM1P02763 201 aa14.23□□□□□ -0.13
SKA3-205ENST00000465471 RAB19A4D1S5 217 aa14.22□□□□□ -0.13
SKA3-205ENST00000465471 TMEM250H0YL14 139 aa14.22□□□□□ -0.13
SKA3-205ENST00000465471 NDUFS6O75380 124 aaKnown RBP14.22□□□□□ -0.13
SKA3-205ENST00000465471 LY6G6CO95867 125 aa14.22□□□□□ -0.13
SKA3-205ENST00000465471 POM121L12Q8N7R1 296 aa14.22□□□□□ -0.13
SKA3-205ENST00000465471 FAM210AQ96ND0 272 aa14.22□□□□□ -0.13
SKA3-205ENST00000465471 DNAH6Q9C0G6 4158 aa14.21□□□□□ -0.13
SKA3-205ENST00000465471 M0R036 132 aa14.21□□□□□ -0.13
SKA3-205ENST00000465471 ASIPP42127 132 aa14.21□□□□□ -0.13
SKA3-205ENST00000465471 OR5I1Q13606 314 aa14.21□□□□□ -0.13
SKA3-205ENST00000465471 IL36BQ9NZH7 164 aa14.21□□□□□ -0.13
SKA3-205ENST00000465471 NACAE9PAV3 2078 aa14.21□□□□□ -0.14
SKA3-205ENST00000465471 TRAV26-1A0A087WT03 109 aa14.2□□□□□ -0.14
SKA3-205ENST00000465471 TRAV4A0A0B4J268 109 aa14.2□□□□□ -0.14
SKA3-205ENST00000465471 H3BNG1 76 aa14.2□□□□□ -0.14
SKA3-205ENST00000465471 GNG4P50150 75 aa14.2□□□□□ -0.14
SKA3-205ENST00000465471 TOR2AQ5JU69 321 aa14.2□□□□□ -0.14
SKA3-205ENST00000465471 IGHV3-53P01767 116 aa14.19□□□□□ -0.14
SKA3-205ENST00000465471 CXCL1P09341 107 aa14.19□□□□□ -0.14
SKA3-205ENST00000465471 FHL2Q14192 279 aa14.19□□□□□ -0.14
SKA3-205ENST00000465471 ZNF876PQ49A33 203 aa14.19□□□□□ -0.14
SKA3-205ENST00000465471 PCNPQ8WW12 178 aaKnown RBP14.19□□□□□ -0.14
SKA3-205ENST00000465471 ZNF479Q96JC4 524 aa14.19□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms