RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 XCL2Q9UBD3 114 aa12.6□□□□□ -0.39
CCDC28B-202ENST00000421922 HIGD1CA8MV81 97 aa12.59□□□□□ -0.39
CCDC28B-202ENST00000421922 GZMBP10144 247 aa12.59□□□□□ -0.39
CCDC28B-202ENST00000421922 S100A4P26447 101 aaKnown RBP12.59□□□□□ -0.39
CCDC28B-202ENST00000421922 ELOBQ15370 118 aa12.59□□□□□ -0.39
CCDC28B-202ENST00000421922 C20orf144Q9BQM9 153 aa12.59□□□□□ -0.39
CCDC28B-202ENST00000421922 GRIFINA4D1Z8 144 aa12.58□□□□□ -0.4
CCDC28B-202ENST00000421922 EGFEM1PQ0D2K5 195 aa12.58□□□□□ -0.4
CCDC28B-202ENST00000421922 ANXA2RQ3ZCQ2 193 aa12.58□□□□□ -0.4
CCDC28B-202ENST00000421922 IGHV1OR15-1A0A075B7D0 117 aa12.57□□□□□ -0.4
CCDC28B-202ENST00000421922 LOC102724200A0A096LPH7 203 aaPredicted RBP12.57□□□□□ -0.4
CCDC28B-202ENST00000421922 G3V4G9 280 aa12.57□□□□□ -0.4
CCDC28B-202ENST00000421922 CXCL1P09341 107 aa12.57□□□□□ -0.4
CCDC28B-202ENST00000421922 ASIPP42127 132 aa12.57□□□□□ -0.4
CCDC28B-202ENST00000421922 Q6ZQT7 251 aa12.57□□□□□ -0.4
CCDC28B-202ENST00000421922 FER1L6-AS1Q8NA97 138 aa12.57□□□□□ -0.4
CCDC28B-202ENST00000421922 PGLYRP4Q96LB8 373 aa12.57□□□□□ -0.4
CCDC28B-202ENST00000421922 C11orf21Q9P2W6 132 aa12.57□□□□□ -0.4
CCDC28B-202ENST00000421922 TGIF2-C20orf24A0A0A6YYL0 155 aa12.56□□□□□ -0.4
CCDC28B-202ENST00000421922 IGKV3D-20A0A0C4DH25 116 aa12.56□□□□□ -0.4
CCDC28B-202ENST00000421922 CRXO43186 299 aaPredicted RBP12.56□□□□□ -0.4
CCDC28B-202ENST00000421922 ZNF324O75467 553 aaPredicted RBP12.56□□□□□ -0.4
CCDC28B-202ENST00000421922 Q8N1Y9 231 aa12.56□□□□□ -0.4
CCDC28B-202ENST00000421922 TMEM256Q8N2U0 113 aa12.56□□□□□ -0.4
CCDC28B-202ENST00000421922 NUP35Q8NFH5 326 aa12.56□□□□□ -0.4
CCDC28B-202ENST00000421922 FAM210BQ96KR6 192 aa12.56□□□□□ -0.4
CCDC28B-202ENST00000421922 LINC01587Q99440 93 aa12.56□□□□□ -0.4
CCDC28B-202ENST00000421922 GOLT1BQ9Y3E0 138 aa12.56□□□□□ -0.4
CCDC28B-202ENST00000421922 MEGF8Q7Z7M0 2845 aa12.55□□□□□ -0.4
CCDC28B-202ENST00000421922 TRGV11A0A075B6L2 103 aa12.55□□□□□ -0.4
CCDC28B-202ENST00000421922 TRBV24-1A0A075B6N3 115 aa12.55□□□□□ -0.4
CCDC28B-202ENST00000421922 SPINK4O60575 86 aa12.55□□□□□ -0.4
CCDC28B-202ENST00000421922 APOC4P55056 127 aa12.55□□□□□ -0.4
CCDC28B-202ENST00000421922 SAMD5Q5TGI4 173 aa12.55□□□□□ -0.4
CCDC28B-202ENST00000421922 GTSF1Q8WW33 167 aa12.55□□□□□ -0.4
CCDC28B-202ENST00000421922 PYGO2Q9BRQ0 406 aa12.55□□□□□ -0.4
CCDC28B-202ENST00000421922 CSTL1Q9H114 145 aa12.55□□□□□ -0.4
CCDC28B-202ENST00000421922 IGHV3OR16-12A0A075B7B8 117 aa12.54□□□□□ -0.4
CCDC28B-202ENST00000421922 CBY3A6NI87 242 aa12.54□□□□□ -0.4
CCDC28B-202ENST00000421922 HTN1P15515 57 aa12.54□□□□□ -0.4
CCDC28B-202ENST00000421922 KRTAP10-11P60412 298 aa12.54□□□□□ -0.4
CCDC28B-202ENST00000421922 MRPL54Q6P161 138 aaKnown RBP12.54□□□□□ -0.4
CCDC28B-202ENST00000421922 TIMM8BQ9Y5J9 83 aaPredicted RBP12.54□□□□□ -0.4
CCDC28B-202ENST00000421922 TRRAPQ9Y4A5 3859 aa12.54□□□□□ -0.4
CCDC28B-202ENST00000421922 F2Z2F3 143 aa12.54□□□□□ -0.4
CCDC28B-202ENST00000421922 H3BVH4 76 aa12.54□□□□□ -0.4
CCDC28B-202ENST00000421922 TYMSP04818 313 aa12.54□□□□□ -0.4
CCDC28B-202ENST00000421922 ATP5L2Q7Z4Y8 100 aa12.54□□□□□ -0.4
CCDC28B-202ENST00000421922 A0A1B0GUT8 65 aa12.53□□□□□ -0.4
CCDC28B-202ENST00000421922 COLCA2A8K830 154 aa12.53□□□□□ -0.4
CCDC28B-202ENST00000421922 RIGQ13278 110 aa12.53□□□□□ -0.4
CCDC28B-202ENST00000421922 TDRG1Q3Y452 100 aa12.53□□□□□ -0.4
CCDC28B-202ENST00000421922 LYZL1Q6UWQ5 148 aa12.53□□□□□ -0.4
CCDC28B-202ENST00000421922 YPEL4Q96NS1 127 aa12.53□□□□□ -0.4
CCDC28B-202ENST00000421922 MGAM2Q2M2H8 2515 aa12.52□□□□□ -0.41
CCDC28B-202ENST00000421922 S100A8P05109 93 aa12.52□□□□□ -0.41
CCDC28B-202ENST00000421922 IGLC6P0CF74 106 aa12.52□□□□□ -0.41
CCDC28B-202ENST00000421922 RBMY1A1P0DJD3 496 aaKnown RBP12.52□□□□□ -0.41
CCDC28B-202ENST00000421922 RBMY1CP0DJD4 496 aa12.52□□□□□ -0.41
CCDC28B-202ENST00000421922 IGHV4-30-4P0DP06 118 aa12.52□□□□□ -0.41
CCDC28B-202ENST00000421922 RAB5AP20339 215 aa12.52□□□□□ -0.41
CCDC28B-202ENST00000421922 CTRLP40313 264 aa12.52□□□□□ -0.41
CCDC28B-202ENST00000421922 RPS10P46783 165 aaKnown RBP12.52□□□□□ -0.41
CCDC28B-202ENST00000421922 FOXA3P55318 350 aaPredicted RBP12.52□□□□□ -0.41
CCDC28B-202ENST00000421922 RAB4BP61018 213 aa12.52□□□□□ -0.41
CCDC28B-202ENST00000421922 RBMY1FQ15415 496 aaKnown RBP12.52□□□□□ -0.41
CCDC28B-202ENST00000421922 COX19Q49B96 90 aa12.52□□□□□ -0.41
CCDC28B-202ENST00000421922 KIR2DL5BA0A0G2JN68 375 aa12.51□□□□□ -0.41
CCDC28B-202ENST00000421922 KIR2DL5BA0A0G2JPC4 375 aa12.51□□□□□ -0.41
CCDC28B-202ENST00000421922 GNRH2O43555 120 aa12.51□□□□□ -0.41
CCDC28B-202ENST00000421922 MED14OSP0DP75 135 aa12.51□□□□□ -0.41
CCDC28B-202ENST00000421922 WDR73Q6P4I2 378 aa12.51□□□□□ -0.41
CCDC28B-202ENST00000421922 KIR2DL5AQ8N109 375 aa12.51□□□□□ -0.41
CCDC28B-202ENST00000421922 KIR2DL5BQ8NHK3 375 aa12.51□□□□□ -0.41
CCDC28B-202ENST00000421922 PHLDA3Q9Y5J5 127 aa12.51□□□□□ -0.41
CCDC28B-202ENST00000421922 A0A1B0GW15 77 aa12.5□□□□□ -0.41
CCDC28B-202ENST00000421922 ARMS2P0C7Q2 107 aa12.5□□□□□ -0.41
CCDC28B-202ENST00000421922 SSTP61278 116 aa12.5□□□□□ -0.41
CCDC28B-202ENST00000421922 CACNG7P62955 275 aa12.5□□□□□ -0.41
CCDC28B-202ENST00000421922 HBBP68871 147 aa12.5□□□□□ -0.41
CCDC28B-202ENST00000421922 ZNF415Q09FC8 603 aa12.5□□□□□ -0.41
CCDC28B-202ENST00000421922 SPANXN1Q5VSR9 72 aa12.5□□□□□ -0.41
CCDC28B-202ENST00000421922 RASL11AQ6T310 242 aa12.5□□□□□ -0.41
CCDC28B-202ENST00000421922 OR5AL1P0C617 328 aa12.49□□□□□ -0.41
CCDC28B-202ENST00000421922 CAMPP49913 170 aa12.49□□□□□ -0.41
CCDC28B-202ENST00000421922 DNLZQ5SXM8 178 aa12.49□□□□□ -0.41
CCDC28B-202ENST00000421922 LINC00467Q9BRT7 94 aa12.49□□□□□ -0.41
CCDC28B-202ENST00000421922 MUC21A0A0G2JKD1 596 aa12.48□□□□□ -0.41
CCDC28B-202ENST00000421922 MUC21A0A140T8X8 626 aa12.48□□□□□ -0.41
CCDC28B-202ENST00000421922 UBE2CO00762 179 aa12.48□□□□□ -0.41
CCDC28B-202ENST00000421922 SNAI2O43623 268 aa12.48□□□□□ -0.41
CCDC28B-202ENST00000421922 TWIST1Q15672 202 aa12.48□□□□□ -0.41
CCDC28B-202ENST00000421922 C1orf158Q8N1D5 194 aa12.48□□□□□ -0.41
CCDC28B-202ENST00000421922 TP53TG3Q9ULZ0 132 aa12.48□□□□□ -0.41
CCDC28B-202ENST00000421922 PKD1L1Q8TDX9 2849 aa12.48□□□□□ -0.41
CCDC28B-202ENST00000421922 IGHV3-16A0A0C4DH30 117 aa12.47□□□□□ -0.41
CCDC28B-202ENST00000421922 SNURFLB1AK76 121 aa12.47□□□□□ -0.41
CCDC28B-202ENST00000421922 MT-ND6P03923 174 aa12.47□□□□□ -0.41
CCDC28B-202ENST00000421922 GIG44P09565 113 aaPredicted RBP12.47□□□□□ -0.41
CCDC28B-202ENST00000421922 SMIM15Q7Z3B0 74 aa12.47□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms