RNA–Protein interactions for RNA: ENST00000459756.5

COL7A1-203, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 818 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-203ENST00000459756 MDFICQ9P1T7 246 aa11.21□□□□□ -0.61
COL7A1-203ENST00000459756 DNAH17Q9UFH2 4485 aa11.21□□□□□ -0.62
COL7A1-203ENST00000459756 MUC4Q99102 2169 aa11.21□□□□□ -0.62
COL7A1-203ENST00000459756 TRAV21A0A0B4J279 112 aa11.2□□□□□ -0.62
COL7A1-203ENST00000459756 PRSS29PA6NIE9 313 aa11.2□□□□□ -0.62
COL7A1-203ENST00000459756 TMEM183BQ1AE95 376 aa11.2□□□□□ -0.62
COL7A1-203ENST00000459756 C1orf134Q5TEV5 83 aa11.2□□□□□ -0.62
COL7A1-203ENST00000459756 TMEM183AQ8IXX5 376 aa11.2□□□□□ -0.62
COL7A1-203ENST00000459756 TVP23CQ96ET8 276 aa11.2□□□□□ -0.62
COL7A1-203ENST00000459756 VSIG2Q96IQ7 327 aa11.2□□□□□ -0.62
COL7A1-203ENST00000459756 SPXQ9BT56 116 aa11.2□□□□□ -0.62
COL7A1-203ENST00000459756 NDFIP1Q9BT67 221 aa11.2□□□□□ -0.62
COL7A1-203ENST00000459756 NAGKQ9UJ70 344 aa11.2□□□□□ -0.62
COL7A1-203ENST00000459756 NBDYA0A0U1RRE5 68 aa11.19□□□□□ -0.62
COL7A1-203ENST00000459756 A0A1W2PRE2 83 aa11.19□□□□□ -0.62
COL7A1-203ENST00000459756 H2AFB1P0C5Y9 115 aa11.19□□□□□ -0.62
COL7A1-203ENST00000459756 SUMO1P63165 101 aaKnown RBP11.19□□□□□ -0.62
COL7A1-203ENST00000459756 DPPA3Q6W0C5 159 aa11.19□□□□□ -0.62
COL7A1-203ENST00000459756 EPDR1Q9UM22 224 aa11.19□□□□□ -0.62
COL7A1-203ENST00000459756 FBLL1A6NHQ2 334 aaKnown RBP11.18□□□□□ -0.62
COL7A1-203ENST00000459756 GGTLC3B5MD39 225 aa11.18□□□□□ -0.62
COL7A1-203ENST00000459756 F6UZH7 168 aa11.18□□□□□ -0.62
COL7A1-203ENST00000459756 SLAQ13239 276 aa11.18□□□□□ -0.62
COL7A1-203ENST00000459756 ALKAL2Q6UX46 152 aa11.18□□□□□ -0.62
COL7A1-203ENST00000459756 RASL10AQ92737 203 aa11.18□□□□□ -0.62
COL7A1-203ENST00000459756 A0A1B0GVY2 172 aa11.17□□□□□ -0.62
COL7A1-203ENST00000459756 IGHV3-53P01767 116 aa11.17□□□□□ -0.62
COL7A1-203ENST00000459756 SULT1A2P50226 295 aa11.17□□□□□ -0.62
COL7A1-203ENST00000459756 ESRGQ1W209 222 aa11.17□□□□□ -0.62
COL7A1-203ENST00000459756 CYB561D1Q8N8Q1 229 aa11.17□□□□□ -0.62
COL7A1-203ENST00000459756 KCNS1Q96KK3 526 aa11.17□□□□□ -0.62
COL7A1-203ENST00000459756 SGK494Q96LW2 274 aa11.17□□□□□ -0.62
COL7A1-203ENST00000459756 PRO0255Q9UI72 69 aa11.17□□□□□ -0.62
COL7A1-203ENST00000459756 PSG8Q9UQ74 426 aa11.17□□□□□ -0.62
COL7A1-203ENST00000459756 A0A096LPF7 62 aa11.16□□□□□ -0.62
COL7A1-203ENST00000459756 IGHV3-16A0A0C4DH30 117 aa11.16□□□□□ -0.62
COL7A1-203ENST00000459756 PAX4O43316 350 aa11.16□□□□□ -0.62
COL7A1-203ENST00000459756 IFNA7P01567 189 aa11.16□□□□□ -0.62
COL7A1-203ENST00000459756 IGLV2-11P01706 119 aa11.16□□□□□ -0.62
COL7A1-203ENST00000459756 FLI1Q01543 452 aaPredicted RBP11.16□□□□□ -0.62
COL7A1-203ENST00000459756 CST9LP1Q5W188 147 aa11.16□□□□□ -0.62
COL7A1-203ENST00000459756 TMEM75Q8N9X5 138 aa11.16□□□□□ -0.62
COL7A1-203ENST00000459756 MBD3L1Q8WWY6 194 aa11.16□□□□□ -0.62
COL7A1-203ENST00000459756 UPK3BQ9BT76 320 aa11.16□□□□□ -0.62
COL7A1-203ENST00000459756 Q9H8V8 135 aa11.16□□□□□ -0.62
COL7A1-203ENST00000459756 SDF2L1Q9HCN8 221 aa11.16□□□□□ -0.62
COL7A1-203ENST00000459756 HHLA3Q9XRX5 114 aa11.16□□□□□ -0.62
COL7A1-203ENST00000459756 MRPS16Q9Y3D3 137 aaKnown RBP11.16□□□□□ -0.62
COL7A1-203ENST00000459756 PKHD1P08F94 4074 aa11.15□□□□□ -0.62
COL7A1-203ENST00000459756 FAM74A7A6NL05 159 aa11.15□□□□□ -0.62
COL7A1-203ENST00000459756 GNRH2O43555 120 aa11.15□□□□□ -0.62
COL7A1-203ENST00000459756 RAB5CP51148 216 aa11.15□□□□□ -0.62
COL7A1-203ENST00000459756 FHL2Q14192 279 aa11.15□□□□□ -0.62
COL7A1-203ENST00000459756 SAPCD1Q5SSQ6 148 aa11.15□□□□□ -0.62
COL7A1-203ENST00000459756 NKX6-2Q9C056 277 aaPredicted RBP11.15□□□□□ -0.62
COL7A1-203ENST00000459756 ICOSQ9Y6W8 199 aa11.15□□□□□ -0.62
COL7A1-203ENST00000459756 TRGV4A0A0C4DH28 118 aa11.14□□□□□ -0.63
COL7A1-203ENST00000459756 M0R2P5 195 aa11.14□□□□□ -0.63
COL7A1-203ENST00000459756 PAGE4O60829 102 aa11.14□□□□□ -0.63
COL7A1-203ENST00000459756 TYMSP04818 313 aa11.14□□□□□ -0.63
COL7A1-203ENST00000459756 CRYBA4P53673 196 aa11.14□□□□□ -0.63
COL7A1-203ENST00000459756 PRNTQ86SH4 94 aa11.14□□□□□ -0.63
COL7A1-203ENST00000459756 C8orf49Q96NF6 230 aa11.14□□□□□ -0.63
COL7A1-203ENST00000459756 PKD1P98161 4303 aa11.13□□□□□ -0.63
COL7A1-203ENST00000459756 GCGP01275 180 aa11.13□□□□□ -0.63
COL7A1-203ENST00000459756 PFN1P07737 140 aaKnown RBP11.13□□□□□ -0.63
COL7A1-203ENST00000459756 ZNF80P51504 273 aaPredicted RBP11.13□□□□□ -0.63
COL7A1-203ENST00000459756 SMUG1Q53HV7 270 aa11.13□□□□□ -0.63
COL7A1-203ENST00000459756 TTC32Q5I0X7 151 aa11.13□□□□□ -0.63
COL7A1-203ENST00000459756 C6orf223Q8N319 242 aa11.13□□□□□ -0.63
COL7A1-203ENST00000459756 GNG13Q9P2W3 67 aa11.13□□□□□ -0.63
COL7A1-203ENST00000459756 TRAV4A0A0B4J268 109 aa11.12□□□□□ -0.63
COL7A1-203ENST00000459756 TEX46H3BTG2 121 aa11.12□□□□□ -0.63
COL7A1-203ENST00000459756 SFTA3P0C7M3 94 aa11.12□□□□□ -0.63
COL7A1-203ENST00000459756 PPT1P50897 306 aa11.12□□□□□ -0.63
COL7A1-203ENST00000459756 CCL20P78556 96 aa11.12□□□□□ -0.63
COL7A1-203ENST00000459756 MRPL23Q16540 153 aaKnown RBP11.12□□□□□ -0.63
COL7A1-203ENST00000459756 ZNF479Q96JC4 524 aa11.12□□□□□ -0.63
COL7A1-203ENST00000459756 A0A1W2PPQ1 181 aa11.11□□□□□ -0.63
COL7A1-203ENST00000459756 PEX7O00628 323 aa11.11□□□□□ -0.63
COL7A1-203ENST00000459756 OR4C5Q8NGB2 326 aa11.11□□□□□ -0.63
COL7A1-203ENST00000459756 HIST1H2BAQ96A08 127 aa11.11□□□□□ -0.63
COL7A1-203ENST00000459756 LINC00479Q96M42 142 aa11.11□□□□□ -0.63
COL7A1-203ENST00000459756 C11orf21Q9P2W6 132 aa11.11□□□□□ -0.63
COL7A1-203ENST00000459756 TRAV34A0A0B4J273 112 aa11.1□□□□□ -0.63
COL7A1-203ENST00000459756 ARL2-SNX15V9GYD0 113 aa11.1□□□□□ -0.63
COL7A1-203ENST00000459756 ORM1P02763 201 aa11.09□□□□□ -0.63
COL7A1-203ENST00000459756 NEGR1Q7Z3B1 354 aa11.09□□□□□ -0.63
COL7A1-203ENST00000459756 PCNPQ8WW12 178 aaKnown RBP11.09□□□□□ -0.63
COL7A1-203ENST00000459756 TCEAL7Q9BRU2 100 aa11.09□□□□□ -0.63
COL7A1-203ENST00000459756 C9JCJ5 164 aa11.08□□□□□ -0.64
COL7A1-203ENST00000459756 K7EQD1 137 aa11.08□□□□□ -0.64
COL7A1-203ENST00000459756 BTF3P20290 206 aaKnown RBP11.08□□□□□ -0.64
COL7A1-203ENST00000459756 SRIP30626 198 aa11.08□□□□□ -0.64
COL7A1-203ENST00000459756 AKR1C3P42330 323 aa11.08□□□□□ -0.64
COL7A1-203ENST00000459756 UBE2G1P62253 170 aa11.08□□□□□ -0.64
COL7A1-203ENST00000459756 ZNF876PQ49A33 203 aa11.08□□□□□ -0.64
COL7A1-203ENST00000459756 Q86TA4 180 aa11.08□□□□□ -0.64
COL7A1-203ENST00000459756 C9orf85Q96MD7 179 aa11.08□□□□□ -0.64
COL7A1-203ENST00000459756 KRTAP1-5Q9BYS1 174 aa11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 99.5 ms