RNA–Protein interactions for RNA: ENST00000430104.5

SHH-202, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 677 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-202ENST00000430104 AKR1C3P42330 323 aa13.15□□□□□ -0.3
SHH-202ENST00000430104 OR5I1Q13606 314 aa13.15□□□□□ -0.3
SHH-202ENST00000430104 FAM210BQ96KR6 192 aa13.15□□□□□ -0.3
SHH-202ENST00000430104 BOLA1Q9Y3E2 137 aa13.15□□□□□ -0.3
SHH-202ENST00000430104 ALMS1Q8TCU4 4167 aa13.15□□□□□ -0.3
SHH-202ENST00000430104 LYSTQ99698 3801 aa13.14□□□□□ -0.31
SHH-202ENST00000430104 SPINK4O60575 86 aa13.14□□□□□ -0.31
SHH-202ENST00000430104 ALKAL2Q6UX46 152 aa13.14□□□□□ -0.31
SHH-202ENST00000430104 FMC1Q96HJ9 113 aa13.14□□□□□ -0.31
SHH-202ENST00000430104 SDF2L1Q9HCN8 221 aa13.14□□□□□ -0.31
SHH-202ENST00000430104 TRAV1-1A0A0B4J248 108 aa13.13□□□□□ -0.31
SHH-202ENST00000430104 SCO2A0A1W2PP80 73 aa13.13□□□□□ -0.31
SHH-202ENST00000430104 TYMSP04818 313 aa13.13□□□□□ -0.31
SHH-202ENST00000430104 PFN1P07737 140 aaKnown RBP13.13□□□□□ -0.31
SHH-202ENST00000430104 TDRG1Q3Y452 100 aa13.13□□□□□ -0.31
SHH-202ENST00000430104 KCNS1Q96KK3 526 aa13.13□□□□□ -0.31
SHH-202ENST00000430104 TCEAL7Q9BRU2 100 aa13.13□□□□□ -0.31
SHH-202ENST00000430104 C11orf21Q9P2W6 132 aa13.13□□□□□ -0.31
SHH-202ENST00000430104 SACSQ9NZJ4 4579 aa13.12□□□□□ -0.31
SHH-202ENST00000430104 MANBALQ9NQG1 85 aa13.12□□□□□ -0.31
SHH-202ENST00000430104 RYR3Q15413 4870 aa13.12□□□□□ -0.31
SHH-202ENST00000430104 IGHV3-16A0A0C4DH30 117 aa13.11□□□□□ -0.31
SHH-202ENST00000430104 NUDT3O95989 172 aa13.11□□□□□ -0.31
SHH-202ENST00000430104 IGHV3-53P01767 116 aa13.11□□□□□ -0.31
SHH-202ENST00000430104 HOXA5P20719 270 aa13.11□□□□□ -0.31
SHH-202ENST00000430104 ZFP30Q9Y2G7 519 aa13.11□□□□□ -0.31
SHH-202ENST00000430104 A0A0J9YY99 117 aa13.1□□□□□ -0.31
SHH-202ENST00000430104 FABP5P3A8MUU1 101 aa13.1□□□□□ -0.31
SHH-202ENST00000430104 LGALS9BQ3B8N2 356 aa13.1□□□□□ -0.31
SHH-202ENST00000430104 NHLRC2Q8NBF2 726 aa13.1□□□□□ -0.31
SHH-202ENST00000430104 ZC2HC1AQ96GY0 325 aa13.1□□□□□ -0.31
SHH-202ENST00000430104 SPXQ9BT56 116 aa13.1□□□□□ -0.31
SHH-202ENST00000430104 RYR2Q92736 4967 aa13.1□□□□□ -0.31
SHH-202ENST00000430104 C15orf53Q8NAA6 179 aa13.09□□□□□ -0.31
SHH-202ENST00000430104 DNAH1Q9P2D7 4330 aa13.08□□□□□ -0.32
SHH-202ENST00000430104 TRAV26-1A0A087WT03 109 aa13.08□□□□□ -0.32
SHH-202ENST00000430104 TRBV6-1A0A0K0K1D8 114 aa13.08□□□□□ -0.32
SHH-202ENST00000430104 LTAP01374 205 aa13.08□□□□□ -0.32
SHH-202ENST00000430104 IFNA1P01562 189 aa13.08□□□□□ -0.32
SHH-202ENST00000430104 ORM1P02763 201 aa13.08□□□□□ -0.32
SHH-202ENST00000430104 P0DMU3 169 aa13.08□□□□□ -0.32
SHH-202ENST00000430104 FAM231AP0DMU4 169 aa13.08□□□□□ -0.32
SHH-202ENST00000430104 FAM231CP0DMU5 169 aa13.08□□□□□ -0.32
SHH-202ENST00000430104 CRIP1P50238 77 aa13.08□□□□□ -0.32
SHH-202ENST00000430104 UBE2DNLQ8IWF7 75 aa13.08□□□□□ -0.32
SHH-202ENST00000430104 S100A9P06702 114 aaKnown RBP13.07□□□□□ -0.32
SHH-202ENST00000430104 HYDINQ4G0P3 5121 aa13.07□□□□□ -0.32
SHH-202ENST00000430104 IGKV3D-20A0A0C4DH25 116 aa13.06□□□□□ -0.32
SHH-202ENST00000430104 C9JCJ5 164 aa13.06□□□□□ -0.32
SHH-202ENST00000430104 M0R036 132 aa13.06□□□□□ -0.32
SHH-202ENST00000430104 M0R2P5 195 aa13.06□□□□□ -0.32
SHH-202ENST00000430104 SH2D1AO60880 128 aa13.06□□□□□ -0.32
SHH-202ENST00000430104 BAGE2Q86Y30 109 aa13.06□□□□□ -0.32
SHH-202ENST00000430104 C18orf15Q96N68 181 aa13.06□□□□□ -0.32
SHH-202ENST00000430104 B4DEV8 164 aa13.05□□□□□ -0.32
SHH-202ENST00000430104 SFTA3P0C7M3 94 aa13.05□□□□□ -0.32
SHH-202ENST00000430104 BLOC1S1P78537 153 aa13.05□□□□□ -0.32
SHH-202ENST00000430104 FAM162BQ5T6X4 162 aa13.05□□□□□ -0.32
SHH-202ENST00000430104 RASL10AQ92737 203 aa13.05□□□□□ -0.32
SHH-202ENST00000430104 DERL1Q9BUN8 251 aa13.05□□□□□ -0.32
SHH-202ENST00000430104 TMSB15BA0A087X1C1 80 aa13.04□□□□□ -0.32
SHH-202ENST00000430104 BCL2P10415 239 aa13.04□□□□□ -0.32
SHH-202ENST00000430104 S100A4P26447 101 aaKnown RBP13.04□□□□□ -0.32
SHH-202ENST00000430104 RPL35P42766 123 aaKnown RBP13.04□□□□□ -0.32
SHH-202ENST00000430104 MEF2BQ02080 365 aaPredicted RBP13.04□□□□□ -0.32
SHH-202ENST00000430104 COX8CQ7Z4L0 72 aa13.04□□□□□ -0.32
SHH-202ENST00000430104 POM121L12Q8N7R1 296 aa13.04□□□□□ -0.32
SHH-202ENST00000430104 TXNDC17Q9BRA2 123 aa13.04□□□□□ -0.32
SHH-202ENST00000430104 NACAE9PAV3 2078 aa13.03□□□□□ -0.32
SHH-202ENST00000430104 MUC4Q99102 2169 aa13.03□□□□□ -0.32
SHH-202ENST00000430104 TRGV4A0A0C4DH28 118 aa13.03□□□□□ -0.32
SHH-202ENST00000430104 GRIFINA4D1Z8 144 aa13.03□□□□□ -0.32
SHH-202ENST00000430104 RNASE3P12724 160 aaKnown RBP13.03□□□□□ -0.32
SHH-202ENST00000430104 ASIPP42127 132 aa13.03□□□□□ -0.32
SHH-202ENST00000430104 ZNF674Q2M3X9 581 aa13.03□□□□□ -0.32
SHH-202ENST00000430104 C11orf52Q96A22 123 aa13.03□□□□□ -0.32
SHH-202ENST00000430104 ZNF479Q96JC4 524 aa13.03□□□□□ -0.32
SHH-202ENST00000430104 MED9Q9NWA0 146 aa13.03□□□□□ -0.32
SHH-202ENST00000430104 VAX2Q9UIW0 290 aa13.03□□□□□ -0.32
SHH-202ENST00000430104 KRBOX1C9JBD0 128 aa13.02□□□□□ -0.33
SHH-202ENST00000430104 FHL2Q14192 279 aa13.02□□□□□ -0.33
SHH-202ENST00000430104 ZNF876PQ49A33 203 aa13.02□□□□□ -0.33
SHH-202ENST00000430104 PRR27Q6MZM9 219 aa13.02□□□□□ -0.33
SHH-202ENST00000430104 OR4C5Q8NGB2 326 aa13.02□□□□□ -0.33
SHH-202ENST00000430104 VSIG2Q96IQ7 327 aa13.02□□□□□ -0.33
SHH-202ENST00000430104 C9orf85Q96MD7 179 aa13.02□□□□□ -0.33
SHH-202ENST00000430104 RAB19A4D1S5 217 aa13.01□□□□□ -0.33
SHH-202ENST00000430104 PGPEP1LA6NFU8 196 aa13.01□□□□□ -0.33
SHH-202ENST00000430104 PAX4O43316 350 aa13.01□□□□□ -0.33
SHH-202ENST00000430104 PDE6DO43924 150 aa13.01□□□□□ -0.33
SHH-202ENST00000430104 HHLA3Q9XRX5 114 aa13.01□□□□□ -0.33
SHH-202ENST00000430104 TRAV4A0A0B4J268 109 aa13□□□□□ -0.33
SHH-202ENST00000430104 H3BVH4 76 aa13□□□□□ -0.33
SHH-202ENST00000430104 CENPWQ5EE01 88 aa13□□□□□ -0.33
SHH-202ENST00000430104 MLST8Q9BVC4 326 aa13□□□□□ -0.33
SHH-202ENST00000430104 MGST1P10620 155 aaKnown RBP12.99□□□□□ -0.33
SHH-202ENST00000430104 CRYBA4P53673 196 aa12.99□□□□□ -0.33
SHH-202ENST00000430104 RNF212Q495C1 297 aa12.99□□□□□ -0.33
SHH-202ENST00000430104 ZNF506Q5JVG8 444 aa12.99□□□□□ -0.33
SHH-202ENST00000430104 PRO0255Q9UI72 69 aa12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms