RNA–Protein interactions for RNA: ENST00000389805.8

SQSTM1-202, Transcript of sequestosome 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SQSTM1, Length 2,986 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-202ENST00000389805 FOXI1Q12951 378 aa13.63□□□□□ -0.23
SQSTM1-202ENST00000389805 MRPL16Q9NX20 251 aaKnown RBP13.63□□□□□ -0.23
SQSTM1-202ENST00000389805 PGPEP1Q9NXJ5 209 aa13.63□□□□□ -0.23
SQSTM1-202ENST00000389805 ATP5LO75964 103 aa13.62□□□□□ -0.23
SQSTM1-202ENST00000389805 ERCC8Q13216 396 aa13.62□□□□□ -0.23
SQSTM1-202ENST00000389805 FHL3Q13643 280 aa13.62□□□□□ -0.23
SQSTM1-202ENST00000389805 NFE4Q86UQ8 179 aa13.62□□□□□ -0.23
SQSTM1-202ENST00000389805 CDIP1Q9H305 208 aa13.62□□□□□ -0.23
SQSTM1-202ENST00000389805 LINC01548A6NM66 108 aa13.62□□□□□ -0.23
SQSTM1-202ENST00000389805 TRGV3P03979 118 aa13.62□□□□□ -0.23
SQSTM1-202ENST00000389805 MYOZ3Q8TDC0 251 aa13.62□□□□□ -0.23
SQSTM1-202ENST00000389805 LOC107984156A0A0G2JMH3 177 aa13.62□□□□□ -0.23
SQSTM1-202ENST00000389805 ARL17AQ8IVW1 177 aa13.62□□□□□ -0.23
SQSTM1-202ENST00000389805 SMCPP49901 116 aaPredicted RBP13.61□□□□□ -0.23
SQSTM1-202ENST00000389805 MFAP4P55083 255 aa13.61□□□□□ -0.23
SQSTM1-202ENST00000389805 SRSF1Q07955 248 aaKnown RBP eCLIP13.61□□□□□ -0.231e-6■■□□□ 13.1
SQSTM1-202ENST00000389805 Q8N6K4 173 aa13.61□□□□□ -0.23
SQSTM1-202ENST00000389805 PKD1L2Q7Z442 2459 aa13.61□□□□□ -0.23
SQSTM1-202ENST00000389805 MORN3Q6PF18 240 aaPredicted RBP13.61□□□□□ -0.23
SQSTM1-202ENST00000389805 BPESC1Q9GZL8 116 aa13.61□□□□□ -0.23
SQSTM1-202ENST00000389805 SIRPDQ9H106 197 aa13.61□□□□□ -0.23
SQSTM1-202ENST00000389805 C21orf62Q9NYP8 219 aa13.61□□□□□ -0.23
SQSTM1-202ENST00000389805 IGHV7-81A0A0B4J1V7 117 aa13.6□□□□□ -0.23
SQSTM1-202ENST00000389805 PSMB2P49721 201 aa13.6□□□□□ -0.23
SQSTM1-202ENST00000389805 UFC1Q9Y3C8 167 aa13.6□□□□□ -0.23
SQSTM1-202ENST00000389805 TGFAP01135 160 aa13.6□□□□□ -0.23
SQSTM1-202ENST00000389805 TRBV7-3A0A075B6L6 115 aa13.59□□□□□ -0.23
SQSTM1-202ENST00000389805 HOXA3O43365 443 aaPredicted RBP13.59□□□□□ -0.23
SQSTM1-202ENST00000389805 XGP55808 180 aa13.59□□□□□ -0.23
SQSTM1-202ENST00000389805 ZFP2Q6ZN57 461 aa13.59□□□□□ -0.23
SQSTM1-202ENST00000389805 C1orf122Q6ZSJ8 110 aa13.59□□□□□ -0.23
SQSTM1-202ENST00000389805 Q8N9W7 124 aa13.59□□□□□ -0.23
SQSTM1-202ENST00000389805 Q8N8P6 123 aa13.59□□□□□ -0.23
SQSTM1-202ENST00000389805 RNF183Q96D59 192 aa13.59□□□□□ -0.23
SQSTM1-202ENST00000389805 AJUBAQ96IF1 538 aa13.59□□□□□ -0.23
SQSTM1-202ENST00000389805 C1QTNF4Q9BXJ3 329 aa13.59□□□□□ -0.23
SQSTM1-202ENST00000389805 PSMG4Q5JS54 123 aa13.58□□□□□ -0.24
SQSTM1-202ENST00000389805 CFAP46Q8IYW2 2715 aa13.58□□□□□ -0.24
SQSTM1-202ENST00000389805 LINC01549A6NIU2 74 aa13.58□□□□□ -0.24
SQSTM1-202ENST00000389805 CTSGP08311 255 aa13.58□□□□□ -0.24
SQSTM1-202ENST00000389805 GNLYP22749 145 aa13.58□□□□□ -0.24
SQSTM1-202ENST00000389805 ZNF48Q96MX3 618 aaPredicted RBP13.58□□□□□ -0.24
SQSTM1-202ENST00000389805 TAL2Q16559 108 aa13.57□□□□□ -0.24
SQSTM1-202ENST00000389805 ECSCRQ19T08 205 aa13.57□□□□□ -0.24
SQSTM1-202ENST00000389805 ITLN2Q8WWU7 325 aaPredicted RBP13.57□□□□□ -0.24
SQSTM1-202ENST00000389805 IGLV2-18A0A075B6J9 118 aa13.57□□□□□ -0.24
SQSTM1-202ENST00000389805 IGHV3OR16-10A0A075B7F0 116 aa13.57□□□□□ -0.24
SQSTM1-202ENST00000389805 A0A087WX48 190 aa13.57□□□□□ -0.24
SQSTM1-202ENST00000389805 PRAC2D3DTV9 90 aa13.57□□□□□ -0.24
SQSTM1-202ENST00000389805 HLA-DRB4P13762 266 aa13.57□□□□□ -0.24
SQSTM1-202ENST00000389805 SAA4P35542 130 aa13.57□□□□□ -0.24
SQSTM1-202ENST00000389805 HLA-DRB4X5D2U9 266 aa13.57□□□□□ -0.24
SQSTM1-202ENST00000389805 CACNA1AO00555 2505 aa13.56□□□□□ -0.24
SQSTM1-202ENST00000389805 OR11H12B2RN74 326 aa13.56□□□□□ -0.24
SQSTM1-202ENST00000389805 PDE6HQ13956 83 aa13.56□□□□□ -0.24
SQSTM1-202ENST00000389805 EBI3Q14213 229 aa13.56□□□□□ -0.24
SQSTM1-202ENST00000389805 LAGE3Q14657 143 aa13.56□□□□□ -0.24
SQSTM1-202ENST00000389805 MINOS1Q5TGZ0 78 aa13.56□□□□□ -0.24
SQSTM1-202ENST00000389805 CFAP126Q5VTH2 177 aa13.56□□□□□ -0.24
SQSTM1-202ENST00000389805 CRYBG3Q68DQ2 2970 aa13.56□□□□□ -0.24
SQSTM1-202ENST00000389805 OR11H1Q8NG94 326 aa13.56□□□□□ -0.24
SQSTM1-202ENST00000389805 OR11H2Q8NH07 326 aa13.56□□□□□ -0.24
SQSTM1-202ENST00000389805 MINOS1-NBL1R4GNA1 71 aa13.56□□□□□ -0.24
SQSTM1-202ENST00000389805 ZFYVE26Q68DK2 2539 aa13.56□□□□□ -0.24
SQSTM1-202ENST00000389805 CELSR2Q9HCU4 2923 aa13.56□□□□□ -0.24
SQSTM1-202ENST00000389805 LMO4P61968 165 aa13.56□□□□□ -0.24
SQSTM1-202ENST00000389805 SS18L2Q9UHA2 77 aa13.56□□□□□ -0.24
SQSTM1-202ENST00000389805 MYMXA0A1B0GTQ4 84 aa13.56□□□□□ -0.24
SQSTM1-202ENST00000389805 LINC01546A6NGU7 62 aa13.56□□□□□ -0.24
SQSTM1-202ENST00000389805 FABP5P3A8MUU1 101 aa13.56□□□□□ -0.24
SQSTM1-202ENST00000389805 Q6ZUT4 128 aa13.56□□□□□ -0.24
SQSTM1-202ENST00000389805 CSMD2Q7Z408 3487 aa13.55□□□□□ -0.24
SQSTM1-202ENST00000389805 G3V318 75 aa13.55□□□□□ -0.24
SQSTM1-202ENST00000389805 SPRY2O43597 315 aa13.55□□□□□ -0.24
SQSTM1-202ENST00000389805 IGHG4P01861 327 aa13.55□□□□□ -0.24
SQSTM1-202ENST00000389805 Q6ZQT7 251 aa13.55□□□□□ -0.24
SQSTM1-202ENST00000389805 RNF182Q8N6D2 247 aa13.55□□□□□ -0.24
SQSTM1-202ENST00000389805 IL17RELQ6ZVW7 336 aa13.55□□□□□ -0.24
SQSTM1-202ENST00000389805 PIEZO1Q92508 2521 aa13.54□□□□□ -0.24
SQSTM1-202ENST00000389805 DLX4Q92988 240 aaPredicted RBP13.54□□□□□ -0.24
SQSTM1-202ENST00000389805 FLNCQ14315 2725 aa13.54□□□□□ -0.24
SQSTM1-202ENST00000389805 IGHV3OR16-13A0A075B7E8 117 aa13.54□□□□□ -0.24
SQSTM1-202ENST00000389805 IGHV3-74A0A0B4J1X5 117 aa13.54□□□□□ -0.24
SQSTM1-202ENST00000389805 ATP6V0E1O15342 81 aa13.54□□□□□ -0.24
SQSTM1-202ENST00000389805 SMAD5-AS1Q9Y6J3 95 aa13.54□□□□□ -0.24
SQSTM1-202ENST00000389805 IGHV3-66A0A0C4DH42 116 aa13.53□□□□□ -0.24
SQSTM1-202ENST00000389805 H3BVH4 76 aa13.53□□□□□ -0.24
SQSTM1-202ENST00000389805 C15orf32Q32M92 178 aa13.53□□□□□ -0.24
SQSTM1-202ENST00000389805 LGALS1P09382 135 aaKnown RBP13.53□□□□□ -0.24
SQSTM1-202ENST00000389805 UBE2E1P51965 193 aa13.53□□□□□ -0.24
SQSTM1-202ENST00000389805 C11orf21Q9P2W6 132 aa13.53□□□□□ -0.24
SQSTM1-202ENST00000389805 OOSP1A8MZH6 123 aa13.53□□□□□ -0.24
SQSTM1-202ENST00000389805 SRSF9Q13242 221 aaKnown RBP eCLIP13.53□□□□□ -0.24
SQSTM1-202ENST00000389805 SCGB1D4Q6XE38 83 aa13.53□□□□□ -0.24
SQSTM1-202ENST00000389805 DEFB104AQ8WTQ1 72 aa13.53□□□□□ -0.24
SQSTM1-202ENST00000389805 ABCA2Q9BZC7 2435 aa13.52□□□□□ -0.24
SQSTM1-202ENST00000389805 IGKV3D-20A0A0C4DH25 116 aa13.52□□□□□ -0.24
SQSTM1-202ENST00000389805 PRSS29PA6NIE9 313 aa13.52□□□□□ -0.24
SQSTM1-202ENST00000389805 CLEC3BP05452 202 aa13.52□□□□□ -0.24
SQSTM1-202ENST00000389805 PLNP26678 52 aa13.52□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 55.8 ms