RNA–Protein interactions for RNA: ENST00000438120.5

PTPRF-209, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRF, Length 6,377 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-209ENST00000438120 PRR20CP86479 221 aa13.49□□□□□ -0.25
PTPRF-209ENST00000438120 PRR20DP86480 221 aa13.49□□□□□ -0.25
PTPRF-209ENST00000438120 PRR20BP86481 221 aa13.49□□□□□ -0.25
PTPRF-209ENST00000438120 PRR20AP86496 221 aa13.49□□□□□ -0.25
PTPRF-209ENST00000438120 CREBBPQ92793 2442 aa13.49□□□□□ -0.25
PTPRF-209ENST00000438120 K7ERJ3 54 aa13.49□□□□□ -0.25
PTPRF-209ENST00000438120 PLXND1Q9Y4D7 1925 aa13.49□□□□□ -0.25
PTPRF-209ENST00000438120 LTAP01374 205 aa13.49□□□□□ -0.25
PTPRF-209ENST00000438120 FOXI2Q6ZQN5 318 aa13.48□□□□□ -0.25
PTPRF-209ENST00000438120 CENPVL3A0A0U1RRI6 287 aa13.48□□□□□ -0.25
PTPRF-209ENST00000438120 CRLF1O75462 422 aa13.48□□□□□ -0.25
PTPRF-209ENST00000438120 MAJINQ3KP22 176 aa13.48□□□□□ -0.25
PTPRF-209ENST00000438120 NLRC5Q86WI3 1866 aa13.47□□□□□ -0.25
PTPRF-209ENST00000438120 GATA1P15976 413 aaPredicted RBP13.47□□□□□ -0.25
PTPRF-209ENST00000438120 HAMPP81172 84 aa13.47□□□□□ -0.25
PTPRF-209ENST00000438120 DEFB113Q30KQ7 82 aa13.47□□□□□ -0.25
PTPRF-209ENST00000438120 ZMAT4Q9H898 229 aa13.47□□□□□ -0.25
PTPRF-209ENST00000438120 C20orf144Q9BQM9 153 aa13.47□□□□□ -0.25
PTPRF-209ENST00000438120 IGLC2P0DOY2 106 aa13.47□□□□□ -0.25
PTPRF-209ENST00000438120 IGLC3P0DOY3 106 aa13.47□□□□□ -0.25
PTPRF-209ENST00000438120 GTF3C1Q12789 2109 aa13.46□□□□□ -0.25
PTPRF-209ENST00000438120 TRAV12-1A0A0B4J245 112 aa13.46□□□□□ -0.25
PTPRF-209ENST00000438120 LGALS9BQ3B8N2 356 aa13.46□□□□□ -0.25
PTPRF-209ENST00000438120 LGALS9CQ6DKI2 356 aa13.46□□□□□ -0.25
PTPRF-209ENST00000438120 SHANK1Q9Y566 2161 aa13.46□□□□□ -0.26
PTPRF-209ENST00000438120 J3QQQ9 107 aa13.46□□□□□ -0.26
PTPRF-209ENST00000438120 ESM1Q9NQ30 184 aa13.46□□□□□ -0.26
PTPRF-209ENST00000438120 F8VRH5 84 aa13.46□□□□□ -0.26
PTPRF-209ENST00000438120 RBMY1FQ15415 496 aaKnown RBP13.46□□□□□ -0.26
PTPRF-209ENST00000438120 MALRD1Q5VYJ5 2156 aa13.46□□□□□ -0.26
PTPRF-209ENST00000438120 HERVK_113P63121 156 aa13.45□□□□□ -0.26
PTPRF-209ENST00000438120 POU2AF1Q16633 256 aa13.45□□□□□ -0.26
PTPRF-209ENST00000438120 NOTCH4Q99466 2003 aa13.45□□□□□ -0.26
PTPRF-209ENST00000438120 TAL2Q16559 108 aa13.45□□□□□ -0.26
PTPRF-209ENST00000438120 ZFHX2Q9C0A1 2572 aaPredicted RBP13.45□□□□□ -0.26
PTPRF-209ENST00000438120 PLXNA2O75051 1894 aa13.45□□□□□ -0.26
PTPRF-209ENST00000438120 DKK4Q9UBT3 224 aa13.45□□□□□ -0.26
PTPRF-209ENST00000438120 COX8AP10176 69 aa13.45□□□□□ -0.26
PTPRF-209ENST00000438120 DYSFO75923 2080 aa13.45□□□□□ -0.26
PTPRF-209ENST00000438120 RHOHQ15669 191 aa13.44□□□□□ -0.26
PTPRF-209ENST00000438120 IGHV7-81A0A0B4J1V7 117 aa13.44□□□□□ -0.26
PTPRF-209ENST00000438120 TINCRA0A1B0GVN0 87 aa13.44□□□□□ -0.26
PTPRF-209ENST00000438120 H3BUA1 57 aa13.44□□□□□ -0.26
PTPRF-209ENST00000438120 C11orf52Q96A22 123 aa13.44□□□□□ -0.26
PTPRF-209ENST00000438120 C9orf118A6NHY6 69 aa13.44□□□□□ -0.26
PTPRF-209ENST00000438120 AJUBAQ96IF1 538 aa13.44□□□□□ -0.26
PTPRF-209ENST00000438120 LHBP01229 141 aa13.44□□□□□ -0.26
PTPRF-209ENST00000438120 OR11H6Q8NGC7 330 aa13.44□□□□□ -0.26
PTPRF-209ENST00000438120 PYGO2Q9BRQ0 406 aa13.43□□□□□ -0.26
PTPRF-209ENST00000438120 ETDBQ3ZM63 59 aa13.43□□□□□ -0.26
PTPRF-209ENST00000438120 CRYGCP07315 174 aa13.43□□□□□ -0.26
PTPRF-209ENST00000438120 ZGRF1Q86YA3 2104 aa13.43□□□□□ -0.26
PTPRF-209ENST00000438120 RMI2Q96E14 147 aa13.43□□□□□ -0.26
PTPRF-209ENST00000438120 CEND1Q8N111 149 aa13.43□□□□□ -0.26
PTPRF-209ENST00000438120 DEFB105AQ8NG35 78 aa13.43□□□□□ -0.26
PTPRF-209ENST00000438120 C20orf78Q9BR46 151 aa13.42□□□□□ -0.26
PTPRF-209ENST00000438120 PIFOQ8TCI5 191 aa13.42□□□□□ -0.26
PTPRF-209ENST00000438120 PRO1854Q9UHT4 67 aa13.42□□□□□ -0.26
PTPRF-209ENST00000438120 IGHV4-4A0A075B6R2 117 aa13.42□□□□□ -0.26
PTPRF-209ENST00000438120 C5orf38Q86SI9 138 aa13.42□□□□□ -0.26
PTPRF-209ENST00000438120 IGLV10-54A0A075B6I4 117 aa13.42□□□□□ -0.26
PTPRF-209ENST00000438120 UBE2BP63146 152 aa13.42□□□□□ -0.26
PTPRF-209ENST00000438120 RPL39LQ96EH5 51 aaKnown RBP13.42□□□□□ -0.26
PTPRF-209ENST00000438120 BVES-AS1Q5T3Y7 98 aa13.41□□□□□ -0.26
PTPRF-209ENST00000438120 C8orf31Q8N9H6 132 aa13.41□□□□□ -0.26
PTPRF-209ENST00000438120 ADORA2A-AS1P86434 159 aa13.41□□□□□ -0.26
PTPRF-209ENST00000438120 MRPL52Q86TS9 123 aaKnown RBP13.41□□□□□ -0.26
PTPRF-209ENST00000438120 INAFM2P0DMQ5 153 aa13.41□□□□□ -0.26
PTPRF-209ENST00000438120 WIPF2Q8TF74 440 aaPredicted RBP13.41□□□□□ -0.26
PTPRF-209ENST00000438120 CARD19Q96LW7 228 aa13.4□□□□□ -0.26
PTPRF-209ENST00000438120 TRBV20-1A0A075B6N2 111 aa13.4□□□□□ -0.26
PTPRF-209ENST00000438120 IGFL2Q6UWQ7 119 aa13.4□□□□□ -0.26
PTPRF-209ENST00000438120 AMTNQ6UX39 209 aa13.4□□□□□ -0.26
PTPRF-209ENST00000438120 GP9P14770 177 aa13.4□□□□□ -0.26
PTPRF-209ENST00000438120 ANAPC1Q9H1A4 1944 aa13.4□□□□□ -0.26
PTPRF-209ENST00000438120 RS1O15537 224 aa13.4□□□□□ -0.26
PTPRF-209ENST00000438120 I3L2K1 104 aa13.39□□□□□ -0.27
PTPRF-209ENST00000438120 Q9H8V8 135 aa13.39□□□□□ -0.27
PTPRF-209ENST00000438120 H3BMG7 143 aa13.39□□□□□ -0.27
PTPRF-209ENST00000438120 C10orf91Q5T1B1 145 aa13.39□□□□□ -0.27
PTPRF-209ENST00000438120 K7EIM0 57 aa13.39□□□□□ -0.27
PTPRF-209ENST00000438120 DSCR8Q96T75 97 aa13.39□□□□□ -0.27
PTPRF-209ENST00000438120 UBL5Q9BZL1 73 aa13.39□□□□□ -0.27
PTPRF-209ENST00000438120 IL15RAQ13261 267 aa13.39□□□□□ -0.27
PTPRF-209ENST00000438120 BOD1L2Q8IYS8 172 aa13.38□□□□□ -0.27
PTPRF-209ENST00000438120 MSRB1Q9NZV6 116 aa13.38□□□□□ -0.27
PTPRF-209ENST00000438120 IGHV3-30P01768 117 aa13.38□□□□□ -0.27
PTPRF-209ENST00000438120 IGHV3-33P01772 117 aa13.38□□□□□ -0.27
PTPRF-209ENST00000438120 IGHV3-30-3P0DP02 117 aa13.38□□□□□ -0.27
PTPRF-209ENST00000438120 IGHV3-30-5P0DP03 117 aa13.38□□□□□ -0.27
PTPRF-209ENST00000438120 KLF2Q9Y5W3 355 aaPredicted RBP13.38□□□□□ -0.27
PTPRF-209ENST00000438120 TRAV13-2A0A0B4J235 113 aa13.38□□□□□ -0.27
PTPRF-209ENST00000438120 WISP2O76076 250 aa13.38□□□□□ -0.27
PTPRF-209ENST00000438120 GYPEP15421 78 aa13.38□□□□□ -0.27
PTPRF-209ENST00000438120 Q8NFD4 153 aa13.38□□□□□ -0.27
PTPRF-209ENST00000438120 NPBQ8NG41 125 aa13.38□□□□□ -0.27
PTPRF-209ENST00000438120 MED13Q9UHV7 2174 aa13.37□□□□□ -0.27
PTPRF-209ENST00000438120 RPL18AQ02543 176 aaKnown RBP13.37□□□□□ -0.27
PTPRF-209ENST00000438120 IGHV4OR15-8A0A075B7B6 117 aa13.37□□□□□ -0.27
PTPRF-209ENST00000438120 A0A087WW49 117 aa13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms