RNA–Protein interactions for RNA: ENST00000410093.5

LIMS1-205, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,526 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-205ENST00000410093 SPATA12Q7Z6I5 190 aa10.29□□□□□ -0.76
LIMS1-205ENST00000410093 ZNF575Q86XF7 245 aa10.29□□□□□ -0.76
LIMS1-205ENST00000410093 OR8A1Q8NGG7 326 aa10.29□□□□□ -0.76
LIMS1-205ENST00000410093 FN1P02751 2386 aaKnown RBP10.29□□□□□ -0.76
LIMS1-205ENST00000410093 NSD1Q96L73 2696 aaPredicted RBP10.29□□□□□ -0.76
LIMS1-205ENST00000410093 D6R8Y8 96 aa10.28□□□□□ -0.76
LIMS1-205ENST00000410093 CD33P20138 364 aa10.28□□□□□ -0.76
LIMS1-205ENST00000410093 TM4SF20Q53R12 229 aa10.28□□□□□ -0.76
LIMS1-205ENST00000410093 EBLN2Q6P2I7 272 aa10.28□□□□□ -0.76
LIMS1-205ENST00000410093 AMN1Q8IY45 258 aa10.28□□□□□ -0.76
LIMS1-205ENST00000410093 C20orf173Q96LM9 149 aa10.28□□□□□ -0.76
LIMS1-205ENST00000410093 ZNF702PQ9H963 129 aa10.28□□□□□ -0.76
LIMS1-205ENST00000410093 TRAV9-2A0A087WT02 112 aa10.28□□□□□ -0.76
LIMS1-205ENST00000410093 LINC01546A6NGU7 62 aa10.28□□□□□ -0.76
LIMS1-205ENST00000410093 SYS1-DBNDD2H3BUS1 97 aa10.28□□□□□ -0.76
LIMS1-205ENST00000410093 TCF21O43680 179 aa10.28□□□□□ -0.76
LIMS1-205ENST00000410093 DEFB125Q8N687 156 aa10.28□□□□□ -0.76
LIMS1-205ENST00000410093 WFDC12Q8WWY7 111 aa10.28□□□□□ -0.76
LIMS1-205ENST00000410093 C2orf88Q9BSF0 95 aa10.28□□□□□ -0.76
LIMS1-205ENST00000410093 NXT2Q9NPJ8 142 aaKnown RBP10.28□□□□□ -0.76
LIMS1-205ENST00000410093 UQCR10Q9UDW1 63 aa10.28□□□□□ -0.76
LIMS1-205ENST00000410093 PAM16Q9Y3D7 125 aa10.28□□□□□ -0.76
LIMS1-205ENST00000410093 ZANQ9Y493 2812 aa10.28□□□□□ -0.76
LIMS1-205ENST00000410093 M0QZ24 198 aa10.27□□□□□ -0.77
LIMS1-205ENST00000410093 M0R143 59 aa10.27□□□□□ -0.77
LIMS1-205ENST00000410093 HOXA3O43365 443 aaPredicted RBP10.27□□□□□ -0.77
LIMS1-205ENST00000410093 SNRPD3P62318 126 aaKnown RBP10.27□□□□□ -0.77
LIMS1-205ENST00000410093 SPATA45Q537H7 98 aa10.27□□□□□ -0.77
LIMS1-205ENST00000410093 PRIMA1Q86XR5 153 aa10.27□□□□□ -0.77
LIMS1-205ENST00000410093 ZFAND2AQ8N6M9 145 aa10.27□□□□□ -0.77
LIMS1-205ENST00000410093 MAP1LC3AQ9H492 121 aa10.27□□□□□ -0.77
LIMS1-205ENST00000410093 TMEM160Q9NX00 188 aa10.27□□□□□ -0.77
LIMS1-205ENST00000410093 RNF114Q9Y508 228 aa10.27□□□□□ -0.77
LIMS1-205ENST00000410093 PRSS47A8MTI9 375 aa10.26□□□□□ -0.77
LIMS1-205ENST00000410093 DCANP1Q8TF63 244 aa10.26□□□□□ -0.77
LIMS1-205ENST00000410093 SIGLEC8Q9NYZ4 499 aa10.26□□□□□ -0.77
LIMS1-205ENST00000410093 TMEM95Q3KNT9 176 aa10.25□□□□□ -0.77
LIMS1-205ENST00000410093 PSMG4Q5JS54 123 aa10.25□□□□□ -0.77
LIMS1-205ENST00000410093 ZNF705AQ6ZN79 300 aaPredicted RBP10.25□□□□□ -0.77
LIMS1-205ENST00000410093 RNF185Q96GF1 192 aa10.25□□□□□ -0.77
LIMS1-205ENST00000410093 JMJD1CQ15652 2540 aa10.24□□□□□ -0.77
LIMS1-205ENST00000410093 TRAV2A0A0B4J234 112 aa10.24□□□□□ -0.77
LIMS1-205ENST00000410093 RPLP1P05386 114 aaKnown RBP10.24□□□□□ -0.77
LIMS1-205ENST00000410093 CSN3P07498 182 aa10.24□□□□□ -0.77
LIMS1-205ENST00000410093 LEPP41159 167 aa10.24□□□□□ -0.77
LIMS1-205ENST00000410093 ASIPP42127 132 aa10.24□□□□□ -0.77
LIMS1-205ENST00000410093 SCGB2A2Q13296 93 aa10.24□□□□□ -0.77
LIMS1-205ENST00000410093 SPANXN1Q5VSR9 72 aa10.24□□□□□ -0.77
LIMS1-205ENST00000410093 MRAP2Q96G30 205 aa10.24□□□□□ -0.77
LIMS1-205ENST00000410093 ST20Q9HBF5 79 aa10.24□□□□□ -0.77
LIMS1-205ENST00000410093 C11orf21Q9P2W6 132 aa10.24□□□□□ -0.77
LIMS1-205ENST00000410093 SONP18583 2426 aaKnown RBP10.24□□□□□ -0.77
LIMS1-205ENST00000410093 KLLNB2CW77 178 aa10.23□□□□□ -0.77
LIMS1-205ENST00000410093 HSBP1L1C9JCN9 74 aa10.23□□□□□ -0.77
LIMS1-205ENST00000410093 DUSP14O95147 198 aaKnown RBP10.23□□□□□ -0.77
LIMS1-205ENST00000410093 PPP1R17O96001 155 aa10.23□□□□□ -0.77
LIMS1-205ENST00000410093 HBDP02042 147 aa10.23□□□□□ -0.77
LIMS1-205ENST00000410093 SRD5A1P18405 259 aa10.23□□□□□ -0.77
LIMS1-205ENST00000410093 IFI27P40305 119 aaPredicted RBP10.23□□□□□ -0.77
LIMS1-205ENST00000410093 TDRG1Q3Y452 100 aa10.23□□□□□ -0.77
LIMS1-205ENST00000410093 LCNL1Q6ZST4 164 aa10.23□□□□□ -0.77
LIMS1-205ENST00000410093 ZNF747Q9BV97 191 aa10.23□□□□□ -0.77
LIMS1-205ENST00000410093 MS4A6AQ9H2W1 248 aa10.23□□□□□ -0.77
LIMS1-205ENST00000410093 K7EMI3 77 aa10.23□□□□□ -0.77
LIMS1-205ENST00000410093 IGLC3P0DOY3 106 aa10.23□□□□□ -0.77
LIMS1-205ENST00000410093 PRB4P10163 310 aaPredicted RBP10.23□□□□□ -0.77
LIMS1-205ENST00000410093 LINC01545Q5VT33 79 aa10.23□□□□□ -0.77
LIMS1-205ENST00000410093 OR4C46A6NHA9 309 aa10.22□□□□□ -0.77
LIMS1-205ENST00000410093 K7EQG2 157 aa10.22□□□□□ -0.77
LIMS1-205ENST00000410093 S100A4P26447 101 aaKnown RBP10.22□□□□□ -0.77
LIMS1-205ENST00000410093 TSPOP30536 169 aa10.22□□□□□ -0.77
LIMS1-205ENST00000410093 DPF1Q92782 380 aa10.22□□□□□ -0.77
LIMS1-205ENST00000410093 SCRT2Q9NQ03 307 aa10.22□□□□□ -0.77
LIMS1-205ENST00000410093 PEMTQ9UBM1 199 aa10.22□□□□□ -0.77
LIMS1-205ENST00000410093 ANK3Q12955 4377 aaKnown RBP10.21□□□□□ -0.77
LIMS1-205ENST00000410093 TNFRSF6BO95407 300 aa10.21□□□□□ -0.78
LIMS1-205ENST00000410093 NPYP01303 97 aa10.21□□□□□ -0.78
LIMS1-205ENST00000410093 HOXD3P31249 432 aaPredicted RBP10.21□□□□□ -0.78
LIMS1-205ENST00000410093 C4orf3Q8WVX3 66 aa10.21□□□□□ -0.78
LIMS1-205ENST00000410093 PRR9Q5T870 116 aa10.2□□□□□ -0.78
LIMS1-205ENST00000410093 Q8N8P6 123 aa10.2□□□□□ -0.78
LIMS1-205ENST00000410093 MSRB1Q9NZV6 116 aa10.2□□□□□ -0.78
LIMS1-205ENST00000410093 MRPS16Q9Y3D3 137 aaKnown RBP10.2□□□□□ -0.78
LIMS1-205ENST00000410093 PHLDA3Q9Y5J5 127 aa10.2□□□□□ -0.78
LIMS1-205ENST00000410093 IGHV4OR15-8A0A075B7B6 117 aa10.19□□□□□ -0.78
LIMS1-205ENST00000410093 A0A087WW49 117 aa10.19□□□□□ -0.78
LIMS1-205ENST00000410093 LOC389332A0A1B0GUA5 103 aa10.19□□□□□ -0.78
LIMS1-205ENST00000410093 LINC01619G3V211 115 aa10.19□□□□□ -0.78
LIMS1-205ENST00000410093 H3BVH4 76 aa10.19□□□□□ -0.78
LIMS1-205ENST00000410093 M0R381 172 aa10.19□□□□□ -0.78
LIMS1-205ENST00000410093 NXPH4O95158 308 aa10.19□□□□□ -0.78
LIMS1-205ENST00000410093 RNASE4P34096 147 aaKnown RBP10.19□□□□□ -0.78
LIMS1-205ENST00000410093 LGALS9BQ3B8N2 356 aa10.19□□□□□ -0.78
LIMS1-205ENST00000410093 LGALS9CQ6DKI2 356 aa10.19□□□□□ -0.78
LIMS1-205ENST00000410093 FAM159AQ6UWV7 190 aa10.19□□□□□ -0.78
LIMS1-205ENST00000410093 OR2K2Q8NGT1 345 aa10.19□□□□□ -0.78
LIMS1-205ENST00000410093 TMEM158Q8WZ71 300 aa10.19□□□□□ -0.78
LIMS1-205ENST00000410093 DPH3P1Q9H4G8 78 aa10.19□□□□□ -0.78
LIMS1-205ENST00000410093 MUC21A0A0G2JKD1 596 aa10.18□□□□□ -0.78
LIMS1-205ENST00000410093 A0A0J9YX75 114 aa10.18□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms