RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 SMIM27A0A1W2PRY6 76 aa5.73□□□□□ -1.49
SYNE1-213ENST00000448038 A8MWV9 139 aa5.73□□□□□ -1.49
SYNE1-213ENST00000448038 INAFM1C9JVW0 142 aa5.73□□□□□ -1.49
SYNE1-213ENST00000448038 COX6CP09669 75 aa5.73□□□□□ -1.49
SYNE1-213ENST00000448038 TRPT1Q86TN4 253 aaKnown RBP5.73□□□□□ -1.49
SYNE1-213ENST00000448038 ARL17AQ8IVW1 177 aa5.73□□□□□ -1.49
SYNE1-213ENST00000448038 UBE2DNLQ8IWF7 75 aa5.73□□□□□ -1.49
SYNE1-213ENST00000448038 LENEPQ9Y5L5 61 aa5.73□□□□□ -1.49
SYNE1-213ENST00000448038 TNRC6BQ9UPQ9 1833 aaKnown RBP5.72□□□□□ -1.49
SYNE1-213ENST00000448038 C5orf42Q9H799 3197 aa5.72□□□□□ -1.49
SYNE1-213ENST00000448038 TMEM158Q8WZ71 300 aa5.72□□□□□ -1.49
SYNE1-213ENST00000448038 ZNF48Q96MX3 618 aaPredicted RBP5.72□□□□□ -1.49
SYNE1-213ENST00000448038 A0A1W2PPR1 153 aa5.72□□□□□ -1.49
SYNE1-213ENST00000448038 F5H768 121 aa5.72□□□□□ -1.49
SYNE1-213ENST00000448038 K7EN84 100 aa5.72□□□□□ -1.49
SYNE1-213ENST00000448038 LBHQ53QV2 105 aaPredicted RBP5.72□□□□□ -1.49
SYNE1-213ENST00000448038 UNQ9165/PRO28630Q6UXU0 137 aa5.72□□□□□ -1.49
SYNE1-213ENST00000448038 MKI67P46013 3256 aaKnown RBP5.72□□□□□ -1.49
SYNE1-213ENST00000448038 A8MWP6 167 aa5.72□□□□□ -1.49
SYNE1-213ENST00000448038 IGKCP01834 107 aa5.72□□□□□ -1.49
SYNE1-213ENST00000448038 IGHG4P01861 327 aa5.72□□□□□ -1.49
SYNE1-213ENST00000448038 CRYGBP07316 175 aa5.72□□□□□ -1.49
SYNE1-213ENST00000448038 MYCNOSP40205 109 aa5.72□□□□□ -1.49
SYNE1-213ENST00000448038 ADAMTS20P59510 1910 aa5.72□□□□□ -1.49
SYNE1-213ENST00000448038 KRTAP10-9P60411 292 aa5.72□□□□□ -1.49
SYNE1-213ENST00000448038 OR5A1Q8NGJ0 315 aa5.72□□□□□ -1.49
SYNE1-213ENST00000448038 NDUFS6O75380 124 aaKnown RBP5.72□□□□□ -1.49
SYNE1-213ENST00000448038 IGF1P05019 195 aa5.72□□□□□ -1.49
SYNE1-213ENST00000448038 LINC01559Q495D7 138 aa5.72□□□□□ -1.49
SYNE1-213ENST00000448038 LINC00469Q8N7U9 141 aa5.72□□□□□ -1.49
SYNE1-213ENST00000448038 EGR2P11161 476 aaPredicted RBP5.72□□□□□ -1.49
SYNE1-213ENST00000448038 BBC3Q96PG8 261 aaPredicted RBP5.72□□□□□ -1.49
SYNE1-213ENST00000448038 LOC105371267A0A1B0GV96 52 aa5.71□□□□□ -1.49
SYNE1-213ENST00000448038 GAGE12JA6NER3 117 aa5.71□□□□□ -1.49
SYNE1-213ENST00000448038 CTAG1AP78358 180 aa5.71□□□□□ -1.49
SYNE1-213ENST00000448038 GAGE1Q13065 139 aa5.71□□□□□ -1.49
SYNE1-213ENST00000448038 GAGE4Q13068 117 aa5.71□□□□□ -1.49
SYNE1-213ENST00000448038 GAGE5Q13069 117 aa5.71□□□□□ -1.49
SYNE1-213ENST00000448038 GAGE13Q4V321 117 aa5.71□□□□□ -1.49
SYNE1-213ENST00000448038 OR13C6PQ8NH95 151 aa5.71□□□□□ -1.49
SYNE1-213ENST00000448038 CCDC140Q96MF4 163 aa5.71□□□□□ -1.49
SYNE1-213ENST00000448038 IGKV1D-37A0A075B6S9 117 aa5.71□□□□□ -1.5
SYNE1-213ENST00000448038 GNRH2O43555 120 aa5.71□□□□□ -1.5
SYNE1-213ENST00000448038 ARL6IP6Q8N6S5 226 aa5.71□□□□□ -1.5
SYNE1-213ENST00000448038 C1orf159Q96HA4 380 aa5.71□□□□□ -1.5
SYNE1-213ENST00000448038 TRAV9-2A0A087WT02 112 aa5.71□□□□□ -1.5
SYNE1-213ENST00000448038 CD300EQ496F6 205 aaPredicted RBP5.71□□□□□ -1.5
SYNE1-213ENST00000448038 MRPL51Q4U2R6 128 aaKnown RBP5.71□□□□□ -1.5
SYNE1-213ENST00000448038 TEX43Q6ZNM6 134 aa5.71□□□□□ -1.5
SYNE1-213ENST00000448038 PYGO2Q9BRQ0 406 aa5.71□□□□□ -1.5
SYNE1-213ENST00000448038 SPXQ9BT56 116 aa5.71□□□□□ -1.5
SYNE1-213ENST00000448038 CHD9Q3L8U1 2897 aa5.71□□□□□ -1.5
SYNE1-213ENST00000448038 HCFC1P51610 2035 aa5.7□□□□□ -1.5
SYNE1-213ENST00000448038 ZNF295-AS1Q8N0V1 137 aa5.7□□□□□ -1.5
SYNE1-213ENST00000448038 VPS25Q9BRG1 176 aa5.7□□□□□ -1.5
SYNE1-213ENST00000448038 GSN-AS1Q9NRJ2 163 aa5.7□□□□□ -1.5
SYNE1-213ENST00000448038 MYO9AB2RTY4 2548 aa5.7□□□□□ -1.5
SYNE1-213ENST00000448038 IGHV3-64A0A075B6Q5 118 aa5.7□□□□□ -1.5
SYNE1-213ENST00000448038 TRAV26-2A0A0B4J265 109 aa5.7□□□□□ -1.5
SYNE1-213ENST00000448038 SLAQ13239 276 aa5.7□□□□□ -1.5
SYNE1-213ENST00000448038 WIPF2Q8TF74 440 aaPredicted RBP5.7□□□□□ -1.5
SYNE1-213ENST00000448038 LY6G6DO95868 133 aa5.7□□□□□ -1.5
SYNE1-213ENST00000448038 RPL24P83731 157 aaKnown RBP5.7□□□□□ -1.5
SYNE1-213ENST00000448038 C18orf32Q8TCD1 76 aa5.7□□□□□ -1.5
SYNE1-213ENST00000448038 PRAC2D3DTV9 90 aa5.7□□□□□ -1.5
SYNE1-213ENST00000448038 TYMSP04818 313 aa5.7□□□□□ -1.5
SYNE1-213ENST00000448038 MRPL16Q9NX20 251 aaKnown RBP5.7□□□□□ -1.5
SYNE1-213ENST00000448038 ZFYVE26Q68DK2 2539 aa5.7□□□□□ -1.5
SYNE1-213ENST00000448038 ZNF462Q96JM2 2506 aa5.7□□□□□ -1.5
SYNE1-213ENST00000448038 M0R2P5 195 aa5.69□□□□□ -1.5
SYNE1-213ENST00000448038 FABP2P12104 132 aa5.69□□□□□ -1.5
SYNE1-213ENST00000448038 TLN2Q9Y4G6 2542 aa5.69□□□□□ -1.5
SYNE1-213ENST00000448038 PTPRBP23467 1997 aa5.69□□□□□ -1.5
SYNE1-213ENST00000448038 Q0VG73 95 aa5.69□□□□□ -1.5
SYNE1-213ENST00000448038 DLX4Q92988 240 aaPredicted RBP5.69□□□□□ -1.5
SYNE1-213ENST00000448038 SDHAF1A6NFY7 115 aa5.69□□□□□ -1.5
SYNE1-213ENST00000448038 ZNRF2Q8NHG8 242 aa5.69□□□□□ -1.5
SYNE1-213ENST00000448038 MRAPQ8TCY5 172 aa5.69□□□□□ -1.5
SYNE1-213ENST00000448038 TRAV25A0A0B4J276 109 aa5.69□□□□□ -1.5
SYNE1-213ENST00000448038 C3orf79P0CE67 100 aa5.69□□□□□ -1.5
SYNE1-213ENST00000448038 IGLC2P0DOY2 106 aa5.69□□□□□ -1.5
SYNE1-213ENST00000448038 TMEM61Q8N0U2 210 aa5.69□□□□□ -1.5
SYNE1-213ENST00000448038 NOP10Q9NPE3 64 aaKnown RBP5.69□□□□□ -1.5
SYNE1-213ENST00000448038 TANC2Q9HCD6 1990 aa5.69□□□□□ -1.5
SYNE1-213ENST00000448038 TRAV13-1A0A0B4J241 112 aa5.68□□□□□ -1.5
SYNE1-213ENST00000448038 Q6ZSV7 163 aa5.68□□□□□ -1.5
SYNE1-213ENST00000448038 ZNF815PA8K554 130 aa5.68□□□□□ -1.5
SYNE1-213ENST00000448038 SPRY2O43597 315 aa5.68□□□□□ -1.5
SYNE1-213ENST00000448038 DEFB1P60022 68 aa5.68□□□□□ -1.5
SYNE1-213ENST00000448038 USP9XQ93008 2570 aaPredicted RBP5.68□□□□□ -1.5
SYNE1-213ENST00000448038 I3L3M4 83 aa5.68□□□□□ -1.5
SYNE1-213ENST00000448038 SMIM13P0DJ93 91 aa5.68□□□□□ -1.5
SYNE1-213ENST00000448038 Q8N8P6 123 aa5.68□□□□□ -1.5
SYNE1-213ENST00000448038 U3KQE9 123 aa5.68□□□□□ -1.5
SYNE1-213ENST00000448038 IGHV3-38A0A0C4DH36 116 aa5.68□□□□□ -1.5
SYNE1-213ENST00000448038 GAGE10A6NGK3 116 aa5.68□□□□□ -1.5
SYNE1-213ENST00000448038 SYS1-DBNDD2H3BUS1 97 aa5.68□□□□□ -1.5
SYNE1-213ENST00000448038 SEC11AP67812 179 aa5.68□□□□□ -1.5
SYNE1-213ENST00000448038 MRPS16Q9Y3D3 137 aaKnown RBP5.68□□□□□ -1.5
SYNE1-213ENST00000448038 MORN3Q6PF18 240 aaPredicted RBP5.68□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 64.9 ms