RNA–Protein interactions for RNA: ENST00000462475.1

COL7A1-204, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 305 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-204ENST00000462475 TXNDC17Q9BRA2 123 aa10.86□□□□□ -0.67
COL7A1-204ENST00000462475 RPH3ALQ9UNE2 315 aa10.86□□□□□ -0.67
COL7A1-204ENST00000462475 IGHV3-16A0A0C4DH30 117 aa10.85□□□□□ -0.67
COL7A1-204ENST00000462475 GNRH2O43555 120 aa10.85□□□□□ -0.67
COL7A1-204ENST00000462475 OR4C5Q8NGB2 326 aa10.85□□□□□ -0.67
COL7A1-204ENST00000462475 TMED6Q8WW62 240 aa10.85□□□□□ -0.67
COL7A1-204ENST00000462475 SMIM3Q9BZL3 60 aa10.85□□□□□ -0.67
COL7A1-204ENST00000462475 HSPB11Q9Y547 144 aa10.85□□□□□ -0.67
COL7A1-204ENST00000462475 DNAH8Q96JB1 4490 aa10.85□□□□□ -0.67
COL7A1-204ENST00000462475 F6UZH7 168 aa10.84□□□□□ -0.67
COL7A1-204ENST00000462475 M0R2P5 195 aa10.84□□□□□ -0.67
COL7A1-204ENST00000462475 TAS2R45P59539 299 aa10.84□□□□□ -0.67
COL7A1-204ENST00000462475 CYCSP99999 105 aaKnown RBP10.84□□□□□ -0.67
COL7A1-204ENST00000462475 FRZBQ92765 325 aa10.84□□□□□ -0.67
COL7A1-204ENST00000462475 TVP23CQ96ET8 276 aa10.84□□□□□ -0.67
COL7A1-204ENST00000462475 OTORQ9NRC9 128 aa10.84□□□□□ -0.67
COL7A1-204ENST00000462475 TRAV8-1A0A0A6YYK1 113 aa10.83□□□□□ -0.68
COL7A1-204ENST00000462475 PGPA6NDG6 321 aa10.83□□□□□ -0.68
COL7A1-204ENST00000462475 TYMSP04818 313 aa10.83□□□□□ -0.68
COL7A1-204ENST00000462475 GCSHP23434 173 aa10.83□□□□□ -0.68
COL7A1-204ENST00000462475 HAMPP81172 84 aa10.83□□□□□ -0.68
COL7A1-204ENST00000462475 GOLT1AQ6ZVE7 132 aa10.83□□□□□ -0.68
COL7A1-204ENST00000462475 C10orf126Q8N4M7 172 aa10.83□□□□□ -0.68
COL7A1-204ENST00000462475 CMTM2Q8TAZ6 248 aa10.83□□□□□ -0.68
COL7A1-204ENST00000462475 MED28Q9H204 178 aa10.83□□□□□ -0.68
COL7A1-204ENST00000462475 TRAV21A0A0B4J279 112 aa10.82□□□□□ -0.68
COL7A1-204ENST00000462475 MPC2O95563 127 aa10.82□□□□□ -0.68
COL7A1-204ENST00000462475 SMR3BP02814 79 aaPredicted RBP10.82□□□□□ -0.68
COL7A1-204ENST00000462475 NHLRC2Q8NBF2 726 aa10.82□□□□□ -0.68
COL7A1-204ENST00000462475 SCGB1C1Q8TD33 95 aa10.82□□□□□ -0.68
COL7A1-204ENST00000462475 MBD2Q9UBB5 411 aa10.82□□□□□ -0.68
COL7A1-204ENST00000462475 SRRM2Q9UQ35 2752 aaKnown RBP10.82□□□□□ -0.68
COL7A1-204ENST00000462475 GATA1P15976 413 aaPredicted RBP10.81□□□□□ -0.68
COL7A1-204ENST00000462475 PPT1P50897 306 aa10.81□□□□□ -0.68
COL7A1-204ENST00000462475 GNG5P63218 68 aa10.81□□□□□ -0.68
COL7A1-204ENST00000462475 WFDC1Q9HC57 220 aa10.81□□□□□ -0.68
COL7A1-204ENST00000462475 SDF2L1Q9HCN8 221 aa10.81□□□□□ -0.68
COL7A1-204ENST00000462475 TREM1Q9NP99 234 aa10.81□□□□□ -0.68
COL7A1-204ENST00000462475 IGHV3-38A0A0C4DH36 116 aa10.8□□□□□ -0.68
COL7A1-204ENST00000462475 LRCOL1A6NCL2 159 aa10.8□□□□□ -0.68
COL7A1-204ENST00000462475 SSNA1O43805 119 aa10.8□□□□□ -0.68
COL7A1-204ENST00000462475 RPL12P30050 165 aaKnown RBP10.8□□□□□ -0.68
COL7A1-204ENST00000462475 TIRAPP58753 221 aa10.8□□□□□ -0.68
COL7A1-204ENST00000462475 RAB2AP61019 212 aa10.8□□□□□ -0.68
COL7A1-204ENST00000462475 FAM74A1Q5RGS3 127 aa10.8□□□□□ -0.68
COL7A1-204ENST00000462475 IGLV5-52A0A0A0MRZ9 124 aa10.79□□□□□ -0.68
COL7A1-204ENST00000462475 HMGB3O15347 200 aaKnown RBP10.79□□□□□ -0.68
COL7A1-204ENST00000462475 PSCAO43653 123 aa10.79□□□□□ -0.68
COL7A1-204ENST00000462475 PET100P0DJ07 73 aa10.79□□□□□ -0.68
COL7A1-204ENST00000462475 ACOT6Q3I5F7 207 aaPredicted RBP10.79□□□□□ -0.68
COL7A1-204ENST00000462475 LINC01556Q5JQF7 62 aa10.79□□□□□ -0.68
COL7A1-204ENST00000462475 PQLC2Q6ZP29 291 aa10.79□□□□□ -0.68
COL7A1-204ENST00000462475 SH2D6Q7Z4S9 175 aa10.79□□□□□ -0.68
COL7A1-204ENST00000462475 SGK494Q96LW2 274 aa10.79□□□□□ -0.68
COL7A1-204ENST00000462475 FLG2Q5D862 2391 aaPredicted RBP10.79□□□□□ -0.68
COL7A1-204ENST00000462475 FBLL1A6NHQ2 334 aaKnown RBP10.78□□□□□ -0.68
COL7A1-204ENST00000462475 DPPA3Q6W0C5 159 aa10.78□□□□□ -0.68
COL7A1-204ENST00000462475 ARL6IP6Q8N6S5 226 aa10.78□□□□□ -0.68
COL7A1-204ENST00000462475 SLC25A29Q8N8R3 303 aa10.78□□□□□ -0.68
COL7A1-204ENST00000462475 ASB13Q8WXK3 278 aa10.78□□□□□ -0.68
COL7A1-204ENST00000462475 KCNS1Q96KK3 526 aa10.78□□□□□ -0.68
COL7A1-204ENST00000462475 C11orf21Q9P2W6 132 aa10.78□□□□□ -0.68
COL7A1-204ENST00000462475 A0A1W2PPV4 95 aa10.77□□□□□ -0.69
COL7A1-204ENST00000462475 IBA57-AS1B1ANH7 110 aa10.77□□□□□ -0.69
COL7A1-204ENST00000462475 ZNF80P51504 273 aaPredicted RBP10.77□□□□□ -0.69
COL7A1-204ENST00000462475 CFAP126Q5VTH2 177 aa10.77□□□□□ -0.69
COL7A1-204ENST00000462475 TCTE3Q8IZS6 198 aa10.77□□□□□ -0.69
COL7A1-204ENST00000462475 Q9HAA7 133 aa10.77□□□□□ -0.69
COL7A1-204ENST00000462475 IGHV3-73A0A0B4J1V6 119 aa10.76□□□□□ -0.69
COL7A1-204ENST00000462475 RS1O15537 224 aa10.76□□□□□ -0.69
COL7A1-204ENST00000462475 ARL14EPLP0DKL9 152 aa10.76□□□□□ -0.69
COL7A1-204ENST00000462475 ZNF876PQ49A33 203 aa10.76□□□□□ -0.69
COL7A1-204ENST00000462475 OR10J3Q5JRS4 329 aa10.76□□□□□ -0.69
COL7A1-204ENST00000462475 Q8N814 137 aa10.76□□□□□ -0.69
COL7A1-204ENST00000462475 NTN5Q8WTR8 489 aaPredicted RBP10.76□□□□□ -0.69
COL7A1-204ENST00000462475 TRAV8-6A0A0B4J262 113 aa10.75□□□□□ -0.69
COL7A1-204ENST00000462475 IGHV3-30P01768 117 aa10.75□□□□□ -0.69
COL7A1-204ENST00000462475 IGHV3-33P01772 117 aa10.75□□□□□ -0.69
COL7A1-204ENST00000462475 PFN1P07737 140 aaKnown RBP10.75□□□□□ -0.69
COL7A1-204ENST00000462475 IGHV3-30-3P0DP02 117 aa10.75□□□□□ -0.69
COL7A1-204ENST00000462475 IGHV3-30-5P0DP03 117 aa10.75□□□□□ -0.69
COL7A1-204ENST00000462475 RHOHQ15669 191 aa10.75□□□□□ -0.69
COL7A1-204ENST00000462475 TMEM75Q8N9X5 138 aa10.75□□□□□ -0.69
COL7A1-204ENST00000462475 OR10G9Q8NGN4 311 aa10.75□□□□□ -0.69
COL7A1-204ENST00000462475 OR10G7Q8NGN6 311 aa10.75□□□□□ -0.69
COL7A1-204ENST00000462475 TMEM70Q9BUB7 260 aa10.75□□□□□ -0.69
COL7A1-204ENST00000462475 TRBV6-4A0A1B0GX49 114 aa10.74□□□□□ -0.69
COL7A1-204ENST00000462475 ZFP69Q49AA0 526 aa10.74□□□□□ -0.69
COL7A1-204ENST00000462475 C9orf85Q96MD7 179 aa10.74□□□□□ -0.69
COL7A1-204ENST00000462475 PRADC1Q9BSG0 188 aa10.74□□□□□ -0.69
COL7A1-204ENST00000462475 NDFIP1Q9BT67 221 aa10.74□□□□□ -0.69
COL7A1-204ENST00000462475 FAM229AH3BQW9 127 aa10.73□□□□□ -0.69
COL7A1-204ENST00000462475 GCGP01275 180 aa10.73□□□□□ -0.69
COL7A1-204ENST00000462475 TCRAP04437 139 aa10.73□□□□□ -0.69
COL7A1-204ENST00000462475 CDC34P49427 236 aaPredicted RBP10.73□□□□□ -0.69
COL7A1-204ENST00000462475 ZNF506Q5JVG8 444 aa10.73□□□□□ -0.69
COL7A1-204ENST00000462475 LELP1Q5T871 98 aa10.73□□□□□ -0.69
COL7A1-204ENST00000462475 Q6ZSN1 163 aa10.73□□□□□ -0.69
COL7A1-204ENST00000462475 Q8N3U1 123 aa10.73□□□□□ -0.69
COL7A1-204ENST00000462475 C5orf17Q8NAS9 161 aa10.73□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms