RNA–Protein interactions for RNA: ENST00000435823.1

COL28A1-203, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL28A1, Length 678 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-203ENST00000435823 ARL2-SNX15V9GYD0 113 aa8.1□□□□□ -1.11
COL28A1-203ENST00000435823 SACSQ9NZJ4 4579 aa8.1□□□□□ -1.11
COL28A1-203ENST00000435823 DNAH1Q9P2D7 4330 aa8.09□□□□□ -1.11
COL28A1-203ENST00000435823 A0A1B0GV50 99 aa8.09□□□□□ -1.11
COL28A1-203ENST00000435823 RAB5CP51148 216 aa8.09□□□□□ -1.11
COL28A1-203ENST00000435823 SAPCD1Q5SSQ6 148 aa8.09□□□□□ -1.11
COL28A1-203ENST00000435823 CST9LP1Q5W188 147 aa8.09□□□□□ -1.11
COL28A1-203ENST00000435823 TMEM88Q6PEY1 159 aa8.09□□□□□ -1.11
COL28A1-203ENST00000435823 SLC51BQ86UW2 128 aa8.09□□□□□ -1.11
COL28A1-203ENST00000435823 TVP23CQ96ET8 276 aa8.09□□□□□ -1.11
COL28A1-203ENST00000435823 TP53TG3Q9ULZ0 132 aa8.09□□□□□ -1.11
COL28A1-203ENST00000435823 TRGV2A0A075B6R0 118 aa8.08□□□□□ -1.12
COL28A1-203ENST00000435823 TRGV1A0A0A0MS02 117 aa8.08□□□□□ -1.12
COL28A1-203ENST00000435823 IGLV2-11P01706 119 aa8.08□□□□□ -1.12
COL28A1-203ENST00000435823 P0DMU3 169 aa8.08□□□□□ -1.12
COL28A1-203ENST00000435823 FAM231AP0DMU4 169 aa8.08□□□□□ -1.12
COL28A1-203ENST00000435823 FAM231CP0DMU5 169 aa8.08□□□□□ -1.12
COL28A1-203ENST00000435823 TMEM183BQ1AE95 376 aa8.08□□□□□ -1.12
COL28A1-203ENST00000435823 SMUG1Q53HV7 270 aa8.08□□□□□ -1.12
COL28A1-203ENST00000435823 C4orf48Q5BLP8 95 aa8.08□□□□□ -1.12
COL28A1-203ENST00000435823 Q6ZTI0 123 aa8.08□□□□□ -1.12
COL28A1-203ENST00000435823 TMEM183AQ8IXX5 376 aa8.08□□□□□ -1.12
COL28A1-203ENST00000435823 C15orf53Q8NAA6 179 aa8.08□□□□□ -1.12
COL28A1-203ENST00000435823 KCNS1Q96KK3 526 aa8.08□□□□□ -1.12
COL28A1-203ENST00000435823 C8orf49Q96NF6 230 aa8.08□□□□□ -1.12
COL28A1-203ENST00000435823 SDF2L1Q9HCN8 221 aa8.08□□□□□ -1.12
COL28A1-203ENST00000435823 KLF12Q9Y4X4 402 aa8.08□□□□□ -1.12
COL28A1-203ENST00000435823 TRAV34A0A0B4J273 112 aa8.07□□□□□ -1.12
COL28A1-203ENST00000435823 TEX46H3BTG2 121 aa8.07□□□□□ -1.12
COL28A1-203ENST00000435823 SPINK4O60575 86 aa8.07□□□□□ -1.12
COL28A1-203ENST00000435823 PAGE4O60829 102 aa8.07□□□□□ -1.12
COL28A1-203ENST00000435823 GCGP01275 180 aa8.07□□□□□ -1.12
COL28A1-203ENST00000435823 UBE2G1P62253 170 aa8.07□□□□□ -1.12
COL28A1-203ENST00000435823 TDRG1Q3Y452 100 aa8.07□□□□□ -1.12
COL28A1-203ENST00000435823 LINC00479Q96M42 142 aa8.07□□□□□ -1.12
COL28A1-203ENST00000435823 PFN1P07737 140 aaKnown RBP8.06□□□□□ -1.12
COL28A1-203ENST00000435823 AKR1C3P42330 323 aa8.06□□□□□ -1.12
COL28A1-203ENST00000435823 SULT1A2P50226 295 aa8.06□□□□□ -1.12
COL28A1-203ENST00000435823 OR5I1Q13606 314 aa8.06□□□□□ -1.12
COL28A1-203ENST00000435823 LGALS9BQ3B8N2 356 aa8.06□□□□□ -1.12
COL28A1-203ENST00000435823 Q86TA4 180 aa8.06□□□□□ -1.12
COL28A1-203ENST00000435823 UBE2DNLQ8IWF7 75 aa8.06□□□□□ -1.12
COL28A1-203ENST00000435823 C9orf62Q8N4C0 152 aa8.06□□□□□ -1.12
COL28A1-203ENST00000435823 FMC1Q96HJ9 113 aa8.06□□□□□ -1.12
COL28A1-203ENST00000435823 C18orf15Q96N68 181 aa8.06□□□□□ -1.12
COL28A1-203ENST00000435823 SPXQ9BT56 116 aa8.06□□□□□ -1.12
COL28A1-203ENST00000435823 MRPL16Q9NX20 251 aaKnown RBP8.06□□□□□ -1.12
COL28A1-203ENST00000435823 MDFICQ9P1T7 246 aa8.06□□□□□ -1.12
COL28A1-203ENST00000435823 HYDINQ4G0P3 5121 aa8.05□□□□□ -1.12
COL28A1-203ENST00000435823 TYMSP04818 313 aa8.05□□□□□ -1.12
COL28A1-203ENST00000435823 ZNF80P51504 273 aaPredicted RBP8.05□□□□□ -1.12
COL28A1-203ENST00000435823 MANBALQ9NQG1 85 aa8.05□□□□□ -1.12
COL28A1-203ENST00000435823 ZFP30Q9Y2G7 519 aa8.05□□□□□ -1.12
COL28A1-203ENST00000435823 TRAV1-1A0A0B4J248 108 aa8.04□□□□□ -1.12
COL28A1-203ENST00000435823 IGHV3-16A0A0C4DH30 117 aa8.04□□□□□ -1.12
COL28A1-203ENST00000435823 A0A1B0GVG6 124 aa8.04□□□□□ -1.12
COL28A1-203ENST00000435823 GNRH2O43555 120 aa8.04□□□□□ -1.12
COL28A1-203ENST00000435823 NUDT3O95989 172 aa8.04□□□□□ -1.12
COL28A1-203ENST00000435823 S100A9P06702 114 aaKnown RBP8.04□□□□□ -1.12
COL28A1-203ENST00000435823 POM121L12Q8N7R1 296 aa8.04□□□□□ -1.12
COL28A1-203ENST00000435823 GNG13Q9P2W3 67 aa8.04□□□□□ -1.12
COL28A1-203ENST00000435823 TRAV26-1A0A087WT03 109 aa8.03□□□□□ -1.12
COL28A1-203ENST00000435823 TRBV6-1A0A0K0K1D8 114 aa8.03□□□□□ -1.12
COL28A1-203ENST00000435823 FABP5P3A8MUU1 101 aa8.03□□□□□ -1.12
COL28A1-203ENST00000435823 IFNA1P01562 189 aa8.03□□□□□ -1.12
COL28A1-203ENST00000435823 HOXA5P20719 270 aa8.03□□□□□ -1.12
COL28A1-203ENST00000435823 LCE1DQ5T752 114 aa8.03□□□□□ -1.12
COL28A1-203ENST00000435823 A0A0J9YY99 117 aa8.02□□□□□ -1.13
COL28A1-203ENST00000435823 M0R2P5 195 aa8.02□□□□□ -1.13
COL28A1-203ENST00000435823 CCL20P78556 96 aa8.02□□□□□ -1.13
COL28A1-203ENST00000435823 RNF212Q495C1 297 aa8.02□□□□□ -1.13
COL28A1-203ENST00000435823 RASL10AQ92737 203 aa8.02□□□□□ -1.13
COL28A1-203ENST00000435823 TXNDC17Q9BRA2 123 aa8.02□□□□□ -1.13
COL28A1-203ENST00000435823 C11orf21Q9P2W6 132 aa8.02□□□□□ -1.13
COL28A1-203ENST00000435823 H3BNG1 76 aa8.01□□□□□ -1.13
COL28A1-203ENST00000435823 LTAP01374 205 aa8.01□□□□□ -1.13
COL28A1-203ENST00000435823 IGHV3-53P01767 116 aa8.01□□□□□ -1.13
COL28A1-203ENST00000435823 S100A4P26447 101 aaKnown RBP8.01□□□□□ -1.13
COL28A1-203ENST00000435823 SLAQ13239 276 aa8.01□□□□□ -1.13
COL28A1-203ENST00000435823 FAM162BQ5T6X4 162 aa8.01□□□□□ -1.13
COL28A1-203ENST00000435823 COX8CQ7Z4L0 72 aa8.01□□□□□ -1.13
COL28A1-203ENST00000435823 VPS13DQ5THJ4 4388 aa8.01□□□□□ -1.13
COL28A1-203ENST00000435823 TRGV4A0A0C4DH28 118 aa8□□□□□ -1.13
COL28A1-203ENST00000435823 ORM1P02763 201 aa8□□□□□ -1.13
COL28A1-203ENST00000435823 ASIPP42127 132 aa8□□□□□ -1.13
COL28A1-203ENST00000435823 NKX2-5P52952 324 aaPredicted RBP8□□□□□ -1.13
COL28A1-203ENST00000435823 CCL18P55774 89 aa8□□□□□ -1.13
COL28A1-203ENST00000435823 FAM3BP58499 235 aaPredicted RBP8□□□□□ -1.13
COL28A1-203ENST00000435823 ALKAL2Q6UX46 152 aa8□□□□□ -1.13
COL28A1-203ENST00000435823 ZC2HC1AQ96GY0 325 aa8□□□□□ -1.13
COL28A1-203ENST00000435823 PRO0255Q9UI72 69 aa8□□□□□ -1.13
COL28A1-203ENST00000435823 TRAV4A0A0B4J268 109 aa7.99□□□□□ -1.13
COL28A1-203ENST00000435823 IGKV3D-20A0A0C4DH25 116 aa7.99□□□□□ -1.13
COL28A1-203ENST00000435823 B4DEV8 164 aa7.99□□□□□ -1.13
COL28A1-203ENST00000435823 C9JCJ5 164 aa7.99□□□□□ -1.13
COL28A1-203ENST00000435823 PAX4O43316 350 aa7.99□□□□□ -1.13
COL28A1-203ENST00000435823 SH2D1AO60880 128 aa7.99□□□□□ -1.13
COL28A1-203ENST00000435823 TAGLN2P37802 199 aaKnown RBP7.99□□□□□ -1.13
COL28A1-203ENST00000435823 CRIP1P50238 77 aa7.99□□□□□ -1.13
COL28A1-203ENST00000435823 BLOC1S1P78537 153 aa7.99□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms