RNA–Protein interactions for RNA: ENST00000458268.5

USP39-209, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 751 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-209ENST00000458268 Q6ZNX1 250 aa13.06□□□□□ -0.32
USP39-209ENST00000458268 UMAD1C9J7I0 102 aa13.05□□□□□ -0.32
USP39-209ENST00000458268 SFTA3P0C7M3 94 aa13.05□□□□□ -0.32
USP39-209ENST00000458268 CCL18P55774 89 aa13.05□□□□□ -0.32
USP39-209ENST00000458268 UBE2G1P62253 170 aa13.05□□□□□ -0.32
USP39-209ENST00000458268 RNF212Q495C1 297 aa13.05□□□□□ -0.32
USP39-209ENST00000458268 ARL2-SNX15V9GYD0 113 aa13.05□□□□□ -0.32
USP39-209ENST00000458268 MUC4Q99102 2169 aa13.04□□□□□ -0.32
USP39-209ENST00000458268 VPS13DQ5THJ4 4388 aa13.04□□□□□ -0.32
USP39-209ENST00000458268 PAGE4O60829 102 aa13.04□□□□□ -0.32
USP39-209ENST00000458268 Q86TA4 180 aa13.04□□□□□ -0.32
USP39-209ENST00000458268 KCNS1Q96KK3 526 aa13.04□□□□□ -0.32
USP39-209ENST00000458268 SPXQ9BT56 116 aa13.04□□□□□ -0.32
USP39-209ENST00000458268 TRGV4A0A0C4DH28 118 aa13.03□□□□□ -0.32
USP39-209ENST00000458268 IGHV3-16A0A0C4DH30 117 aa13.03□□□□□ -0.32
USP39-209ENST00000458268 C9JCJ5 164 aa13.03□□□□□ -0.32
USP39-209ENST00000458268 H2AFB1P0C5Y9 115 aa13.03□□□□□ -0.32
USP39-209ENST00000458268 LGALS9BQ3B8N2 356 aa13.03□□□□□ -0.32
USP39-209ENST00000458268 SAPCD1Q5SSQ6 148 aa13.03□□□□□ -0.32
USP39-209ENST00000458268 AKAP14Q86UN6 197 aa13.03□□□□□ -0.32
USP39-209ENST00000458268 TCTE3Q8IZS6 198 aa13.03□□□□□ -0.32
USP39-209ENST00000458268 NKX6-2Q9C056 277 aaPredicted RBP13.03□□□□□ -0.32
USP39-209ENST00000458268 C11orf21Q9P2W6 132 aa13.03□□□□□ -0.32
USP39-209ENST00000458268 FBLL1A6NHQ2 334 aaKnown RBP13.02□□□□□ -0.33
USP39-209ENST00000458268 PAX4O43316 350 aa13.02□□□□□ -0.33
USP39-209ENST00000458268 PFN1P07737 140 aaKnown RBP13.02□□□□□ -0.33
USP39-209ENST00000458268 AKR1C3P42330 323 aa13.02□□□□□ -0.33
USP39-209ENST00000458268 LGALSLQ3ZCW2 172 aaPredicted RBP13.02□□□□□ -0.33
USP39-209ENST00000458268 HIST1H2BAQ96A08 127 aa13.02□□□□□ -0.33
USP39-209ENST00000458268 LINC00588Q9Y4M8 146 aa13.02□□□□□ -0.33
USP39-209ENST00000458268 A0A096LPF7 62 aa13.01□□□□□ -0.33
USP39-209ENST00000458268 TDRG1Q3Y452 100 aa13.01□□□□□ -0.33
USP39-209ENST00000458268 VSIG2Q96IQ7 327 aa13.01□□□□□ -0.33
USP39-209ENST00000458268 ZNF479Q96JC4 524 aa13.01□□□□□ -0.33
USP39-209ENST00000458268 M0R2P5 195 aa13□□□□□ -0.33
USP39-209ENST00000458268 C1QBP02746 253 aa13□□□□□ -0.33
USP39-209ENST00000458268 DPPA3Q6W0C5 159 aa13□□□□□ -0.33
USP39-209ENST00000458268 MBD3L1Q8WWY6 194 aa13□□□□□ -0.33
USP39-209ENST00000458268 ORM1P02763 201 aa12.99□□□□□ -0.33
USP39-209ENST00000458268 NHLRC2Q8NBF2 726 aa12.99□□□□□ -0.33
USP39-209ENST00000458268 OR4C5Q8NGB2 326 aa12.99□□□□□ -0.33
USP39-209ENST00000458268 C18orf15Q96N68 181 aa12.99□□□□□ -0.33
USP39-209ENST00000458268 ICOSQ9Y6W8 199 aa12.99□□□□□ -0.33
USP39-209ENST00000458268 EPPK1P58107 5090 aaKnown RBP12.99□□□□□ -0.33
USP39-209ENST00000458268 M0R036 132 aa12.98□□□□□ -0.33
USP39-209ENST00000458268 S100A4P26447 101 aaKnown RBP12.98□□□□□ -0.33
USP39-209ENST00000458268 FHL2Q14192 279 aa12.98□□□□□ -0.33
USP39-209ENST00000458268 EIF5AL1Q6IS14 154 aaKnown RBP12.98□□□□□ -0.33
USP39-209ENST00000458268 ZC2HC1AQ96GY0 325 aa12.98□□□□□ -0.33
USP39-209ENST00000458268 FMC1Q96HJ9 113 aa12.98□□□□□ -0.33
USP39-209ENST00000458268 GNG13Q9P2W3 67 aa12.98□□□□□ -0.33
USP39-209ENST00000458268 PRO0255Q9UI72 69 aa12.98□□□□□ -0.33
USP39-209ENST00000458268 HHLA3Q9XRX5 114 aa12.98□□□□□ -0.33
USP39-209ENST00000458268 DNAH6Q9C0G6 4158 aa12.97□□□□□ -0.33
USP39-209ENST00000458268 SCO2A0A1W2PP80 73 aa12.97□□□□□ -0.33
USP39-209ENST00000458268 ESRGQ1W209 222 aa12.97□□□□□ -0.33
USP39-209ENST00000458268 RASL10AQ92737 203 aa12.97□□□□□ -0.33
USP39-209ENST00000458268 TMSB15BA0A087X1C1 80 aa12.96□□□□□ -0.33
USP39-209ENST00000458268 IGHV3-73A0A0B4J1V6 119 aa12.96□□□□□ -0.33
USP39-209ENST00000458268 TRAV4A0A0B4J268 109 aa12.96□□□□□ -0.33
USP39-209ENST00000458268 FABP5P3A8MUU1 101 aa12.96□□□□□ -0.33
USP39-209ENST00000458268 H3BNG1 76 aa12.96□□□□□ -0.33
USP39-209ENST00000458268 CRYBA4P53673 196 aa12.96□□□□□ -0.33
USP39-209ENST00000458268 FAM3BP58499 235 aaPredicted RBP12.96□□□□□ -0.33
USP39-209ENST00000458268 ZNF876PQ49A33 203 aa12.96□□□□□ -0.33
USP39-209ENST00000458268 ZNRF2Q8NHG8 242 aa12.96□□□□□ -0.33
USP39-209ENST00000458268 PCNPQ8WW12 178 aaKnown RBP12.96□□□□□ -0.33
USP39-209ENST00000458268 B4DEV8 164 aa12.95□□□□□ -0.34
USP39-209ENST00000458268 SH2D1AO60880 128 aa12.95□□□□□ -0.34
USP39-209ENST00000458268 ASIPP42127 132 aa12.95□□□□□ -0.34
USP39-209ENST00000458268 CCL20P78556 96 aa12.95□□□□□ -0.34
USP39-209ENST00000458268 SLAQ13239 276 aa12.95□□□□□ -0.34
USP39-209ENST00000458268 GRIFINA4D1Z8 144 aa12.94□□□□□ -0.34
USP39-209ENST00000458268 SLC51BQ86UW2 128 aa12.94□□□□□ -0.34
USP39-209ENST00000458268 TCEAL7Q9BRU2 100 aa12.94□□□□□ -0.34
USP39-209ENST00000458268 ZFP30Q9Y2G7 519 aa12.94□□□□□ -0.34
USP39-209ENST00000458268 IGKV3D-20A0A0C4DH25 116 aa12.93□□□□□ -0.34
USP39-209ENST00000458268 NBDYA0A0U1RRE5 68 aa12.93□□□□□ -0.34
USP39-209ENST00000458268 PGPEP1LA6NFU8 196 aa12.93□□□□□ -0.34
USP39-209ENST00000458268 TEX46H3BTG2 121 aa12.93□□□□□ -0.34
USP39-209ENST00000458268 H3BVH4 76 aa12.93□□□□□ -0.34
USP39-209ENST00000458268 GYPEP15421 78 aa12.93□□□□□ -0.34
USP39-209ENST00000458268 FAM162BQ5T6X4 162 aa12.93□□□□□ -0.34
USP39-209ENST00000458268 Q6ZR54 194 aa12.93□□□□□ -0.34
USP39-209ENST00000458268 A0A1B0GVG6 124 aa12.92□□□□□ -0.34
USP39-209ENST00000458268 PRSS29PA6NIE9 313 aa12.92□□□□□ -0.34
USP39-209ENST00000458268 RTL8CO15255 209 aa12.92□□□□□ -0.34
USP39-209ENST00000458268 RNASE3P12724 160 aaKnown RBP12.92□□□□□ -0.34
USP39-209ENST00000458268 SRIP30626 198 aa12.92□□□□□ -0.34
USP39-209ENST00000458268 SULT1A2P50226 295 aa12.92□□□□□ -0.34
USP39-209ENST00000458268 CRIP1P50238 77 aa12.92□□□□□ -0.34
USP39-209ENST00000458268 RAB5CP51148 216 aa12.92□□□□□ -0.34
USP39-209ENST00000458268 MRPL23Q16540 153 aaKnown RBP12.92□□□□□ -0.34
USP39-209ENST00000458268 SOHLH1Q5JUK2 328 aa12.92□□□□□ -0.34
USP39-209ENST00000458268 ZNF506Q5JVG8 444 aa12.92□□□□□ -0.34
USP39-209ENST00000458268 C1orf134Q5TEV5 83 aa12.92□□□□□ -0.34
USP39-209ENST00000458268 PRR27Q6MZM9 219 aa12.92□□□□□ -0.34
USP39-209ENST00000458268 C9orf62Q8N4C0 152 aa12.92□□□□□ -0.34
USP39-209ENST00000458268 C9orf85Q96MD7 179 aa12.92□□□□□ -0.34
USP39-209ENST00000458268 Q9H8V8 135 aa12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms