RNA–Protein interactions for RNA: ENST00000373006.5

USP49-201, Transcript of ubiquitin specific peptidase 49, humanhuman

TSL 1 (best) BASIC

Gene USP49, Length 3,177 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-201ENST00000373006 SCGB1A1P11684 91 aa10.58□□□□□ -0.72
USP49-201ENST00000373006 MYOZ3Q8TDC0 251 aa10.58□□□□□ -0.72
USP49-201ENST00000373006 TMEM190Q8WZ59 177 aa10.58□□□□□ -0.72
USP49-201ENST00000373006 SPG11Q96JI7 2443 aa10.57□□□□□ -0.72
USP49-201ENST00000373006 IGKV3D-20A0A0C4DH25 116 aa10.57□□□□□ -0.72
USP49-201ENST00000373006 C12orf74Q32Q52 190 aa10.57□□□□□ -0.72
USP49-201ENST00000373006 Q8N8P6 123 aa10.57□□□□□ -0.72
USP49-201ENST00000373006 ATP5LO75964 103 aa10.57□□□□□ -0.72
USP49-201ENST00000373006 XGP55808 180 aa10.57□□□□□ -0.72
USP49-201ENST00000373006 PSMG3-AS1Q96PY0 264 aa10.57□□□□□ -0.72
USP49-201ENST00000373006 CNFNQ9BYD5 112 aa10.57□□□□□ -0.72
USP49-201ENST00000373006 IGLV2-18A0A075B6J9 118 aa10.57□□□□□ -0.72
USP49-201ENST00000373006 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP10.57□□□□□ -0.72
USP49-201ENST00000373006 SPRY2O43597 315 aa10.57□□□□□ -0.72
USP49-201ENST00000373006 LINC01546A6NGU7 62 aa10.56□□□□□ -0.72
USP49-201ENST00000373006 F8W1H4 67 aa10.56□□□□□ -0.72
USP49-201ENST00000373006 PGPEP1Q9NXJ5 209 aa10.56□□□□□ -0.72
USP49-201ENST00000373006 NPBQ8NG41 125 aa10.56□□□□□ -0.72
USP49-201ENST00000373006 KIR2DL4Q99706 377 aa10.56□□□□□ -0.72
USP49-201ENST00000373006 CITED1Q99966 193 aa10.56□□□□□ -0.72
USP49-201ENST00000373006 GRNP28799 593 aaKnown RBP10.55□□□□□ -0.72
USP49-201ENST00000373006 LAGE3Q14657 143 aa10.55□□□□□ -0.72
USP49-201ENST00000373006 B9A039 149 aa10.55□□□□□ -0.72
USP49-201ENST00000373006 PRTN3P24158 256 aa10.55□□□□□ -0.72
USP49-201ENST00000373006 SPATA25Q9BR10 227 aa10.55□□□□□ -0.72
USP49-201ENST00000373006 H7C2G1 150 aa10.55□□□□□ -0.72
USP49-201ENST00000373006 LINC01559Q495D7 138 aa10.55□□□□□ -0.72
USP49-201ENST00000373006 TTC9CQ8N5M4 171 aa10.55□□□□□ -0.72
USP49-201ENST00000373006 AGPAT4-IT1Q9H0P7 198 aa10.55□□□□□ -0.72
USP49-201ENST00000373006 CELSR1Q9NYQ6 3014 aa10.54□□□□□ -0.72
USP49-201ENST00000373006 BRI3O95415 125 aa10.54□□□□□ -0.72
USP49-201ENST00000373006 CD3EP07766 207 aa10.54□□□□□ -0.72
USP49-201ENST00000373006 ZNF672Q499Z4 452 aaPredicted RBP10.54□□□□□ -0.72
USP49-201ENST00000373006 NRACQ8N912 160 aa10.53□□□□□ -0.72
USP49-201ENST00000373006 A0A087WX48 190 aa10.53□□□□□ -0.72
USP49-201ENST00000373006 PSMG4Q5JS54 123 aa10.53□□□□□ -0.72
USP49-201ENST00000373006 SPANXN1Q5VSR9 72 aa10.53□□□□□ -0.72
USP49-201ENST00000373006 Q8NA96 180 aa10.53□□□□□ -0.72
USP49-201ENST00000373006 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP10.53□□□□□ -0.722e-7■■■■■ 27.8
USP49-201ENST00000373006 FHL3Q13643 280 aa10.53□□□□□ -0.72
USP49-201ENST00000373006 PIEZO1Q92508 2521 aa10.52□□□□□ -0.73
USP49-201ENST00000373006 FOXI1Q12951 378 aa10.52□□□□□ -0.73
USP49-201ENST00000373006 ZFP2Q6ZN57 461 aa10.52□□□□□ -0.73
USP49-201ENST00000373006 NFE4Q86UQ8 179 aa10.52□□□□□ -0.73
USP49-201ENST00000373006 SRSF1Q07955 248 aaKnown RBP eCLIP10.52□□□□□ -0.73
USP49-201ENST00000373006 C15orf32Q32M92 178 aa10.52□□□□□ -0.73
USP49-201ENST00000373006 TCTEX1D4Q5JR98 221 aa10.52□□□□□ -0.73
USP49-201ENST00000373006 OR11H6Q8NGC7 330 aa10.52□□□□□ -0.73
USP49-201ENST00000373006 BUB3O43684 328 aa10.51□□□□□ -0.73
USP49-201ENST00000373006 SRSF2Q01130 221 aaKnown RBP10.51□□□□□ -0.73
USP49-201ENST00000373006 ECSCRQ19T08 205 aa10.51□□□□□ -0.73
USP49-201ENST00000373006 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa10.51□□□□□ -0.73
USP49-201ENST00000373006 SCGB1D4Q6XE38 83 aa10.51□□□□□ -0.73
USP49-201ENST00000373006 Q6ZUT4 128 aa10.51□□□□□ -0.73
USP49-201ENST00000373006 TRBV7-9A0A0J9YWB2 115 aa10.51□□□□□ -0.73
USP49-201ENST00000373006 SCGB1C2P0DMR2 95 aa10.51□□□□□ -0.73
USP49-201ENST00000373006 ID1P41134 155 aa10.51□□□□□ -0.73
USP49-201ENST00000373006 IGHV7-4-1A0A0J9YVY3 117 aa10.51□□□□□ -0.73
USP49-201ENST00000373006 LINC01549A6NIU2 74 aa10.51□□□□□ -0.73
USP49-201ENST00000373006 SRSF9Q13242 221 aaKnown RBP eCLIP10.51□□□□□ -0.73
USP49-201ENST00000373006 RRN3P1Q2M238 152 aa10.51□□□□□ -0.73
USP49-201ENST00000373006 LY6G5BQ8NDX9 201 aa10.5□□□□□ -0.73
USP49-201ENST00000373006 C1QTNF4Q9BXJ3 329 aa10.5□□□□□ -0.73
USP49-201ENST00000373006 TMEM78Q5T7P6 136 aa10.5□□□□□ -0.73
USP49-201ENST00000373006 CDIP1Q9H305 208 aa10.5□□□□□ -0.73
USP49-201ENST00000373006 IGHV7-81A0A0B4J1V7 117 aa10.49□□□□□ -0.73
USP49-201ENST00000373006 OR11H12B2RN74 326 aa10.49□□□□□ -0.73
USP49-201ENST00000373006 HLA-DRB4P13762 266 aa10.49□□□□□ -0.73
USP49-201ENST00000373006 EMP1P54849 157 aa10.49□□□□□ -0.73
USP49-201ENST00000373006 TEX29Q8N6K0 151 aa10.49□□□□□ -0.73
USP49-201ENST00000373006 OR11H1Q8NG94 326 aa10.49□□□□□ -0.73
USP49-201ENST00000373006 OR11H2Q8NH07 326 aa10.49□□□□□ -0.73
USP49-201ENST00000373006 HLA-DRB4X5D2U9 266 aa10.49□□□□□ -0.73
USP49-201ENST00000373006 HRNRQ86YZ3 2850 aaPredicted RBP10.49□□□□□ -0.73
USP49-201ENST00000373006 TRBV7-3A0A075B6L6 115 aa10.49□□□□□ -0.73
USP49-201ENST00000373006 IGF1P05019 195 aa10.49□□□□□ -0.73
USP49-201ENST00000373006 PLNP26678 52 aa10.49□□□□□ -0.73
USP49-201ENST00000373006 CLEC19AQ6UXS0 136 aa10.49□□□□□ -0.73
USP49-201ENST00000373006 PF4V1P10720 104 aa10.49□□□□□ -0.73
USP49-201ENST00000373006 SCGB3A1Q96QR1 104 aa10.49□□□□□ -0.73
USP49-201ENST00000373006 PRO0461Q9UI25 63 aa10.49□□□□□ -0.73
USP49-201ENST00000373006 MYMXA0A1B0GTQ4 84 aa10.48□□□□□ -0.73
USP49-201ENST00000373006 H7C1H1 209 aa10.48□□□□□ -0.73
USP49-201ENST00000373006 M0R381 172 aa10.48□□□□□ -0.73
USP49-201ENST00000373006 TAL2Q16559 108 aa10.48□□□□□ -0.73
USP49-201ENST00000373006 F8VRH5 84 aa10.48□□□□□ -0.73
USP49-201ENST00000373006 HOXA3O43365 443 aaPredicted RBP10.48□□□□□ -0.73
USP49-201ENST00000373006 ARL3P36405 182 aa10.48□□□□□ -0.73
USP49-201ENST00000373006 VMO1Q7Z5L0 202 aa10.48□□□□□ -0.73
USP49-201ENST00000373006 ZNF502Q8TBZ5 544 aa10.48□□□□□ -0.73
USP49-201ENST00000373006 VKORC1Q9BQB6 163 aa10.48□□□□□ -0.73
USP49-201ENST00000373006 ZFAND3Q9H8U3 227 aa10.48□□□□□ -0.73
USP49-201ENST00000373006 TRAV8-2A0A0B4J237 113 aa10.47□□□□□ -0.73
USP49-201ENST00000373006 MORN3Q6PF18 240 aaPredicted RBP10.47□□□□□ -0.73
USP49-201ENST00000373006 MSRB2Q9Y3D2 182 aa10.47□□□□□ -0.73
USP49-201ENST00000373006 ZFHX3Q15911 3703 aa10.47□□□□□ -0.73
USP49-201ENST00000373006 ODF3BA8MYP8 253 aa10.47□□□□□ -0.73
USP49-201ENST00000373006 ZFAND6Q6FIF0 208 aa10.47□□□□□ -0.73
USP49-201ENST00000373006 RPL39LQ96EH5 51 aaKnown RBP10.47□□□□□ -0.73
USP49-201ENST00000373006 CREBBPQ92793 2442 aa10.47□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms