RNA–Protein interactions for RNA: ENST00000441114.5

SHH-204, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 888 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-204ENST00000441114 AKR1C3P42330 323 aa13.15□□□□□ -0.3
SHH-204ENST00000441114 OR5I1Q13606 314 aa13.15□□□□□ -0.3
SHH-204ENST00000441114 FAM210BQ96KR6 192 aa13.15□□□□□ -0.3
SHH-204ENST00000441114 BOLA1Q9Y3E2 137 aa13.15□□□□□ -0.3
SHH-204ENST00000441114 ALMS1Q8TCU4 4167 aa13.15□□□□□ -0.3
SHH-204ENST00000441114 LYSTQ99698 3801 aa13.14□□□□□ -0.31
SHH-204ENST00000441114 SPINK4O60575 86 aa13.14□□□□□ -0.31
SHH-204ENST00000441114 ALKAL2Q6UX46 152 aa13.14□□□□□ -0.31
SHH-204ENST00000441114 FMC1Q96HJ9 113 aa13.14□□□□□ -0.31
SHH-204ENST00000441114 SDF2L1Q9HCN8 221 aa13.14□□□□□ -0.31
SHH-204ENST00000441114 TRAV1-1A0A0B4J248 108 aa13.13□□□□□ -0.31
SHH-204ENST00000441114 SCO2A0A1W2PP80 73 aa13.13□□□□□ -0.31
SHH-204ENST00000441114 TYMSP04818 313 aa13.13□□□□□ -0.31
SHH-204ENST00000441114 PFN1P07737 140 aaKnown RBP13.13□□□□□ -0.31
SHH-204ENST00000441114 TDRG1Q3Y452 100 aa13.13□□□□□ -0.31
SHH-204ENST00000441114 KCNS1Q96KK3 526 aa13.13□□□□□ -0.31
SHH-204ENST00000441114 TCEAL7Q9BRU2 100 aa13.13□□□□□ -0.31
SHH-204ENST00000441114 C11orf21Q9P2W6 132 aa13.13□□□□□ -0.31
SHH-204ENST00000441114 SACSQ9NZJ4 4579 aa13.12□□□□□ -0.31
SHH-204ENST00000441114 MANBALQ9NQG1 85 aa13.12□□□□□ -0.31
SHH-204ENST00000441114 RYR3Q15413 4870 aa13.12□□□□□ -0.31
SHH-204ENST00000441114 IGHV3-16A0A0C4DH30 117 aa13.11□□□□□ -0.31
SHH-204ENST00000441114 NUDT3O95989 172 aa13.11□□□□□ -0.31
SHH-204ENST00000441114 IGHV3-53P01767 116 aa13.11□□□□□ -0.31
SHH-204ENST00000441114 HOXA5P20719 270 aa13.11□□□□□ -0.31
SHH-204ENST00000441114 ZFP30Q9Y2G7 519 aa13.11□□□□□ -0.31
SHH-204ENST00000441114 A0A0J9YY99 117 aa13.1□□□□□ -0.31
SHH-204ENST00000441114 FABP5P3A8MUU1 101 aa13.1□□□□□ -0.31
SHH-204ENST00000441114 LGALS9BQ3B8N2 356 aa13.1□□□□□ -0.31
SHH-204ENST00000441114 NHLRC2Q8NBF2 726 aa13.1□□□□□ -0.31
SHH-204ENST00000441114 ZC2HC1AQ96GY0 325 aa13.1□□□□□ -0.31
SHH-204ENST00000441114 SPXQ9BT56 116 aa13.1□□□□□ -0.31
SHH-204ENST00000441114 RYR2Q92736 4967 aa13.1□□□□□ -0.31
SHH-204ENST00000441114 C15orf53Q8NAA6 179 aa13.09□□□□□ -0.31
SHH-204ENST00000441114 DNAH1Q9P2D7 4330 aa13.08□□□□□ -0.32
SHH-204ENST00000441114 TRAV26-1A0A087WT03 109 aa13.08□□□□□ -0.32
SHH-204ENST00000441114 TRBV6-1A0A0K0K1D8 114 aa13.08□□□□□ -0.32
SHH-204ENST00000441114 LTAP01374 205 aa13.08□□□□□ -0.32
SHH-204ENST00000441114 IFNA1P01562 189 aa13.08□□□□□ -0.32
SHH-204ENST00000441114 ORM1P02763 201 aa13.08□□□□□ -0.32
SHH-204ENST00000441114 P0DMU3 169 aa13.08□□□□□ -0.32
SHH-204ENST00000441114 FAM231AP0DMU4 169 aa13.08□□□□□ -0.32
SHH-204ENST00000441114 FAM231CP0DMU5 169 aa13.08□□□□□ -0.32
SHH-204ENST00000441114 CRIP1P50238 77 aa13.08□□□□□ -0.32
SHH-204ENST00000441114 UBE2DNLQ8IWF7 75 aa13.08□□□□□ -0.32
SHH-204ENST00000441114 S100A9P06702 114 aaKnown RBP13.07□□□□□ -0.32
SHH-204ENST00000441114 HYDINQ4G0P3 5121 aa13.07□□□□□ -0.32
SHH-204ENST00000441114 IGKV3D-20A0A0C4DH25 116 aa13.06□□□□□ -0.32
SHH-204ENST00000441114 C9JCJ5 164 aa13.06□□□□□ -0.32
SHH-204ENST00000441114 M0R036 132 aa13.06□□□□□ -0.32
SHH-204ENST00000441114 M0R2P5 195 aa13.06□□□□□ -0.32
SHH-204ENST00000441114 SH2D1AO60880 128 aa13.06□□□□□ -0.32
SHH-204ENST00000441114 BAGE2Q86Y30 109 aa13.06□□□□□ -0.32
SHH-204ENST00000441114 C18orf15Q96N68 181 aa13.06□□□□□ -0.32
SHH-204ENST00000441114 B4DEV8 164 aa13.05□□□□□ -0.32
SHH-204ENST00000441114 SFTA3P0C7M3 94 aa13.05□□□□□ -0.32
SHH-204ENST00000441114 BLOC1S1P78537 153 aa13.05□□□□□ -0.32
SHH-204ENST00000441114 FAM162BQ5T6X4 162 aa13.05□□□□□ -0.32
SHH-204ENST00000441114 RASL10AQ92737 203 aa13.05□□□□□ -0.32
SHH-204ENST00000441114 DERL1Q9BUN8 251 aa13.05□□□□□ -0.32
SHH-204ENST00000441114 TMSB15BA0A087X1C1 80 aa13.04□□□□□ -0.32
SHH-204ENST00000441114 BCL2P10415 239 aa13.04□□□□□ -0.32
SHH-204ENST00000441114 S100A4P26447 101 aaKnown RBP13.04□□□□□ -0.32
SHH-204ENST00000441114 RPL35P42766 123 aaKnown RBP13.04□□□□□ -0.32
SHH-204ENST00000441114 MEF2BQ02080 365 aaPredicted RBP13.04□□□□□ -0.32
SHH-204ENST00000441114 COX8CQ7Z4L0 72 aa13.04□□□□□ -0.32
SHH-204ENST00000441114 POM121L12Q8N7R1 296 aa13.04□□□□□ -0.32
SHH-204ENST00000441114 TXNDC17Q9BRA2 123 aa13.04□□□□□ -0.32
SHH-204ENST00000441114 NACAE9PAV3 2078 aa13.03□□□□□ -0.32
SHH-204ENST00000441114 MUC4Q99102 2169 aa13.03□□□□□ -0.32
SHH-204ENST00000441114 TRGV4A0A0C4DH28 118 aa13.03□□□□□ -0.32
SHH-204ENST00000441114 GRIFINA4D1Z8 144 aa13.03□□□□□ -0.32
SHH-204ENST00000441114 RNASE3P12724 160 aaKnown RBP13.03□□□□□ -0.32
SHH-204ENST00000441114 ASIPP42127 132 aa13.03□□□□□ -0.32
SHH-204ENST00000441114 ZNF674Q2M3X9 581 aa13.03□□□□□ -0.32
SHH-204ENST00000441114 C11orf52Q96A22 123 aa13.03□□□□□ -0.32
SHH-204ENST00000441114 ZNF479Q96JC4 524 aa13.03□□□□□ -0.32
SHH-204ENST00000441114 MED9Q9NWA0 146 aa13.03□□□□□ -0.32
SHH-204ENST00000441114 VAX2Q9UIW0 290 aa13.03□□□□□ -0.32
SHH-204ENST00000441114 KRBOX1C9JBD0 128 aa13.02□□□□□ -0.33
SHH-204ENST00000441114 FHL2Q14192 279 aa13.02□□□□□ -0.33
SHH-204ENST00000441114 ZNF876PQ49A33 203 aa13.02□□□□□ -0.33
SHH-204ENST00000441114 PRR27Q6MZM9 219 aa13.02□□□□□ -0.33
SHH-204ENST00000441114 OR4C5Q8NGB2 326 aa13.02□□□□□ -0.33
SHH-204ENST00000441114 VSIG2Q96IQ7 327 aa13.02□□□□□ -0.33
SHH-204ENST00000441114 C9orf85Q96MD7 179 aa13.02□□□□□ -0.33
SHH-204ENST00000441114 RAB19A4D1S5 217 aa13.01□□□□□ -0.33
SHH-204ENST00000441114 PGPEP1LA6NFU8 196 aa13.01□□□□□ -0.33
SHH-204ENST00000441114 PAX4O43316 350 aa13.01□□□□□ -0.33
SHH-204ENST00000441114 PDE6DO43924 150 aa13.01□□□□□ -0.33
SHH-204ENST00000441114 HHLA3Q9XRX5 114 aa13.01□□□□□ -0.33
SHH-204ENST00000441114 TRAV4A0A0B4J268 109 aa13□□□□□ -0.33
SHH-204ENST00000441114 H3BVH4 76 aa13□□□□□ -0.33
SHH-204ENST00000441114 CENPWQ5EE01 88 aa13□□□□□ -0.33
SHH-204ENST00000441114 MLST8Q9BVC4 326 aa13□□□□□ -0.33
SHH-204ENST00000441114 MGST1P10620 155 aaKnown RBP12.99□□□□□ -0.33
SHH-204ENST00000441114 CRYBA4P53673 196 aa12.99□□□□□ -0.33
SHH-204ENST00000441114 RNF212Q495C1 297 aa12.99□□□□□ -0.33
SHH-204ENST00000441114 ZNF506Q5JVG8 444 aa12.99□□□□□ -0.33
SHH-204ENST00000441114 PRO0255Q9UI72 69 aa12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms