RNA–Protein interactions for RNA: ENST00000436346.5

CCDC88A-207, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC88A, Length 9,811 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-207ENST00000436346 HLA-DRB4X5D2U9 266 aa9.6□□□□□ -0.87
CCDC88A-207ENST00000436346 TRBV19A0A075B6N1 114 aa9.6□□□□□ -0.87
CCDC88A-207ENST00000436346 IGKV1OR2-108A0A075B7D4 117 aa9.6□□□□□ -0.87
CCDC88A-207ENST00000436346 IGHV4-59P01825 116 aa9.6□□□□□ -0.87
CCDC88A-207ENST00000436346 PRSS57Q6UWY2 283 aa9.6□□□□□ -0.87
CCDC88A-207ENST00000436346 COL4A3Q01955 1670 aa9.6□□□□□ -0.87
CCDC88A-207ENST00000436346 USP9YO00507 2555 aaPredicted RBP9.6□□□□□ -0.87
CCDC88A-207ENST00000436346 MMP23AO75900 390 aa9.6□□□□□ -0.87
CCDC88A-207ENST00000436346 STPG4Q8N801 248 aa9.59□□□□□ -0.87
CCDC88A-207ENST00000436346 LOC105371267A0A1B0GV96 52 aa9.59□□□□□ -0.87
CCDC88A-207ENST00000436346 C9JAW5 83 aa9.59□□□□□ -0.87
CCDC88A-207ENST00000436346 INAFM2P0DMQ5 153 aa9.59□□□□□ -0.87
CCDC88A-207ENST00000436346 IGLV3-9A0A075B6K5 115 aa9.59□□□□□ -0.87
CCDC88A-207ENST00000436346 GRNP28799 593 aaKnown RBP9.59□□□□□ -0.87
CCDC88A-207ENST00000436346 PIP4P1Q86T03 277 aa9.59□□□□□ -0.87
CCDC88A-207ENST00000436346 FAM215AQ9Y5M1 114 aa9.59□□□□□ -0.87
CCDC88A-207ENST00000436346 SHISA9B4DS77 424 aa9.59□□□□□ -0.87
CCDC88A-207ENST00000436346 CYYR1Q96J86 154 aa9.59□□□□□ -0.87
CCDC88A-207ENST00000436346 UBE2WQ96B02 151 aa9.58□□□□□ -0.88
CCDC88A-207ENST00000436346 PKIGQ9Y2B9 76 aa9.58□□□□□ -0.88
CCDC88A-207ENST00000436346 IGHV1-24A0A0C4DH33 117 aa9.58□□□□□ -0.88
CCDC88A-207ENST00000436346 WDR86Q86TI4 376 aa9.58□□□□□ -0.88
CCDC88A-207ENST00000436346 CITED2Q99967 270 aaPredicted RBP9.58□□□□□ -0.88
CCDC88A-207ENST00000436346 LOXP28300 417 aaPredicted RBP9.58□□□□□ -0.88
CCDC88A-207ENST00000436346 TCF15Q12870 199 aa9.58□□□□□ -0.88
CCDC88A-207ENST00000436346 MRPL27Q9P0M9 148 aaKnown RBP9.58□□□□□ -0.88
CCDC88A-207ENST00000436346 TRBV24-1A0A075B6N3 115 aa9.58□□□□□ -0.88
CCDC88A-207ENST00000436346 A0A0G2JRQ6 117 aa9.58□□□□□ -0.88
CCDC88A-207ENST00000436346 DEFB113Q30KQ7 82 aa9.58□□□□□ -0.88
CCDC88A-207ENST00000436346 A0A1B0GUS0 222 aa9.58□□□□□ -0.88
CCDC88A-207ENST00000436346 CFHR4Q92496 578 aa9.58□□□□□ -0.88
CCDC88A-207ENST00000436346 SLURP1P55000 103 aa9.58□□□□□ -0.88
CCDC88A-207ENST00000436346 Q6ZRM9 215 aa9.58□□□□□ -0.88
CCDC88A-207ENST00000436346 ZC2HC1AQ96GY0 325 aa9.58□□□□□ -0.88
CCDC88A-207ENST00000436346 IGKV1-6A0A0C4DH72 117 aa9.58□□□□□ -0.88
CCDC88A-207ENST00000436346 PRSS33Q8NF86 280 aa9.58□□□□□ -0.88
CCDC88A-207ENST00000436346 IGLV2-23P01705 113 aa9.57□□□□□ -0.88
CCDC88A-207ENST00000436346 FOXI2Q6ZQN5 318 aa9.57□□□□□ -0.88
CCDC88A-207ENST00000436346 SRSF2Q01130 221 aaKnown RBP9.57□□□□□ -0.88
CCDC88A-207ENST00000436346 CYTL1Q9NRR1 136 aa9.57□□□□□ -0.88
CCDC88A-207ENST00000436346 MRPL51Q4U2R6 128 aaKnown RBP9.57□□□□□ -0.88
CCDC88A-207ENST00000436346 H3BRN7 92 aa9.57□□□□□ -0.88
CCDC88A-207ENST00000436346 Q6ZR03 302 aa9.57□□□□□ -0.88
CCDC88A-207ENST00000436346 C9orf66Q5T8R8 295 aa9.57□□□□□ -0.88
CCDC88A-207ENST00000436346 MRPL53Q96EL3 112 aaKnown RBP9.56□□□□□ -0.88
CCDC88A-207ENST00000436346 SOCS3O14543 225 aa9.56□□□□□ -0.88
CCDC88A-207ENST00000436346 LMO1P25800 156 aa9.56□□□□□ -0.88
CCDC88A-207ENST00000436346 ASPHD1Q5U4P2 390 aa9.56□□□□□ -0.88
CCDC88A-207ENST00000436346 DEFB105AQ8NG35 78 aa9.56□□□□□ -0.88
CCDC88A-207ENST00000436346 HERVK_113P63121 156 aa9.56□□□□□ -0.88
CCDC88A-207ENST00000436346 C2orf66Q6UXQ4 117 aa9.56□□□□□ -0.88
CCDC88A-207ENST00000436346 ZNF503-AS2A6NEH8 195 aa9.56□□□□□ -0.88
CCDC88A-207ENST00000436346 CT83Q5H943 113 aa9.56□□□□□ -0.88
CCDC88A-207ENST00000436346 FOXL2NBQ6ZUU3 175 aa9.55□□□□□ -0.88
CCDC88A-207ENST00000436346 Q8N8P6 123 aa9.55□□□□□ -0.88
CCDC88A-207ENST00000436346 BPTFQ12830 3046 aa9.55□□□□□ -0.88
CCDC88A-207ENST00000436346 RHOHQ15669 191 aa9.55□□□□□ -0.88
CCDC88A-207ENST00000436346 IGHG4P01861 327 aa9.55□□□□□ -0.88
CCDC88A-207ENST00000436346 TMEM14CQ9P0S9 112 aa9.55□□□□□ -0.88
CCDC88A-207ENST00000436346 WT1-ASQ06250 92 aa9.55□□□□□ -0.88
CCDC88A-207ENST00000436346 DEFB112Q30KQ8 113 aa9.55□□□□□ -0.88
CCDC88A-207ENST00000436346 C1orf43Q9BWL3 253 aa9.55□□□□□ -0.88
CCDC88A-207ENST00000436346 TRAV12-1A0A0B4J245 112 aa9.55□□□□□ -0.88
CCDC88A-207ENST00000436346 IGHV4-4A0A075B6R2 117 aa9.54□□□□□ -0.88
CCDC88A-207ENST00000436346 ADAMTSL5Q6ZMM2 481 aa9.54□□□□□ -0.88
CCDC88A-207ENST00000436346 ELANEP08246 267 aa9.54□□□□□ -0.88
CCDC88A-207ENST00000436346 FAM104BQ5XKR9 115 aa9.54□□□□□ -0.88
CCDC88A-207ENST00000436346 PROK2Q9HC23 129 aa9.54□□□□□ -0.88
CCDC88A-207ENST00000436346 ZNF492Q9P255 531 aa9.54□□□□□ -0.88
CCDC88A-207ENST00000436346 C3orf79P0CE67 100 aa9.54□□□□□ -0.88
CCDC88A-207ENST00000436346 GYPEP15421 78 aa9.54□□□□□ -0.88
CCDC88A-207ENST00000436346 MORN5Q5VZ52 161 aa9.54□□□□□ -0.88
CCDC88A-207ENST00000436346 TRAV13-2A0A0B4J235 113 aa9.54□□□□□ -0.88
CCDC88A-207ENST00000436346 MPV17L2Q567V2 206 aa9.54□□□□□ -0.88
CCDC88A-207ENST00000436346 LYL1P12980 280 aa9.54□□□□□ -0.88
CCDC88A-207ENST00000436346 GP9P14770 177 aa9.54□□□□□ -0.88
CCDC88A-207ENST00000436346 DIAPH2-AS1Q14236 149 aa9.54□□□□□ -0.88
CCDC88A-207ENST00000436346 TIRAPP58753 221 aa9.54□□□□□ -0.88
CCDC88A-207ENST00000436346 FOXE3Q13461 319 aa9.54□□□□□ -0.88
CCDC88A-207ENST00000436346 IGFBPL1Q8WX77 278 aa9.54□□□□□ -0.88
CCDC88A-207ENST00000436346 TEX48A0A1B0GUV7 120 aa9.53□□□□□ -0.88
CCDC88A-207ENST00000436346 IGHV4-38-2P0DP08 117 aa9.53□□□□□ -0.88
CCDC88A-207ENST00000436346 SLAQ13239 276 aa9.53□□□□□ -0.88
CCDC88A-207ENST00000436346 APRG1Q8IVJ8 170 aa9.53□□□□□ -0.88
CCDC88A-207ENST00000436346 NRGNQ92686 78 aa9.53□□□□□ -0.88
CCDC88A-207ENST00000436346 COLCA2A8K830 154 aa9.53□□□□□ -0.88
CCDC88A-207ENST00000436346 F8W735 103 aaPredicted RBP9.53□□□□□ -0.88
CCDC88A-207ENST00000436346 IGLV1-44P01699 117 aa9.53□□□□□ -0.88
CCDC88A-207ENST00000436346 PRR25Q96S07 402 aa9.53□□□□□ -0.88
CCDC88A-207ENST00000436346 C15orf65H3BRN8 121 aa9.53□□□□□ -0.88
CCDC88A-207ENST00000436346 TAL2Q16559 108 aa9.53□□□□□ -0.88
CCDC88A-207ENST00000436346 NDUFA12Q9UI09 145 aa9.53□□□□□ -0.88
CCDC88A-207ENST00000436346 SMIM27A0A1W2PRY6 76 aa9.52□□□□□ -0.89
CCDC88A-207ENST00000436346 C16orf74Q96GX8 76 aa9.52□□□□□ -0.89
CCDC88A-207ENST00000436346 GTSF1LQ9H1H1 148 aa9.52□□□□□ -0.89
CCDC88A-207ENST00000436346 IGLV10-54A0A075B6I4 117 aa9.52□□□□□ -0.89
CCDC88A-207ENST00000436346 EGR2P11161 476 aaPredicted RBP9.52□□□□□ -0.89
CCDC88A-207ENST00000436346 H3BUA1 57 aa9.52□□□□□ -0.89
CCDC88A-207ENST00000436346 LINC00311Q8N616 119 aa9.51□□□□□ -0.89
CCDC88A-207ENST00000436346 MUC22E2RYF6 1773 aaPredicted RBP9.51□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 78.6 ms