RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 DNAH14Q0VDD8 3507 aa14.37□□□□□ -0.11
USP48-204ENST00000400301 FSTL3O95633 263 aa14.37□□□□□ -0.11
USP48-204ENST00000400301 LINC00310P59036 64 aa14.37□□□□□ -0.11
USP48-204ENST00000400301 C2orf66Q6UXQ4 117 aa14.37□□□□□ -0.11
USP48-204ENST00000400301 TEX29Q8N6K0 151 aa14.37□□□□□ -0.11
USP48-204ENST00000400301 NAV2Q8IVL1 2488 aa14.36□□□□□ -0.11
USP48-204ENST00000400301 TRGV11A0A075B6L2 103 aa14.36□□□□□ -0.11
USP48-204ENST00000400301 A0A1B0GWB2 263 aa14.36□□□□□ -0.11
USP48-204ENST00000400301 GAGE12BA1L429 117 aa14.36□□□□□ -0.11
USP48-204ENST00000400301 IGHV4-38-2P0DP08 117 aa14.36□□□□□ -0.11
USP48-204ENST00000400301 C5orf56Q8N8D9 126 aa14.36□□□□□ -0.11
USP48-204ENST00000400301 SMIM2Q9BVW6 85 aa14.36□□□□□ -0.11
USP48-204ENST00000400301 TET2Q6N021 2002 aaPredicted RBP14.36□□□□□ -0.11
USP48-204ENST00000400301 ANKRD39Q53RE8 183 aa14.36□□□□□ -0.11
USP48-204ENST00000400301 MEGF9Q9H1U4 602 aa14.36□□□□□ -0.11
USP48-204ENST00000400301 CCDC168Q8NDH2 2452 aa14.36□□□□□ -0.11
USP48-204ENST00000400301 HIVEP3Q5T1R4 2406 aa14.35□□□□□ -0.11
USP48-204ENST00000400301 BLCAPP62952 87 aa14.35□□□□□ -0.11
USP48-204ENST00000400301 MRPL53Q96EL3 112 aaKnown RBP14.35□□□□□ -0.11
USP48-204ENST00000400301 PAX2Q02962 417 aa14.34□□□□□ -0.11
USP48-204ENST00000400301 ZNF876PQ49A33 203 aa14.34□□□□□ -0.11
USP48-204ENST00000400301 BEX4Q9NWD9 120 aaPredicted RBP14.34□□□□□ -0.11
USP48-204ENST00000400301 IGHV3-73A0A0B4J1V6 119 aa14.34□□□□□ -0.11
USP48-204ENST00000400301 IGHV7-4-1A0A0J9YVY3 117 aa14.34□□□□□ -0.11
USP48-204ENST00000400301 WNK1Q9H4A3 2382 aa14.34□□□□□ -0.11
USP48-204ENST00000400301 LINC01549A6NIU2 74 aa14.34□□□□□ -0.11
USP48-204ENST00000400301 RPL13AP40429 203 aaKnown RBP14.34□□□□□ -0.11
USP48-204ENST00000400301 RRN3P1Q2M238 152 aa14.34□□□□□ -0.11
USP48-204ENST00000400301 ZNF418Q8TF45 676 aaPredicted RBP14.34□□□□□ -0.11
USP48-204ENST00000400301 LINC01548A6NM66 108 aa14.34□□□□□ -0.11
USP48-204ENST00000400301 GATA3P23771 443 aa14.34□□□□□ -0.11
USP48-204ENST00000400301 ZNF80P51504 273 aaPredicted RBP14.34□□□□□ -0.11
USP48-204ENST00000400301 RNF223E7ERA6 249 aa14.33□□□□□ -0.11
USP48-204ENST00000400301 HOXA3O43365 443 aaPredicted RBP14.33□□□□□ -0.11
USP48-204ENST00000400301 SPINK13Q1W4C9 94 aa14.33□□□□□ -0.11
USP48-204ENST00000400301 PCP2Q8IVA1 136 aa14.33□□□□□ -0.11
USP48-204ENST00000400301 SORL1Q92673 2214 aa14.33□□□□□ -0.12
USP48-204ENST00000400301 NEGR1Q7Z3B1 354 aa14.33□□□□□ -0.12
USP48-204ENST00000400301 CTRLP40313 264 aa14.33□□□□□ -0.12
USP48-204ENST00000400301 IGHV3-64A0A075B6Q5 118 aa14.32□□□□□ -0.12
USP48-204ENST00000400301 LMO4P61968 165 aa14.32□□□□□ -0.12
USP48-204ENST00000400301 USP9YO00507 2555 aaPredicted RBP14.32□□□□□ -0.12
USP48-204ENST00000400301 IGHV4-30-2A0A087WSY4 118 aa14.32□□□□□ -0.12
USP48-204ENST00000400301 COX6CP09669 75 aa14.32□□□□□ -0.12
USP48-204ENST00000400301 GNRH2O43555 120 aa14.32□□□□□ -0.12
USP48-204ENST00000400301 LOXL1Q08397 574 aaPredicted RBP14.32□□□□□ -0.12
USP48-204ENST00000400301 LENEPQ9Y5L5 61 aa14.32□□□□□ -0.12
USP48-204ENST00000400301 TRAV12-2A0A075B6T6 113 aa14.31□□□□□ -0.12
USP48-204ENST00000400301 TMEM95Q3KNT9 176 aa14.31□□□□□ -0.12
USP48-204ENST00000400301 VWC2LB2RUY7 222 aa14.31□□□□□ -0.12
USP48-204ENST00000400301 H3BRM9 83 aa14.31□□□□□ -0.12
USP48-204ENST00000400301 IGLV2-11P01706 119 aa14.31□□□□□ -0.12
USP48-204ENST00000400301 CRIP1P50238 77 aa14.31□□□□□ -0.12
USP48-204ENST00000400301 SCRT2Q9NQ03 307 aa14.31□□□□□ -0.12
USP48-204ENST00000400301 CD28P10747 220 aa14.31□□□□□ -0.12
USP48-204ENST00000400301 CDSNQ15517 529 aa14.3□□□□□ -0.12
USP48-204ENST00000400301 C16orf54Q6UWD8 224 aa14.3□□□□□ -0.12
USP48-204ENST00000400301 KLK9Q9UKQ9 250 aa14.3□□□□□ -0.12
USP48-204ENST00000400301 TP53TG1Q9Y2A0 90 aa14.3□□□□□ -0.12
USP48-204ENST00000400301 UBE2L6O14933 153 aa14.3□□□□□ -0.12
USP48-204ENST00000400301 SMAGPQ0VAQ4 97 aa14.3□□□□□ -0.12
USP48-204ENST00000400301 DEFB125Q8N687 156 aa14.3□□□□□ -0.12
USP48-204ENST00000400301 C2CD3Q4AC94 2353 aa14.3□□□□□ -0.12
USP48-204ENST00000400301 DEFB131AP59861 70 aa14.29□□□□□ -0.12
USP48-204ENST00000400301 DEFB1P60022 68 aa14.29□□□□□ -0.12
USP48-204ENST00000400301 C19orf54Q5BKX5 351 aa14.29□□□□□ -0.12
USP48-204ENST00000400301 H3BUA1 57 aa14.29□□□□□ -0.12
USP48-204ENST00000400301 IGHV4-59P01825 116 aa14.29□□□□□ -0.12
USP48-204ENST00000400301 ZNF493Q6ZR52 646 aa14.29□□□□□ -0.12
USP48-204ENST00000400301 CFAP54Q96N23 3096 aa14.29□□□□□ -0.12
USP48-204ENST00000400301 C9orf118A6NHY6 69 aa14.29□□□□□ -0.12
USP48-204ENST00000400301 CCL25O15444 150 aa14.29□□□□□ -0.12
USP48-204ENST00000400301 CCDC140Q96MF4 163 aa14.29□□□□□ -0.12
USP48-204ENST00000400301 LAMA1P25391 3075 aa14.28□□□□□ -0.12
USP48-204ENST00000400301 F8VRH5 84 aa14.28□□□□□ -0.12
USP48-204ENST00000400301 C11orf71Q6IPW1 123 aa14.28□□□□□ -0.12
USP48-204ENST00000400301 CST9LQ9H4G1 147 aa14.28□□□□□ -0.12
USP48-204ENST00000400301 CIRBPQ14011 172 aaKnown RBP14.28□□□□□ -0.12
USP48-204ENST00000400301 STHQ8IWL8 128 aa14.28□□□□□ -0.12
USP48-204ENST00000400301 IGKV3OR2-268A0A0C4DH90 116 aa14.28□□□□□ -0.12
USP48-204ENST00000400301 SDHAF1A6NFY7 115 aa14.28□□□□□ -0.12
USP48-204ENST00000400301 RIPPLY3P57055 190 aa14.28□□□□□ -0.12
USP48-204ENST00000400301 C10orf105Q8TEF2 133 aa14.28□□□□□ -0.12
USP48-204ENST00000400301 AJUBAQ96IF1 538 aa14.28□□□□□ -0.12
USP48-204ENST00000400301 TRAV2A0A0B4J234 112 aa14.27□□□□□ -0.12
USP48-204ENST00000400301 USP9XQ93008 2570 aaPredicted RBP14.27□□□□□ -0.12
USP48-204ENST00000400301 EBI3Q14213 229 aa14.27□□□□□ -0.12
USP48-204ENST00000400301 DEFB112Q30KQ8 113 aa14.27□□□□□ -0.12
USP48-204ENST00000400301 TP73-AS1Q9UF72 201 aa14.27□□□□□ -0.13
USP48-204ENST00000400301 UNQ9165/PRO28630Q6UXU0 137 aa14.27□□□□□ -0.13
USP48-204ENST00000400301 MEIG1Q5JSS6 88 aa14.26□□□□□ -0.13
USP48-204ENST00000400301 TRBV12-3P01733 135 aa14.26□□□□□ -0.13
USP48-204ENST00000400301 C9orf47Q6ZRZ4 202 aa14.26□□□□□ -0.13
USP48-204ENST00000400301 C20orf78Q9BR46 151 aa14.26□□□□□ -0.13
USP48-204ENST00000400301 TLN2Q9Y4G6 2542 aa14.26□□□□□ -0.13
USP48-204ENST00000400301 IGKV3D-20A0A0C4DH25 116 aa14.25□□□□□ -0.13
USP48-204ENST00000400301 IGHV1OR15-1A0A075B7D0 117 aa14.25□□□□□ -0.13
USP48-204ENST00000400301 A0A087WX48 190 aa14.25□□□□□ -0.13
USP48-204ENST00000400301 KNCNA6PVL3 124 aa14.25□□□□□ -0.13
USP48-204ENST00000400301 C19orf84I3L1E1 186 aa14.25□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 103.6 ms