RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 PRR20DP86480 221 aa5.76□□□□□ -1.49
VPS53-204ENST00000437048 PRR20BP86481 221 aa5.76□□□□□ -1.49
VPS53-204ENST00000437048 PRR20AP86496 221 aa5.76□□□□□ -1.49
VPS53-204ENST00000437048 NTN5Q8WTR8 489 aaPredicted RBP5.76□□□□□ -1.49
VPS53-204ENST00000437048 P0DMU3 169 aa5.76□□□□□ -1.49
VPS53-204ENST00000437048 FAM231AP0DMU4 169 aa5.76□□□□□ -1.49
VPS53-204ENST00000437048 FAM231CP0DMU5 169 aa5.76□□□□□ -1.49
VPS53-204ENST00000437048 C17orf82Q86X59 251 aaPredicted RBP5.76□□□□□ -1.49
VPS53-204ENST00000437048 TFF1P04155 84 aa5.76□□□□□ -1.49
VPS53-204ENST00000437048 ZNF524Q96C55 264 aa5.76□□□□□ -1.49
VPS53-204ENST00000437048 ZC2HC1AQ96GY0 325 aa5.76□□□□□ -1.49
VPS53-204ENST00000437048 UBE2E1P51965 193 aa5.76□□□□□ -1.49
VPS53-204ENST00000437048 SEC61GP60059 68 aa5.75□□□□□ -1.49
VPS53-204ENST00000437048 MAFAQ8NHW3 353 aaPredicted RBP5.75□□□□□ -1.49
VPS53-204ENST00000437048 TP73-AS1Q9UF72 201 aa5.75□□□□□ -1.49
VPS53-204ENST00000437048 DSCAMO60469 2012 aa5.75□□□□□ -1.49
VPS53-204ENST00000437048 TRGV1A0A0A0MS02 117 aa5.75□□□□□ -1.49
VPS53-204ENST00000437048 IGKV3OR2-268A0A0C4DH90 116 aa5.75□□□□□ -1.49
VPS53-204ENST00000437048 TIMM17BO60830 172 aa5.75□□□□□ -1.49
VPS53-204ENST00000437048 ASPHD1Q5U4P2 390 aa5.75□□□□□ -1.49
VPS53-204ENST00000437048 MCRIP2Q9BUT9 160 aaKnown RBP5.75□□□□□ -1.49
VPS53-204ENST00000437048 IGKV1-12A0A0C4DH73 117 aa5.75□□□□□ -1.49
VPS53-204ENST00000437048 LOC101059948A0A1B0GTJ6 334 aa5.75□□□□□ -1.49
VPS53-204ENST00000437048 M0QXV9 152 aa5.75□□□□□ -1.49
VPS53-204ENST00000437048 IGKV1D-12P01611 117 aa5.75□□□□□ -1.49
VPS53-204ENST00000437048 APOC4P55056 127 aa5.75□□□□□ -1.49
VPS53-204ENST00000437048 C3orf22Q8N5N4 141 aa5.75□□□□□ -1.49
VPS53-204ENST00000437048 MBD3L4A6NDZ8 208 aaPredicted RBP5.75□□□□□ -1.49
VPS53-204ENST00000437048 MBD3L3A6NE82 208 aaPredicted RBP5.75□□□□□ -1.49
VPS53-204ENST00000437048 MBD3L5A6NJ08 208 aaPredicted RBP5.75□□□□□ -1.49
VPS53-204ENST00000437048 CRIPAKQ8N1N5 446 aa5.75□□□□□ -1.49
VPS53-204ENST00000437048 MBD3L2Q8NHZ7 208 aaPredicted RBP5.75□□□□□ -1.49
VPS53-204ENST00000437048 IGKV2-40A0A087WW87 121 aaPredicted RBP5.75□□□□□ -1.49
VPS53-204ENST00000437048 IGKV2D-40P01614 121 aaPredicted RBP5.75□□□□□ -1.49
VPS53-204ENST00000437048 LOXL1Q08397 574 aaPredicted RBP5.75□□□□□ -1.49
VPS53-204ENST00000437048 PTH2Q96A98 100 aa5.75□□□□□ -1.49
VPS53-204ENST00000437048 HIGD2BQ4VC39 106 aa5.75□□□□□ -1.49
VPS53-204ENST00000437048 CYYR1Q96J86 154 aa5.75□□□□□ -1.49
VPS53-204ENST00000437048 IGKV1D-8A0A087WSZ0 117 aa5.74□□□□□ -1.49
VPS53-204ENST00000437048 MUSTN1Q8IVN3 82 aa5.74□□□□□ -1.49
VPS53-204ENST00000437048 PLA2G2FQ9BZM2 168 aa5.74□□□□□ -1.49
VPS53-204ENST00000437048 NDUFA7O95182 113 aa5.74□□□□□ -1.49
VPS53-204ENST00000437048 PRR30Q53SZ7 412 aaPredicted RBP5.74□□□□□ -1.49
VPS53-204ENST00000437048 GGNQ86UU5 652 aa5.74□□□□□ -1.49
VPS53-204ENST00000437048 LEAP2Q969E1 77 aa5.74□□□□□ -1.49
VPS53-204ENST00000437048 FXYD5Q96DB9 178 aa5.74□□□□□ -1.49
VPS53-204ENST00000437048 C7orf69Q9H7B7 122 aa5.74□□□□□ -1.49
VPS53-204ENST00000437048 PRSS29PA6NIE9 313 aa5.74□□□□□ -1.49
VPS53-204ENST00000437048 PLA2G5P39877 138 aa5.74□□□□□ -1.49
VPS53-204ENST00000437048 FAM236DA0A1B0GTK5 79 aa5.74□□□□□ -1.49
VPS53-204ENST00000437048 FAM236CP0DP71 79 aa5.74□□□□□ -1.49
VPS53-204ENST00000437048 TRAV3A0A0B4J244 114 aa5.74□□□□□ -1.49
VPS53-204ENST00000437048 TEX36Q5VZQ5 186 aa5.74□□□□□ -1.49
VPS53-204ENST00000437048 Q6ZSR3 168 aa5.74□□□□□ -1.49
VPS53-204ENST00000437048 IGKV1-27A0A075B6S5 117 aa5.74□□□□□ -1.49
VPS53-204ENST00000437048 CSRP1P21291 193 aaKnown RBP5.74□□□□□ -1.49
VPS53-204ENST00000437048 HIVEP2P31629 2446 aa5.74□□□□□ -1.49
VPS53-204ENST00000437048 SERP2Q8N6R1 65 aa5.74□□□□□ -1.49
VPS53-204ENST00000437048 WDR90Q96KV7 1748 aa5.73□□□□□ -1.49
VPS53-204ENST00000437048 NREPQ16612 68 aa5.73□□□□□ -1.49
VPS53-204ENST00000437048 FAM222AQ5U5X8 452 aa5.73□□□□□ -1.49
VPS53-204ENST00000437048 VOPP1Q96AW1 172 aa5.73□□□□□ -1.49
VPS53-204ENST00000437048 RHPN1-AS1Q9BWJ2 59 aa5.73□□□□□ -1.49
VPS53-204ENST00000437048 PRSS57Q6UWY2 283 aa5.73□□□□□ -1.49
VPS53-204ENST00000437048 IGLV3-1P01715 115 aa5.73□□□□□ -1.49
VPS53-204ENST00000437048 KIR2DL5BQ8NHK3 375 aa5.73□□□□□ -1.49
VPS53-204ENST00000437048 GTSF1Q8WW33 167 aa5.73□□□□□ -1.49
VPS53-204ENST00000437048 TRBV10-1A0A0K0K1A3 114 aa5.73□□□□□ -1.49
VPS53-204ENST00000437048 IGHV1-46P01743 117 aa5.73□□□□□ -1.49
VPS53-204ENST00000437048 DEFB124Q8NES8 71 aa5.73□□□□□ -1.49
VPS53-204ENST00000437048 CCDC140Q96MF4 163 aa5.73□□□□□ -1.49
VPS53-204ENST00000437048 IGKV1D-43A0A0B4J1Z2 117 aa5.73□□□□□ -1.49
VPS53-204ENST00000437048 LINC01565O15544 149 aa5.73□□□□□ -1.49
VPS53-204ENST00000437048 BMPERQ8N8U9 685 aa5.73□□□□□ -1.49
VPS53-204ENST00000437048 TMEM200BQ69YZ2 307 aa5.73□□□□□ -1.49
VPS53-204ENST00000437048 KIAA1549LQ6ZVL6 1849 aa5.73□□□□□ -1.49
VPS53-204ENST00000437048 LINC00473A8K010 186 aa5.73□□□□□ -1.49
VPS53-204ENST00000437048 DEFB123Q8N688 67 aa5.73□□□□□ -1.49
VPS53-204ENST00000437048 C1orf147Q96MC9 270 aaPredicted RBP5.73□□□□□ -1.49
VPS53-204ENST00000437048 ATG2AQ2TAZ0 1938 aa5.73□□□□□ -1.49
VPS53-204ENST00000437048 ODF3Q96PU9 254 aa5.72□□□□□ -1.49
VPS53-204ENST00000437048 ZNF71Q9NQZ8 489 aaPredicted RBP5.72□□□□□ -1.49
VPS53-204ENST00000437048 PROP1O75360 226 aa5.72□□□□□ -1.49
VPS53-204ENST00000437048 ELANEP08246 267 aa5.72□□□□□ -1.49
VPS53-204ENST00000437048 MORN5Q5VZ52 161 aa5.72□□□□□ -1.49
VPS53-204ENST00000437048 FLVCR1-AS1Q8TAF5 88 aa5.72□□□□□ -1.49
VPS53-204ENST00000437048 PSPNO60542 156 aa5.72□□□□□ -1.49
VPS53-204ENST00000437048 TOMM6Q96B49 74 aa5.72□□□□□ -1.49
VPS53-204ENST00000437048 RNF185Q96GF1 192 aa5.72□□□□□ -1.49
VPS53-204ENST00000437048 STPG1Q5TH74 334 aa5.72□□□□□ -1.49
VPS53-204ENST00000437048 FN1P02751 2386 aaKnown RBP5.72□□□□□ -1.49
VPS53-204ENST00000437048 BRWD3Q6RI45 1802 aa5.72□□□□□ -1.49
VPS53-204ENST00000437048 LGALS9O00182 355 aa5.71□□□□□ -1.49
VPS53-204ENST00000437048 IGHV1-18A0A0C4DH31 117 aa5.71□□□□□ -1.49
VPS53-204ENST00000437048 CSRP2Q16527 193 aa5.71□□□□□ -1.49
VPS53-204ENST00000437048 CHKB-CPT1BH3BT56 60 aa5.71□□□□□ -1.49
VPS53-204ENST00000437048 SS18L2Q9UHA2 77 aa5.71□□□□□ -1.49
VPS53-204ENST00000437048 LTBP1Q14766 1721 aa5.71□□□□□ -1.5
VPS53-204ENST00000437048 WIPF3A6NGB9 483 aa5.71□□□□□ -1.5
VPS53-204ENST00000437048 METRNQ9UJH8 293 aa5.71□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 60.4 ms