RNA–Protein interactions for RNA: ENST00000463837.5

CCDC88B-204, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 5,235 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-204ENST00000463837 H3BUA1 57 aa14.97□□□□□ -0.01
CCDC88B-204ENST00000463837 TRBV25-1A0A075B6N4 114 aa14.96□□□□□ -0.01
CCDC88B-204ENST00000463837 VWC2LB2RUY7 222 aa14.96□□□□□ -0.01
CCDC88B-204ENST00000463837 PRSS29PA6NIE9 313 aa14.96□□□□□ -0.01
CCDC88B-204ENST00000463837 IGLV2-14P01704 120 aa14.96□□□□□ -0.01
CCDC88B-204ENST00000463837 PATE2Q6UY27 113 aa14.96□□□□□ -0.01
CCDC88B-204ENST00000463837 RNASE8Q8TDE3 154 aaKnown RBP14.96□□□□□ -0.02
CCDC88B-204ENST00000463837 IGLL5B9A064 214 aa14.95□□□□□ -0.02
CCDC88B-204ENST00000463837 RUSC1-AS1Q66K80 236 aa14.95□□□□□ -0.02
CCDC88B-204ENST00000463837 FAM215AQ9Y5M1 114 aa14.95□□□□□ -0.02
CCDC88B-204ENST00000463837 IGHV3-16A0A0C4DH30 117 aa14.95□□□□□ -0.02
CCDC88B-204ENST00000463837 TRBV6-1A0A0K0K1D8 114 aa14.95□□□□□ -0.02
CCDC88B-204ENST00000463837 DYNAPQ8N1N2 210 aa14.95□□□□□ -0.02
CCDC88B-204ENST00000463837 Q96MF0 132 aa14.95□□□□□ -0.02
CCDC88B-204ENST00000463837 ZNF106Q9H2Y7 1883 aaKnown RBP14.95□□□□□ -0.02
CCDC88B-204ENST00000463837 KIAA1671Q9BY89 1806 aa14.94□□□□□ -0.02
CCDC88B-204ENST00000463837 AGPAT4-IT1Q9H0P7 198 aa14.94□□□□□ -0.02
CCDC88B-204ENST00000463837 I3L2K1 104 aa14.94□□□□□ -0.02
CCDC88B-204ENST00000463837 IGHG4P01861 327 aa14.94□□□□□ -0.02
CCDC88B-204ENST00000463837 CFC1BP0CG36 223 aa14.94□□□□□ -0.02
CCDC88B-204ENST00000463837 CFC1P0CG37 223 aa14.94□□□□□ -0.02
CCDC88B-204ENST00000463837 ANKRD39Q53RE8 183 aa14.94□□□□□ -0.02
CCDC88B-204ENST00000463837 CR1LQ2VPA4 569 aa14.93□□□□□ -0.02
CCDC88B-204ENST00000463837 FOXI2Q6ZQN5 318 aa14.93□□□□□ -0.02
CCDC88B-204ENST00000463837 CFHR4Q92496 578 aa14.93□□□□□ -0.02
CCDC88B-204ENST00000463837 TAX1BP3O14907 124 aa14.93□□□□□ -0.02
CCDC88B-204ENST00000463837 PSCAO43653 123 aa14.93□□□□□ -0.02
CCDC88B-204ENST00000463837 CARD19Q96LW7 228 aa14.93□□□□□ -0.02
CCDC88B-204ENST00000463837 IGHV7-4-1A0A0J9YVY3 117 aa14.93□□□□□ -0.02
CCDC88B-204ENST00000463837 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP14.92□□□□□ -0.023e-6■■□□□ 11.5
CCDC88B-204ENST00000463837 PIP4P1Q86T03 277 aa14.92□□□□□ -0.02
CCDC88B-204ENST00000463837 TRAV12-2A0A075B6T6 113 aa14.92□□□□□ -0.02
CCDC88B-204ENST00000463837 TEX48A0A1B0GUV7 120 aa14.92□□□□□ -0.02
CCDC88B-204ENST00000463837 HERVK_113P63121 156 aa14.92□□□□□ -0.02
CCDC88B-204ENST00000463837 KMT2EQ8IZD2 1858 aa14.92□□□□□ -0.02
CCDC88B-204ENST00000463837 NOTCH4Q99466 2003 aa14.92□□□□□ -0.02
CCDC88B-204ENST00000463837 PCNX1Q96RV3 2341 aa14.92□□□□□ -0.02
CCDC88B-204ENST00000463837 TRAV13-2A0A0B4J235 113 aa14.92□□□□□ -0.02
CCDC88B-204ENST00000463837 SH2D6Q7Z4S9 175 aa14.92□□□□□ -0.02
CCDC88B-204ENST00000463837 NTN5Q8WTR8 489 aaPredicted RBP14.92□□□□□ -0.02
CCDC88B-204ENST00000463837 IGHV3-38A0A0C4DH36 116 aa14.91□□□□□ -0.02
CCDC88B-204ENST00000463837 GAGE12JA6NER3 117 aa14.91□□□□□ -0.02
CCDC88B-204ENST00000463837 GAGE4Q13068 117 aa14.91□□□□□ -0.02
CCDC88B-204ENST00000463837 GAGE5Q13069 117 aa14.91□□□□□ -0.02
CCDC88B-204ENST00000463837 NPBQ8NG41 125 aa14.91□□□□□ -0.02
CCDC88B-204ENST00000463837 GTSF1Q8WW33 167 aa14.91□□□□□ -0.02
CCDC88B-204ENST00000463837 LINC01619G3V211 115 aa14.91□□□□□ -0.02
CCDC88B-204ENST00000463837 GATA1P15976 413 aaPredicted RBP14.91□□□□□ -0.02
CCDC88B-204ENST00000463837 PFN2P35080 140 aa14.91□□□□□ -0.02
CCDC88B-204ENST00000463837 IGFBPL1Q8WX77 278 aa14.9□□□□□ -0.02
CCDC88B-204ENST00000463837 CTSZQ9UBR2 303 aa14.9□□□□□ -0.02
CCDC88B-204ENST00000463837 P0C879 139 aa14.9□□□□□ -0.02
CCDC88B-204ENST00000463837 XCL2Q9UBD3 114 aa14.9□□□□□ -0.02
CCDC88B-204ENST00000463837 GAGE7O76087 117 aa14.89□□□□□ -0.03
CCDC88B-204ENST00000463837 GAGE12FP0CL80 117 aa14.89□□□□□ -0.03
CCDC88B-204ENST00000463837 GAGE12GP0CL81 117 aa14.89□□□□□ -0.03
CCDC88B-204ENST00000463837 GAGE12IP0CL82 117 aa14.89□□□□□ -0.03
CCDC88B-204ENST00000463837 MED13LQ71F56 2210 aa14.89□□□□□ -0.03
CCDC88B-204ENST00000463837 TRAV12-1A0A0B4J245 112 aa14.89□□□□□ -0.03
CCDC88B-204ENST00000463837 C22orf46C9J442 243 aa14.89□□□□□ -0.03
CCDC88B-204ENST00000463837 IGKV1-17P01599 117 aa14.89□□□□□ -0.03
CCDC88B-204ENST00000463837 DEFB130BP0DP73 79 aa14.89□□□□□ -0.03
CCDC88B-204ENST00000463837 DEFB130AP0DP74 79 aa14.89□□□□□ -0.03
CCDC88B-204ENST00000463837 K7EIM0 57 aa14.89□□□□□ -0.03
CCDC88B-204ENST00000463837 PRSS47A8MTI9 375 aa14.88□□□□□ -0.03
CCDC88B-204ENST00000463837 ACYP1P07311 99 aa14.88□□□□□ -0.03
CCDC88B-204ENST00000463837 DENND4AQ7Z401 1863 aa14.88□□□□□ -0.03
CCDC88B-204ENST00000463837 C15orf53Q8NAA6 179 aa14.88□□□□□ -0.03
CCDC88B-204ENST00000463837 PRSS33Q8NF86 280 aa14.88□□□□□ -0.03
CCDC88B-204ENST00000463837 TMEM243Q9BU79 118 aa14.88□□□□□ -0.03
CCDC88B-204ENST00000463837 RNASE13Q5GAN3 156 aaKnown RBP14.87□□□□□ -0.03
CCDC88B-204ENST00000463837 ANKRD29Q8N6D5 301 aa14.87□□□□□ -0.03
CCDC88B-204ENST00000463837 CHD3Q12873 2000 aaKnown RBP14.86□□□□□ -0.03
CCDC88B-204ENST00000463837 FRMD6-AS1P0C7T7 363 aa14.86□□□□□ -0.03
CCDC88B-204ENST00000463837 UBL5Q9BZL1 73 aa14.86□□□□□ -0.03
CCDC88B-204ENST00000463837 IGLV11-55A0A075B6I3 123 aa14.86□□□□□ -0.03
CCDC88B-204ENST00000463837 ZNRF2Q8NHG8 242 aa14.86□□□□□ -0.03
CCDC88B-204ENST00000463837 YPEL4Q96NS1 127 aa14.86□□□□□ -0.03
CCDC88B-204ENST00000463837 CFHR3Q02985 330 aa14.86□□□□□ -0.03
CCDC88B-204ENST00000463837 MAPK1IP1LQ8NDC0 245 aa14.86□□□□□ -0.03
CCDC88B-204ENST00000463837 GAGE6Q13070 117 aa14.86□□□□□ -0.03
CCDC88B-204ENST00000463837 FOXE3Q13461 319 aa14.86□□□□□ -0.03
CCDC88B-204ENST00000463837 IGFL2Q6UWQ7 119 aa14.86□□□□□ -0.03
CCDC88B-204ENST00000463837 SPATA12Q7Z6I5 190 aa14.86□□□□□ -0.03
CCDC88B-204ENST00000463837 MALRD1Q5VYJ5 2156 aa14.85□□□□□ -0.03
CCDC88B-204ENST00000463837 CTRLP40313 264 aa14.85□□□□□ -0.03
CCDC88B-204ENST00000463837 WI2-2373I1.2A0A1W2PRP0 233 aa14.85□□□□□ -0.03
CCDC88B-204ENST00000463837 B5MCH6 92 aa14.85□□□□□ -0.03
CCDC88B-204ENST00000463837 SPRY2O43597 315 aa14.85□□□□□ -0.03
CCDC88B-204ENST00000463837 ODF3L1Q8IXM7 274 aa14.85□□□□□ -0.03
CCDC88B-204ENST00000463837 C19orf71A6NCJ1 209 aa14.84□□□□□ -0.03
CCDC88B-204ENST00000463837 GNRH2O43555 120 aa14.84□□□□□ -0.03
CCDC88B-204ENST00000463837 IGKV1OR2-108A0A075B7D4 117 aa14.83□□□□□ -0.03
CCDC88B-204ENST00000463837 HOXB4P17483 251 aaPredicted RBP14.83□□□□□ -0.04
CCDC88B-204ENST00000463837 IGLV2-23P01705 113 aa14.83□□□□□ -0.04
CCDC88B-204ENST00000463837 C2orf70A6NJV1 201 aa14.82□□□□□ -0.04
CCDC88B-204ENST00000463837 TRACP01848 142 aa14.82□□□□□ -0.04
CCDC88B-204ENST00000463837 MSRB1Q9NZV6 116 aa14.82□□□□□ -0.04
CCDC88B-204ENST00000463837 A0A1B0GXF2 115 aa14.82□□□□□ -0.04
CCDC88B-204ENST00000463837 F6UB75 175 aa14.82□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 131 ms