RNA–Protein interactions for RNA: ENST00000444458.5

CCDC88A-208, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 4,236 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-208ENST00000444458 MDFICQ9P1T7 246 aa1.51□□□□□ -2.17
CCDC88A-208ENST00000444458 LAMB1P07942 1786 aa1.5□□□□□ -2.17
CCDC88A-208ENST00000444458 COL5A3P25940 1745 aaPredicted RBP1.5□□□□□ -2.17
CCDC88A-208ENST00000444458 TUBGCP6Q96RT7 1819 aa1.5□□□□□ -2.17
CCDC88A-208ENST00000444458 SPRR5A0A1B0GTR4 108 aa1.5□□□□□ -2.17
CCDC88A-208ENST00000444458 HMSDA8MTL9 139 aa1.5□□□□□ -2.17
CCDC88A-208ENST00000444458 C17orf112F2Z3M2 114 aa1.5□□□□□ -2.17
CCDC88A-208ENST00000444458 SNCGO76070 127 aa1.5□□□□□ -2.17
CCDC88A-208ENST00000444458 COX6A1P12074 109 aa1.5□□□□□ -2.17
CCDC88A-208ENST00000444458 GKN2Q86XP6 184 aa1.5□□□□□ -2.17
CCDC88A-208ENST00000444458 PLPP5Q8NEB5 264 aa1.5□□□□□ -2.17
CCDC88A-208ENST00000444458 DIRC1Q969H9 104 aa1.5□□□□□ -2.17
CCDC88A-208ENST00000444458 SNRNP25Q9BV90 132 aaKnown RBP1.5□□□□□ -2.17
CCDC88A-208ENST00000444458 ZNF443Q9Y2A4 671 aaPredicted RBP1.5□□□□□ -2.17
CCDC88A-208ENST00000444458 ZNF831Q5JPB2 1677 aa1.5□□□□□ -2.17
CCDC88A-208ENST00000444458 PPLO60437 1756 aa1.5□□□□□ -2.17
CCDC88A-208ENST00000444458 DLEC1Q9Y238 1755 aa1.5□□□□□ -2.17
CCDC88A-208ENST00000444458 C5P01031 1676 aa1.5□□□□□ -2.17
CCDC88A-208ENST00000444458 C3orf85A0A1B0GTC6 90 aa1.5□□□□□ -2.17
CCDC88A-208ENST00000444458 SPAARA0A1B0GVQ0 90 aa1.5□□□□□ -2.17
CCDC88A-208ENST00000444458 ZNF705FA8MVS1 300 aaPredicted RBP1.5□□□□□ -2.17
CCDC88A-208ENST00000444458 PSCAO43653 123 aa1.5□□□□□ -2.17
CCDC88A-208ENST00000444458 DNAH10OSP0CZ25 163 aa1.5□□□□□ -2.17
CCDC88A-208ENST00000444458 SLC25A4P12235 298 aa1.5□□□□□ -2.17
CCDC88A-208ENST00000444458 MUC1P15941 1255 aaPredicted RBP1.5□□□□□ -2.17
CCDC88A-208ENST00000444458 LPAL2Q16609 132 aa1.5□□□□□ -2.17
CCDC88A-208ENST00000444458 SPINT4Q6UDR6 99 aa1.5□□□□□ -2.17
CCDC88A-208ENST00000444458 OR5AS1Q8N127 324 aa1.5□□□□□ -2.17
CCDC88A-208ENST00000444458 SFT2D1Q8WV19 159 aa1.5□□□□□ -2.17
CCDC88A-208ENST00000444458 POP5Q969H6 163 aaKnown RBP1.5□□□□□ -2.17
CCDC88A-208ENST00000444458 ECM29Q5VYK3 1845 aa1.5□□□□□ -2.17
CCDC88A-208ENST00000444458 POLEQ07864 2286 aa1.5□□□□□ -2.17
CCDC88A-208ENST00000444458 ZNF407Q9C0G0 2248 aa1.5□□□□□ -2.17
CCDC88A-208ENST00000444458 TRBV20-1A0A075B6N2 111 aa1.5□□□□□ -2.17
CCDC88A-208ENST00000444458 TRAV12-2A0A075B6T6 113 aa1.5□□□□□ -2.17
CCDC88A-208ENST00000444458 A0A0J9YX75 114 aa1.5□□□□□ -2.17
CCDC88A-208ENST00000444458 ZNF846Q147U1 533 aa1.5□□□□□ -2.17
CCDC88A-208ENST00000444458 PYDC2Q56P42 97 aa1.5□□□□□ -2.17
CCDC88A-208ENST00000444458 Q56UQ5 140 aa1.5□□□□□ -2.17
CCDC88A-208ENST00000444458 LINC00311Q8N616 119 aa1.5□□□□□ -2.17
CCDC88A-208ENST00000444458 LINC00612Q8N6U2 182 aa1.5□□□□□ -2.17
CCDC88A-208ENST00000444458 KLF14Q8TD94 323 aaPredicted RBP1.5□□□□□ -2.17
CCDC88A-208ENST00000444458 SMIM7Q9BQ49 75 aa1.5□□□□□ -2.17
CCDC88A-208ENST00000444458 DAPK1P53355 1430 aa1.5□□□□□ -2.17
CCDC88A-208ENST00000444458 N4BP2Q86UW6 1770 aaPredicted RBP1.5□□□□□ -2.17
CCDC88A-208ENST00000444458 PLXNB1O43157 2135 aa1.5□□□□□ -2.17
CCDC88A-208ENST00000444458 FLNAP21333 2647 aaKnown RBP1.5□□□□□ -2.17
CCDC88A-208ENST00000444458 KIAA1671Q9BY89 1806 aa1.49□□□□□ -2.17
CCDC88A-208ENST00000444458 IGLV3-12A0A075B6K2 115 aa1.49□□□□□ -2.17
CCDC88A-208ENST00000444458 TRAV40A0A0B4J280 105 aa1.49□□□□□ -2.17
CCDC88A-208ENST00000444458 IGHV1-24A0A0C4DH33 117 aa1.49□□□□□ -2.17
CCDC88A-208ENST00000444458 CCDC179H3BU77 68 aa1.49□□□□□ -2.17
CCDC88A-208ENST00000444458 CCL25O15444 150 aa1.49□□□□□ -2.17
CCDC88A-208ENST00000444458 SPINK8P0C7L1 97 aa1.49□□□□□ -2.17
CCDC88A-208ENST00000444458 ZNF90Q03938 601 aa1.49□□□□□ -2.17
CCDC88A-208ENST00000444458 CATR1Q13166 79 aa1.49□□□□□ -2.17
CCDC88A-208ENST00000444458 SPANXN5Q5MJ07 72 aa1.49□□□□□ -2.17
CCDC88A-208ENST00000444458 KRTAP7-1Q8IUC3 87 aa1.49□□□□□ -2.17
CCDC88A-208ENST00000444458 SDF2Q99470 211 aa1.49□□□□□ -2.17
CCDC88A-208ENST00000444458 AP4S1Q9Y587 144 aa1.49□□□□□ -2.17
CCDC88A-208ENST00000444458 MPC1Q9Y5U8 109 aa1.49□□□□□ -2.17
CCDC88A-208ENST00000444458 DIDO1Q9BTC0 2240 aaKnown RBP1.49□□□□□ -2.17
CCDC88A-208ENST00000444458 ARHGAP21Q5T5U3 1957 aa1.49□□□□□ -2.17
CCDC88A-208ENST00000444458 PIGBOS1A0A0B4J2F0 54 aa1.49□□□□□ -2.17
CCDC88A-208ENST00000444458 hDV103S1A0JD37 113 aa1.49□□□□□ -2.17
CCDC88A-208ENST00000444458 K7EM74 188 aa1.49□□□□□ -2.17
CCDC88A-208ENST00000444458 CRPP02741 224 aa1.49□□□□□ -2.17
CCDC88A-208ENST00000444458 FOXA1P55317 472 aa1.49□□□□□ -2.17
CCDC88A-208ENST00000444458 Q6ZR54 194 aa1.49□□□□□ -2.17
CCDC88A-208ENST00000444458 Q6ZUT4 128 aa1.49□□□□□ -2.17
CCDC88A-208ENST00000444458 MAPK1IP1LQ8NDC0 245 aa1.49□□□□□ -2.17
CCDC88A-208ENST00000444458 LSM2Q9Y333 95 aaKnown RBP1.49□□□□□ -2.17
CCDC88A-208ENST00000444458 V9GYS6 101 aa1.49□□□□□ -2.17
CCDC88A-208ENST00000444458 ANKRD26Q9UPS8 1709 aa1.49□□□□□ -2.17
CCDC88A-208ENST00000444458 COL4A5P29400 1685 aa1.49□□□□□ -2.17
CCDC88A-208ENST00000444458 AHCTF1Q8WYP5 2266 aa1.49□□□□□ -2.17
CCDC88A-208ENST00000444458 IGHV1-18A0A0C4DH31 117 aa1.49□□□□□ -2.17
CCDC88A-208ENST00000444458 OR1I1O60431 355 aa1.49□□□□□ -2.17
CCDC88A-208ENST00000444458 HYPMO75409 117 aa1.49□□□□□ -2.17
CCDC88A-208ENST00000444458 IFITM1P13164 125 aa1.49□□□□□ -2.17
CCDC88A-208ENST00000444458 KRTAP20-1Q3LI63 56 aa1.49□□□□□ -2.17
CCDC88A-208ENST00000444458 TMEM254Q8TBM7 123 aa1.49□□□□□ -2.17
CCDC88A-208ENST00000444458 DPH3Q96FX2 82 aa1.49□□□□□ -2.17
CCDC88A-208ENST00000444458 CDK5RAP2Q96SN8 1893 aa1.49□□□□□ -2.17
CCDC88A-208ENST00000444458 METTL1Q9UBP6 276 aaKnown RBP1.49□□□□□ -2.17
CCDC88A-208ENST00000444458 PTPRQQ9UMZ3 2332 aa1.49□□□□□ -2.17
CCDC88A-208ENST00000444458 CHD6Q8TD26 2715 aa1.49□□□□□ -2.17
CCDC88A-208ENST00000444458 BCORQ6W2J9 1755 aa1.48□□□□□ -2.17
CCDC88A-208ENST00000444458 TRAV1-1A0A0B4J248 108 aa1.48□□□□□ -2.17
CCDC88A-208ENST00000444458 A0A1B0GVG6 124 aa1.48□□□□□ -2.17
CCDC88A-208ENST00000444458 EDF1O60869 148 aaKnown RBP1.48□□□□□ -2.17
CCDC88A-208ENST00000444458 SHBGP04278 402 aa1.48□□□□□ -2.17
CCDC88A-208ENST00000444458 OR4X2Q8NGF9 303 aa1.48□□□□□ -2.17
CCDC88A-208ENST00000444458 OTOSQ8NHW6 89 aa1.48□□□□□ -2.17
CCDC88A-208ENST00000444458 SPTSSAQ969W0 71 aa1.48□□□□□ -2.17
CCDC88A-208ENST00000444458 C14orf132Q9NPU4 83 aa1.48□□□□□ -2.17
CCDC88A-208ENST00000444458 DNAJC15Q9Y5T4 150 aa1.48□□□□□ -2.17
CCDC88A-208ENST00000444458 MRC1P22897 1456 aa1.48□□□□□ -2.17
CCDC88A-208ENST00000444458 C4AP0C0L4 1744 aa1.48□□□□□ -2.17
CCDC88A-208ENST00000444458 FAM24AA6NFZ4 105 aa1.48□□□□□ -2.17
Retrieved 100 of 20,778 RNA–protein pairs in 113.1 ms