RNA–Protein interactions for RNA: ENST00000409694.6

SYNE1-210, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,634 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-210ENST00000409694 PRDM6Q9NQX0 595 aa6.3□□□□□ -1.4
SYNE1-210ENST00000409694 NTN5Q8WTR8 489 aaPredicted RBP6.3□□□□□ -1.4
SYNE1-210ENST00000409694 IGKV4-1P06312 121 aa6.3□□□□□ -1.4
SYNE1-210ENST00000409694 CAMK2N2Q96S95 79 aa6.3□□□□□ -1.4
SYNE1-210ENST00000409694 ATP6V0E1O15342 81 aa6.3□□□□□ -1.4
SYNE1-210ENST00000409694 LYNX1G3V0Z9 82 aa6.3□□□□□ -1.4
SYNE1-210ENST00000409694 K7EQD1 137 aa6.3□□□□□ -1.4
SYNE1-210ENST00000409694 LYNX1P0DP58 116 aa6.3□□□□□ -1.4
SYNE1-210ENST00000409694 SELENOKQ9Y6D0 94 aa6.3□□□□□ -1.4
SYNE1-210ENST00000409694 TNS1Q9HBL0 1735 aaKnown RBP6.3□□□□□ -1.4
SYNE1-210ENST00000409694 TRAV26-2A0A0B4J265 109 aa6.3□□□□□ -1.4
SYNE1-210ENST00000409694 TEN1Q86WV5 123 aa6.3□□□□□ -1.4
SYNE1-210ENST00000409694 ACACAQ13085 2346 aa6.29□□□□□ -1.4
SYNE1-210ENST00000409694 IGHV7-4-1A0A0J9YVY3 117 aa6.29□□□□□ -1.4
SYNE1-210ENST00000409694 GGNQ86UU5 652 aa6.29□□□□□ -1.4
SYNE1-210ENST00000409694 C14orf177Q52M58 125 aa6.29□□□□□ -1.4
SYNE1-210ENST00000409694 HCFC1P51610 2035 aa6.29□□□□□ -1.4
SYNE1-210ENST00000409694 IGHV1-69P01742 117 aa6.29□□□□□ -1.4
SYNE1-210ENST00000409694 CCL18P55774 89 aa6.29□□□□□ -1.4
SYNE1-210ENST00000409694 V9GYV3 84 aa6.29□□□□□ -1.4
SYNE1-210ENST00000409694 KIAA1549LQ6ZVL6 1849 aa6.29□□□□□ -1.4
SYNE1-210ENST00000409694 NOTCH3Q9UM47 2321 aa6.29□□□□□ -1.4
SYNE1-210ENST00000409694 IGKV1OR2-108A0A075B7D4 117 aa6.29□□□□□ -1.4
SYNE1-210ENST00000409694 IGHV4-28A0A0C4DH34 117 aa6.29□□□□□ -1.4
SYNE1-210ENST00000409694 FAM240AA0A1B0GVK7 77 aa6.29□□□□□ -1.4
SYNE1-210ENST00000409694 SPTSSBQ8NFR3 76 aa6.29□□□□□ -1.4
SYNE1-210ENST00000409694 IGKV1-27A0A075B6S5 117 aa6.29□□□□□ -1.4
SYNE1-210ENST00000409694 IGHV2-70DA0A0C4DH43 119 aa6.29□□□□□ -1.4
SYNE1-210ENST00000409694 TEX22C9J3V5 150 aa6.29□□□□□ -1.4
SYNE1-210ENST00000409694 MRPL23Q16540 153 aaKnown RBP6.29□□□□□ -1.4
SYNE1-210ENST00000409694 CR1LQ2VPA4 569 aa6.29□□□□□ -1.4
SYNE1-210ENST00000409694 ATP5EP2Q5VTU8 51 aa6.29□□□□□ -1.4
SYNE1-210ENST00000409694 Q8TCH9 128 aa6.29□□□□□ -1.4
SYNE1-210ENST00000409694 IGKV1D-8A0A087WSZ0 117 aa6.29□□□□□ -1.4
SYNE1-210ENST00000409694 NDUFA1O15239 70 aa6.29□□□□□ -1.4
SYNE1-210ENST00000409694 TRAV4A0A0B4J268 109 aa6.28□□□□□ -1.4
SYNE1-210ENST00000409694 SND1-IT1Q9HBX3 110 aa6.28□□□□□ -1.4
SYNE1-210ENST00000409694 KIAA1549Q9HCM3 1950 aa6.28□□□□□ -1.4
SYNE1-210ENST00000409694 USP17L23D6RBM5 183 aa6.28□□□□□ -1.4
SYNE1-210ENST00000409694 H0Y9J4 135 aa6.28□□□□□ -1.4
SYNE1-210ENST00000409694 NDUFS7O75251 213 aa6.28□□□□□ -1.4
SYNE1-210ENST00000409694 TRAV12-2A0A075B6T6 113 aa6.28□□□□□ -1.4
SYNE1-210ENST00000409694 A0A0G2JNJ9 132 aa6.28□□□□□ -1.4
SYNE1-210ENST00000409694 IGHV2-70P01814 119 aa6.28□□□□□ -1.4
SYNE1-210ENST00000409694 Q9UFV3 132 aa6.28□□□□□ -1.4
SYNE1-210ENST00000409694 CLPSL2Q6UWE3 100 aa6.28□□□□□ -1.4
SYNE1-210ENST00000409694 TMEM61Q8N0U2 210 aa6.28□□□□□ -1.4
SYNE1-210ENST00000409694 UPK3BQ9BT76 320 aa6.28□□□□□ -1.4
SYNE1-210ENST00000409694 IGHV3-38A0A0C4DH36 116 aa6.28□□□□□ -1.4
SYNE1-210ENST00000409694 RS1O15537 224 aa6.28□□□□□ -1.4
SYNE1-210ENST00000409694 MBD3L4A6NDZ8 208 aaPredicted RBP6.28□□□□□ -1.4
SYNE1-210ENST00000409694 MBD3L3A6NE82 208 aaPredicted RBP6.28□□□□□ -1.4
SYNE1-210ENST00000409694 MBD3L5A6NJ08 208 aaPredicted RBP6.28□□□□□ -1.4
SYNE1-210ENST00000409694 MBD3L2Q8NHZ7 208 aaPredicted RBP6.28□□□□□ -1.4
SYNE1-210ENST00000409694 TIMM17AQ99595 171 aa6.28□□□□□ -1.4
SYNE1-210ENST00000409694 IGKV1D-17A0A075B6S4 117 aa6.27□□□□□ -1.41
SYNE1-210ENST00000409694 NDUFC2-KCTD14E9PQ53 114 aa6.27□□□□□ -1.41
SYNE1-210ENST00000409694 KIF26AQ9ULI4 1882 aaPredicted RBP6.27□□□□□ -1.41
SYNE1-210ENST00000409694 ELANEP08246 267 aa6.27□□□□□ -1.41
SYNE1-210ENST00000409694 CACNA1BQ00975 2339 aa6.27□□□□□ -1.41
SYNE1-210ENST00000409694 ARHGAP21Q5T5U3 1957 aa6.27□□□□□ -1.41
SYNE1-210ENST00000409694 K7EM74 188 aa6.27□□□□□ -1.41
SYNE1-210ENST00000409694 IGFL4Q6B9Z1 124 aa6.27□□□□□ -1.41
SYNE1-210ENST00000409694 VOPP1Q96AW1 172 aa6.27□□□□□ -1.41
SYNE1-210ENST00000409694 IGKV1-12A0A0C4DH73 117 aa6.27□□□□□ -1.41
SYNE1-210ENST00000409694 IGKV1D-12P01611 117 aa6.27□□□□□ -1.41
SYNE1-210ENST00000409694 NPSP0C0P6 89 aa6.27□□□□□ -1.41
SYNE1-210ENST00000409694 GFI1Q99684 422 aa6.27□□□□□ -1.41
SYNE1-210ENST00000409694 NDUFC1O43677 76 aa6.27□□□□□ -1.41
SYNE1-210ENST00000409694 IGLL1P15814 213 aa6.27□□□□□ -1.41
SYNE1-210ENST00000409694 FOXE3Q13461 319 aa6.27□□□□□ -1.41
SYNE1-210ENST00000409694 DIRC1Q969H9 104 aa6.27□□□□□ -1.41
SYNE1-210ENST00000409694 ZC2HC1AQ96GY0 325 aa6.27□□□□□ -1.41
SYNE1-210ENST00000409694 TANC2Q9HCD6 1990 aa6.27□□□□□ -1.41
SYNE1-210ENST00000409694 TFF1P04155 84 aa6.27□□□□□ -1.41
SYNE1-210ENST00000409694 IGKV1-16P04430 117 aa6.27□□□□□ -1.41
SYNE1-210ENST00000409694 CSRP3P50461 194 aa6.27□□□□□ -1.41
SYNE1-210ENST00000409694 C9orf66Q5T8R8 295 aa6.27□□□□□ -1.41
SYNE1-210ENST00000409694 CRYGBP07316 175 aa6.27□□□□□ -1.41
SYNE1-210ENST00000409694 NOP10Q9NPE3 64 aaKnown RBP6.27□□□□□ -1.41
SYNE1-210ENST00000409694 C17orf77Q96MU5 243 aa6.26□□□□□ -1.41
SYNE1-210ENST00000409694 U3KQE9 123 aa6.26□□□□□ -1.41
SYNE1-210ENST00000409694 BPESC1Q9GZL8 116 aa6.26□□□□□ -1.41
SYNE1-210ENST00000409694 PNRC2Q9NPJ4 139 aaKnown RBP6.26□□□□□ -1.41
SYNE1-210ENST00000409694 H3BT86 120 aa6.26□□□□□ -1.41
SYNE1-210ENST00000409694 LGALS9O00182 355 aa6.26□□□□□ -1.41
SYNE1-210ENST00000409694 HIST2H2BCQ6DN03 193 aa6.26□□□□□ -1.41
SYNE1-210ENST00000409694 IGLC7A0M8Q6 106 aa6.26□□□□□ -1.41
SYNE1-210ENST00000409694 TEX36Q5VZQ5 186 aa6.26□□□□□ -1.41
SYNE1-210ENST00000409694 C5orf24Q7Z6I8 188 aa6.26□□□□□ -1.41
SYNE1-210ENST00000409694 LINC00311Q8N616 119 aa6.26□□□□□ -1.41
SYNE1-210ENST00000409694 TGFBR3LH3BV60 316 aa6.26□□□□□ -1.41
SYNE1-210ENST00000409694 ATRXP46100 2492 aa6.25□□□□□ -1.41
SYNE1-210ENST00000409694 IGHV4-4A0A075B6R2 117 aa6.25□□□□□ -1.41
SYNE1-210ENST00000409694 DUX4L9Q6RFH8 374 aaPredicted RBP6.25□□□□□ -1.41
SYNE1-210ENST00000409694 DKK2Q9UBU2 259 aa6.25□□□□□ -1.41
SYNE1-210ENST00000409694 ARHGAP32A7KAX9 2087 aa6.25□□□□□ -1.41
SYNE1-210ENST00000409694 TRBV10-2A0A0K0K1G8 114 aa6.25□□□□□ -1.41
SYNE1-210ENST00000409694 QRFPP83859 136 aa6.25□□□□□ -1.41
SYNE1-210ENST00000409694 IL17DQ8TAD2 202 aa6.25□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 65.7 ms