RNA–Protein interactions for RNA: ENST00000422797.5

LIMS1-207, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best)

Gene LIMS1, Length 1,544 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-207ENST00000422797 SPANXB1Q9NS25 103 aaPredicted RBP8.44□□□□□ -1.06
LIMS1-207ENST00000422797 GAS8-AS1O95177 125 aa8.43□□□□□ -1.06
LIMS1-207ENST00000422797 PPIFP30405 207 aaKnown RBP8.43□□□□□ -1.06
LIMS1-207ENST00000422797 HERVK_113P61574 105 aa8.43□□□□□ -1.06
LIMS1-207ENST00000422797 GAGE13Q4V321 117 aa8.43□□□□□ -1.06
LIMS1-207ENST00000422797 PRR30Q53SZ7 412 aaPredicted RBP8.43□□□□□ -1.06
LIMS1-207ENST00000422797 CLEC19AQ6UXS0 136 aa8.43□□□□□ -1.06
LIMS1-207ENST00000422797 NEXN-AS1Q8NBZ9 246 aa8.43□□□□□ -1.06
LIMS1-207ENST00000422797 GLMPQ8WWB7 406 aa8.43□□□□□ -1.06
LIMS1-207ENST00000422797 ITLN2Q8WWU7 325 aaPredicted RBP8.43□□□□□ -1.06
LIMS1-207ENST00000422797 SPATA25Q9BR10 227 aa8.43□□□□□ -1.06
LIMS1-207ENST00000422797 H3BUA1 57 aa8.42□□□□□ -1.06
LIMS1-207ENST00000422797 H3BVH4 76 aa8.42□□□□□ -1.06
LIMS1-207ENST00000422797 K7ERJ3 54 aa8.42□□□□□ -1.06
LIMS1-207ENST00000422797 NDUFS8O00217 210 aa8.42□□□□□ -1.06
LIMS1-207ENST00000422797 PRB4P10163 310 aaPredicted RBP8.42□□□□□ -1.06
LIMS1-207ENST00000422797 POM121L12Q8N7R1 296 aa8.42□□□□□ -1.06
LIMS1-207ENST00000422797 VCX2Q9H322 139 aa8.42□□□□□ -1.06
LIMS1-207ENST00000422797 RAXQ9Y2V3 346 aa8.42□□□□□ -1.06
LIMS1-207ENST00000422797 FRYQ5TBA9 3013 aa8.42□□□□□ -1.06
LIMS1-207ENST00000422797 FASNP49327 2511 aaKnown RBP8.42□□□□□ -1.06
LIMS1-207ENST00000422797 NDUFA4O00483 81 aa8.41□□□□□ -1.06
LIMS1-207ENST00000422797 CCL21O00585 134 aa8.41□□□□□ -1.06
LIMS1-207ENST00000422797 HOXA3O43365 443 aaPredicted RBP8.41□□□□□ -1.06
LIMS1-207ENST00000422797 S100A4P26447 101 aaKnown RBP8.41□□□□□ -1.06
LIMS1-207ENST00000422797 SCGB2A2Q13296 93 aa8.41□□□□□ -1.06
LIMS1-207ENST00000422797 APRG1Q8IVJ8 170 aa8.41□□□□□ -1.06
LIMS1-207ENST00000422797 MAPKAPK5-AS1Q8N8E1 139 aa8.41□□□□□ -1.06
LIMS1-207ENST00000422797 SPOCK3Q9BQ16 436 aa8.41□□□□□ -1.06
LIMS1-207ENST00000422797 MOB4Q9Y3A3 225 aa8.41□□□□□ -1.06
LIMS1-207ENST00000422797 NXPH4O95158 308 aa8.4□□□□□ -1.06
LIMS1-207ENST00000422797 LCNL1Q6ZST4 164 aa8.4□□□□□ -1.06
LIMS1-207ENST00000422797 TTTY13Q9BZ97 58 aa8.4□□□□□ -1.06
LIMS1-207ENST00000422797 PHLDA3Q9Y5J5 127 aa8.4□□□□□ -1.06
LIMS1-207ENST00000422797 ANKRD11Q6UB99 2663 aaPredicted RBP8.4□□□□□ -1.06
LIMS1-207ENST00000422797 GAGE12HA6NDE8 117 aa8.39□□□□□ -1.07
LIMS1-207ENST00000422797 UCNP55089 124 aa8.39□□□□□ -1.07
LIMS1-207ENST00000422797 C2orf66Q6UXQ4 117 aa8.39□□□□□ -1.07
LIMS1-207ENST00000422797 C5orf56Q8N8D9 126 aa8.39□□□□□ -1.07
LIMS1-207ENST00000422797 RASL10AQ92737 203 aa8.39□□□□□ -1.07
LIMS1-207ENST00000422797 DLX4Q92988 240 aaPredicted RBP8.39□□□□□ -1.07
LIMS1-207ENST00000422797 TMEM141Q96I45 108 aa8.39□□□□□ -1.07
LIMS1-207ENST00000422797 TRAV26-2A0A0B4J265 109 aa8.39□□□□□ -1.07
LIMS1-207ENST00000422797 TRAV41A0A0B4J266 112 aa8.39□□□□□ -1.07
LIMS1-207ENST00000422797 IGHV3-35A0A0C4DH35 117 aa8.39□□□□□ -1.07
LIMS1-207ENST00000422797 A0A1B0GV72 72 aa8.39□□□□□ -1.07
LIMS1-207ENST00000422797 NPFFO15130 113 aa8.39□□□□□ -1.07
LIMS1-207ENST00000422797 LGALS1P09382 135 aaKnown RBP8.39□□□□□ -1.07
LIMS1-207ENST00000422797 ZFP36P26651 326 aaKnown RBP8.39□□□□□ -1.07
LIMS1-207ENST00000422797 SAA4P35542 130 aa8.39□□□□□ -1.07
LIMS1-207ENST00000422797 EFNA4P52798 201 aa8.39□□□□□ -1.07
LIMS1-207ENST00000422797 C19orf54Q5BKX5 351 aa8.39□□□□□ -1.07
LIMS1-207ENST00000422797 ZFAND2AQ8N6M9 145 aa8.39□□□□□ -1.07
LIMS1-207ENST00000422797 BAALCQ8WXS3 180 aa8.39□□□□□ -1.07
LIMS1-207ENST00000422797 USMG5Q96IX5 58 aa8.39□□□□□ -1.07
LIMS1-207ENST00000422797 FAM19A4Q96LR4 140 aa8.39□□□□□ -1.07
LIMS1-207ENST00000422797 CYSLTR1Q9Y271 337 aa8.39□□□□□ -1.07
LIMS1-207ENST00000422797 IGHV4OR15-8A0A075B7B6 117 aa8.38□□□□□ -1.07
LIMS1-207ENST00000422797 IGHV3OR16-8A0A075B7F1 116 aa8.38□□□□□ -1.07
LIMS1-207ENST00000422797 A0A087WW49 117 aa8.38□□□□□ -1.07
LIMS1-207ENST00000422797 H3BMG7 143 aa8.38□□□□□ -1.07
LIMS1-207ENST00000422797 LY6HO94772 140 aa8.38□□□□□ -1.07
LIMS1-207ENST00000422797 ARL3P36405 182 aa8.38□□□□□ -1.07
LIMS1-207ENST00000422797 MTURNQ8N3F0 131 aa8.38□□□□□ -1.07
LIMS1-207ENST00000422797 AJUBAQ96IF1 538 aa8.38□□□□□ -1.07
LIMS1-207ENST00000422797 PRADC1Q9BSG0 188 aa8.38□□□□□ -1.07
LIMS1-207ENST00000422797 PRO0461Q9UI25 63 aa8.38□□□□□ -1.07
LIMS1-207ENST00000422797 PKDREJQ9NTG1 2253 aa8.37□□□□□ -1.07
LIMS1-207ENST00000422797 TRBV20-1A0A075B6N2 111 aa8.37□□□□□ -1.07
LIMS1-207ENST00000422797 IGHV3-66A0A0C4DH42 116 aa8.37□□□□□ -1.07
LIMS1-207ENST00000422797 ZNF815PA8K554 130 aa8.37□□□□□ -1.07
LIMS1-207ENST00000422797 SOCS3O14543 225 aa8.37□□□□□ -1.07
LIMS1-207ENST00000422797 AZU1P20160 251 aa8.37□□□□□ -1.07
LIMS1-207ENST00000422797 GRNP28799 593 aaKnown RBP8.37□□□□□ -1.07
LIMS1-207ENST00000422797 UBE2D1P51668 147 aa8.37□□□□□ -1.07
LIMS1-207ENST00000422797 KLRB1Q12918 225 aa8.37□□□□□ -1.07
LIMS1-207ENST00000422797 WFDC2Q14508 124 aa8.37□□□□□ -1.07
LIMS1-207ENST00000422797 TIMM17AQ99595 171 aa8.37□□□□□ -1.07
LIMS1-207ENST00000422797 TSSC4Q9Y5U2 329 aaPredicted RBP8.37□□□□□ -1.07
LIMS1-207ENST00000422797 PRRC2CQ9Y520 2896 aaKnown RBP8.37□□□□□ -1.07
LIMS1-207ENST00000422797 ABCA1O95477 2261 aa8.36□□□□□ -1.07
LIMS1-207ENST00000422797 PRSS29PA6NIE9 313 aa8.36□□□□□ -1.07
LIMS1-207ENST00000422797 ADORA2A-AS1P86434 159 aa8.36□□□□□ -1.07
LIMS1-207ENST00000422797 TCTEX1D4Q5JR98 221 aa8.36□□□□□ -1.07
LIMS1-207ENST00000422797 SCGB1D4Q6XE38 83 aa8.36□□□□□ -1.07
LIMS1-207ENST00000422797 C1QTNF4Q9BXJ3 329 aa8.36□□□□□ -1.07
LIMS1-207ENST00000422797 MRPL16Q9NX20 251 aaKnown RBP8.36□□□□□ -1.07
LIMS1-207ENST00000422797 NBEAQ8NFP9 2946 aa8.36□□□□□ -1.07
LIMS1-207ENST00000422797 G3V318 75 aa8.35□□□□□ -1.07
LIMS1-207ENST00000422797 VCYO14598 125 aa8.35□□□□□ -1.07
LIMS1-207ENST00000422797 IGF1P05019 195 aa8.35□□□□□ -1.07
LIMS1-207ENST00000422797 MGPP08493 103 aa8.35□□□□□ -1.07
LIMS1-207ENST00000422797 COX6B1P14854 86 aa8.35□□□□□ -1.07
LIMS1-207ENST00000422797 PMVKQ15126 192 aa8.35□□□□□ -1.07
LIMS1-207ENST00000422797 PRR9Q5T870 116 aa8.35□□□□□ -1.07
LIMS1-207ENST00000422797 PGPEP1Q9NXJ5 209 aa8.35□□□□□ -1.07
LIMS1-207ENST00000422797 RP1L1Q8IWN7 2480 aaPredicted RBP8.35□□□□□ -1.07
LIMS1-207ENST00000422797 DSPP15924 2871 aaKnown RBP8.35□□□□□ -1.07
LIMS1-207ENST00000422797 ROS1P08922 2347 aa8.34□□□□□ -1.07
LIMS1-207ENST00000422797 C11orf86A6NJI1 115 aa8.34□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 53.1 ms