RNA–Protein interactions for RNA: ENST00000455727.6

LDLR-202, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-202ENST00000455727 UTP20O75691 2785 aaKnown RBP11.39□□□□□ -0.59
LDLR-202ENST00000455727 MED14OSP0DP75 135 aa11.38□□□□□ -0.59
LDLR-202ENST00000455727 TMEM95Q3KNT9 176 aa11.38□□□□□ -0.59
LDLR-202ENST00000455727 UFC1Q9Y3C8 167 aa11.38□□□□□ -0.59
LDLR-202ENST00000455727 ANKRD17O75179 2603 aaKnown RBP11.38□□□□□ -0.59
LDLR-202ENST00000455727 IGLV2-18A0A075B6J9 118 aa11.38□□□□□ -0.59
LDLR-202ENST00000455727 FSHBP01225 129 aa11.38□□□□□ -0.59
LDLR-202ENST00000455727 COX8AP10176 69 aa11.38□□□□□ -0.59
LDLR-202ENST00000455727 ORAOV1Q8WV07 137 aa11.38□□□□□ -0.59
LDLR-202ENST00000455727 BBC3Q96PG8 261 aaPredicted RBP11.38□□□□□ -0.59
LDLR-202ENST00000455727 USP24Q9UPU5 2620 aa11.38□□□□□ -0.59
LDLR-202ENST00000455727 H3BVH4 76 aa11.37□□□□□ -0.59
LDLR-202ENST00000455727 ID1P41134 155 aa11.37□□□□□ -0.59
LDLR-202ENST00000455727 FXYD7P58549 80 aa11.37□□□□□ -0.59
LDLR-202ENST00000455727 SRSF1Q07955 248 aaKnown RBP eCLIP11.37□□□□□ -0.592e-6■■□□□ 14.5
LDLR-202ENST00000455727 NRACQ8N912 160 aa11.37□□□□□ -0.59
LDLR-202ENST00000455727 OR1N2Q8NGR9 330 aa11.37□□□□□ -0.59
LDLR-202ENST00000455727 MRAP2Q96G30 205 aa11.37□□□□□ -0.59
LDLR-202ENST00000455727 GATA1P15976 413 aaPredicted RBP11.37□□□□□ -0.59
LDLR-202ENST00000455727 LEPP41159 167 aa11.36□□□□□ -0.59
LDLR-202ENST00000455727 ZNF843Q8N446 348 aa11.36□□□□□ -0.59
LDLR-202ENST00000455727 DCANP1Q8TF63 244 aa11.36□□□□□ -0.59
LDLR-202ENST00000455727 ASIPP42127 132 aa11.36□□□□□ -0.59
LDLR-202ENST00000455727 DEFB1P60022 68 aa11.36□□□□□ -0.59
LDLR-202ENST00000455727 VPREB3Q9UKI3 123 aa11.36□□□□□ -0.59
LDLR-202ENST00000455727 F6UB75 175 aa11.35□□□□□ -0.59
LDLR-202ENST00000455727 Q6YL49 198 aa11.35□□□□□ -0.59
LDLR-202ENST00000455727 IGKV3-7A0A075B6H7 116 aa11.35□□□□□ -0.59
LDLR-202ENST00000455727 J3KRW8 73 aa11.35□□□□□ -0.59
LDLR-202ENST00000455727 RNASE4P34096 147 aaKnown RBP11.35□□□□□ -0.59
LDLR-202ENST00000455727 ANXA2RQ3ZCQ2 193 aa11.35□□□□□ -0.59
LDLR-202ENST00000455727 PSMG4Q5JS54 123 aa11.35□□□□□ -0.59
LDLR-202ENST00000455727 UBR5O95071 2799 aaPredicted RBP11.34□□□□□ -0.59
LDLR-202ENST00000455727 KLLNB2CW77 178 aa11.34□□□□□ -0.59
LDLR-202ENST00000455727 RNF223E7ERA6 249 aa11.34□□□□□ -0.59
LDLR-202ENST00000455727 IGHV4-31P0DP07 118 aa11.34□□□□□ -0.59
LDLR-202ENST00000455727 S100A4P26447 101 aaKnown RBP11.34□□□□□ -0.59
LDLR-202ENST00000455727 C12orf54Q6X4T0 127 aa11.34□□□□□ -0.59
LDLR-202ENST00000455727 BEX4Q9NWD9 120 aaPredicted RBP11.34□□□□□ -0.59
LDLR-202ENST00000455727 TP73-AS1Q9UF72 201 aa11.34□□□□□ -0.59
LDLR-202ENST00000455727 ZNF462Q96JM2 2506 aa11.34□□□□□ -0.59
LDLR-202ENST00000455727 CR1P17927 2039 aa11.34□□□□□ -0.59
LDLR-202ENST00000455727 MPV17L2Q567V2 206 aa11.34□□□□□ -0.59
LDLR-202ENST00000455727 MYOZ3Q8TDC0 251 aa11.34□□□□□ -0.59
LDLR-202ENST00000455727 COX11Q9Y6N1 276 aa11.34□□□□□ -0.59
LDLR-202ENST00000455727 FBN2P35556 2912 aa11.33□□□□□ -0.6
LDLR-202ENST00000455727 ELANEP08246 267 aa11.33□□□□□ -0.6
LDLR-202ENST00000455727 EDN2P20800 178 aa11.33□□□□□ -0.6
LDLR-202ENST00000455727 LRRC75A-AS1Q8N1F1 130 aa11.33□□□□□ -0.6
LDLR-202ENST00000455727 MAPK1IP1LQ8NDC0 245 aa11.33□□□□□ -0.6
LDLR-202ENST00000455727 TMEM158Q8WZ71 300 aa11.33□□□□□ -0.6
LDLR-202ENST00000455727 PHLDA3Q9Y5J5 127 aa11.33□□□□□ -0.6
LDLR-202ENST00000455727 USP9YO00507 2555 aaPredicted RBP11.33□□□□□ -0.6
LDLR-202ENST00000455727 NUDT3O95989 172 aa11.32□□□□□ -0.6
LDLR-202ENST00000455727 LAGE3Q14657 143 aa11.32□□□□□ -0.6
LDLR-202ENST00000455727 ANKRD39Q53RE8 183 aa11.32□□□□□ -0.6
LDLR-202ENST00000455727 C10orf99Q6UWK7 81 aa11.32□□□□□ -0.6
LDLR-202ENST00000455727 DPH3P1Q9H4G8 78 aa11.32□□□□□ -0.6
LDLR-202ENST00000455727 TRAV26-2A0A0B4J265 109 aa11.32□□□□□ -0.6
LDLR-202ENST00000455727 SRD5A1P18405 259 aa11.32□□□□□ -0.6
LDLR-202ENST00000455727 BVES-AS1Q5T3Y7 98 aa11.32□□□□□ -0.6
LDLR-202ENST00000455727 ZMAT4Q9H898 229 aa11.32□□□□□ -0.6
LDLR-202ENST00000455727 FAM208BQ5VWN6 2430 aa11.31□□□□□ -0.6
LDLR-202ENST00000455727 A1L4Q6 167 aa11.31□□□□□ -0.6
LDLR-202ENST00000455727 M0R381 172 aa11.31□□□□□ -0.6
LDLR-202ENST00000455727 LGALS9O00182 355 aa11.31□□□□□ -0.6
LDLR-202ENST00000455727 CD5LO43866 347 aa11.31□□□□□ -0.6
LDLR-202ENST00000455727 ATP5LO75964 103 aa11.31□□□□□ -0.6
LDLR-202ENST00000455727 LGALS1P09382 135 aaKnown RBP11.31□□□□□ -0.6
LDLR-202ENST00000455727 FGF6P10767 208 aa11.31□□□□□ -0.6
LDLR-202ENST00000455727 Q6ZVH6 145 aa11.31□□□□□ -0.6
LDLR-202ENST00000455727 C18orf15Q96N68 181 aa11.31□□□□□ -0.6
LDLR-202ENST00000455727 ODF3Q96PU9 254 aa11.31□□□□□ -0.6
LDLR-202ENST00000455727 PRRC2AP48634 2157 aaKnown RBP11.31□□□□□ -0.6
LDLR-202ENST00000455727 CCL25O15444 150 aa11.31□□□□□ -0.6
LDLR-202ENST00000455727 RNASE3P12724 160 aaKnown RBP11.31□□□□□ -0.6
LDLR-202ENST00000455727 PTTG1IPP53801 180 aa11.31□□□□□ -0.6
LDLR-202ENST00000455727 KIR3DS1Q14943 382 aa11.31□□□□□ -0.6
LDLR-202ENST00000455727 DEFB113Q30KQ7 82 aa11.31□□□□□ -0.6
LDLR-202ENST00000455727 C2orf91Q6ZV80 131 aa11.31□□□□□ -0.6
LDLR-202ENST00000455727 RNF152Q8N8N0 203 aa11.31□□□□□ -0.6
LDLR-202ENST00000455727 C20orf78Q9BR46 151 aa11.31□□□□□ -0.6
LDLR-202ENST00000455727 ZNF702PQ9H963 129 aa11.31□□□□□ -0.6
LDLR-202ENST00000455727 NXPH4O95158 308 aa11.3□□□□□ -0.6
LDLR-202ENST00000455727 SMIM17P0DL12 118 aa11.3□□□□□ -0.6
LDLR-202ENST00000455727 ODF1Q14990 250 aa11.3□□□□□ -0.6
LDLR-202ENST00000455727 WFDC3Q8IUB2 231 aa11.3□□□□□ -0.6
LDLR-202ENST00000455727 BOD1L2Q8IYS8 172 aa11.3□□□□□ -0.6
LDLR-202ENST00000455727 UBE2E2Q96LR5 201 aa11.3□□□□□ -0.6
LDLR-202ENST00000455727 DKK2Q9UBU2 259 aa11.3□□□□□ -0.6
LDLR-202ENST00000455727 CSMD2Q7Z408 3487 aa11.3□□□□□ -0.6
LDLR-202ENST00000455727 K7EMI3 77 aa11.3□□□□□ -0.6
LDLR-202ENST00000455727 GNRH2O43555 120 aa11.3□□□□□ -0.6
LDLR-202ENST00000455727 UBE2V1Q13404 147 aa11.3□□□□□ -0.6
LDLR-202ENST00000455727 SMIM2Q9BVW6 85 aa11.3□□□□□ -0.6
LDLR-202ENST00000455727 ZFYVE26Q68DK2 2539 aa11.3□□□□□ -0.6
LDLR-202ENST00000455727 KRTAP10-9P60411 292 aa11.29□□□□□ -0.6
LDLR-202ENST00000455727 POM121L12Q8N7R1 296 aa11.29□□□□□ -0.6
LDLR-202ENST00000455727 LRRK2Q5S007 2527 aa11.29□□□□□ -0.6
LDLR-202ENST00000455727 K7EQG2 157 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 94 ms