RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 C11orf71Q6IPW1 123 aa9.3□□□□□ -0.92
CLIP3-201ENST00000360535 C14orf178Q8N769 122 aaPredicted RBP9.3□□□□□ -0.92
CLIP3-201ENST00000360535 MAPKAPK5-AS1Q8N8E1 139 aa9.3□□□□□ -0.92
CLIP3-201ENST00000360535 SIRPDQ9H106 197 aa9.3□□□□□ -0.92
CLIP3-201ENST00000360535 LAGE3Q14657 143 aa9.3□□□□□ -0.92
CLIP3-201ENST00000360535 NEGR1Q7Z3B1 354 aa9.3□□□□□ -0.92
CLIP3-201ENST00000360535 Q8N8P6 123 aa9.3□□□□□ -0.92
CLIP3-201ENST00000360535 SLC50A1Q9BRV3 221 aa9.3□□□□□ -0.92
CLIP3-201ENST00000360535 CRYBG3Q68DQ2 2970 aa9.3□□□□□ -0.92
CLIP3-201ENST00000360535 SFTA2Q6UW10 78 aa9.29□□□□□ -0.92
CLIP3-201ENST00000360535 DPF1Q92782 380 aa9.29□□□□□ -0.92
CLIP3-201ENST00000360535 UNQ9165/PRO28630Q6UXU0 137 aa9.29□□□□□ -0.92
CLIP3-201ENST00000360535 RPL39LQ96EH5 51 aaKnown RBP9.29□□□□□ -0.92
CLIP3-201ENST00000360535 C20orf173Q96LM9 149 aa9.29□□□□□ -0.92
CLIP3-201ENST00000360535 RNASE4P34096 147 aaKnown RBP9.28□□□□□ -0.92
CLIP3-201ENST00000360535 EMP1P54849 157 aa9.28□□□□□ -0.92
CLIP3-201ENST00000360535 HIST1H4GQ99525 98 aa9.28□□□□□ -0.92
CLIP3-201ENST00000360535 UBE2E1P51965 193 aa9.28□□□□□ -0.92
CLIP3-201ENST00000360535 FBXL19-AS1Q494R0 122 aa9.28□□□□□ -0.92
CLIP3-201ENST00000360535 UFSP1Q6NVU6 142 aa9.28□□□□□ -0.92
CLIP3-201ENST00000360535 GTSF1LQ9H1H1 148 aa9.28□□□□□ -0.92
CLIP3-201ENST00000360535 CENPEQ02224 2701 aa9.28□□□□□ -0.92
CLIP3-201ENST00000360535 USP9YO00507 2555 aaPredicted RBP9.28□□□□□ -0.92
CLIP3-201ENST00000360535 IGHV7-4-1A0A0J9YVY3 117 aa9.27□□□□□ -0.92
CLIP3-201ENST00000360535 CENPVL3A0A0U1RRI6 287 aa9.27□□□□□ -0.92
CLIP3-201ENST00000360535 ARL3P36405 182 aa9.27□□□□□ -0.92
CLIP3-201ENST00000360535 NBL1P41271 181 aa9.27□□□□□ -0.92
CLIP3-201ENST00000360535 SCGB2A2Q13296 93 aa9.27□□□□□ -0.92
CLIP3-201ENST00000360535 EBI3Q14213 229 aa9.27□□□□□ -0.92
CLIP3-201ENST00000360535 AMTNQ6UX39 209 aa9.27□□□□□ -0.92
CLIP3-201ENST00000360535 OOSP1A8MZH6 123 aa9.27□□□□□ -0.93
CLIP3-201ENST00000360535 NPFFO15130 113 aa9.27□□□□□ -0.93
CLIP3-201ENST00000360535 SMAGPQ0VAQ4 97 aa9.27□□□□□ -0.93
CLIP3-201ENST00000360535 KLRB1Q12918 225 aa9.27□□□□□ -0.93
CLIP3-201ENST00000360535 COX8CQ7Z4L0 72 aa9.27□□□□□ -0.93
CLIP3-201ENST00000360535 PHLDA3Q9Y5J5 127 aa9.27□□□□□ -0.93
CLIP3-201ENST00000360535 GNRH2O43555 120 aa9.27□□□□□ -0.93
CLIP3-201ENST00000360535 CIDEAO60543 219 aa9.27□□□□□ -0.93
CLIP3-201ENST00000360535 SCGB3A1Q96QR1 104 aa9.27□□□□□ -0.93
CLIP3-201ENST00000360535 SIVA1O15304 175 aa9.26□□□□□ -0.93
CLIP3-201ENST00000360535 ATP5LO75964 103 aa9.26□□□□□ -0.93
CLIP3-201ENST00000360535 RAB9AP51151 201 aa9.26□□□□□ -0.93
CLIP3-201ENST00000360535 NRACQ8N912 160 aa9.26□□□□□ -0.93
CLIP3-201ENST00000360535 TRAV41A0A0B4J266 112 aa9.26□□□□□ -0.93
CLIP3-201ENST00000360535 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP9.26□□□□□ -0.93
CLIP3-201ENST00000360535 PF4V1P10720 104 aa9.26□□□□□ -0.93
CLIP3-201ENST00000360535 SRSF1Q07955 248 aaKnown RBP eCLIP9.26□□□□□ -0.93
CLIP3-201ENST00000360535 SAMD13Q5VXD3 122 aa9.26□□□□□ -0.93
CLIP3-201ENST00000360535 CNFNQ9BYD5 112 aa9.26□□□□□ -0.93
CLIP3-201ENST00000360535 ABCA2Q9BZC7 2435 aa9.26□□□□□ -0.93
CLIP3-201ENST00000360535 C1orf122Q6ZSJ8 110 aa9.26□□□□□ -0.93
CLIP3-201ENST00000360535 CYSLTR1Q9Y271 337 aa9.26□□□□□ -0.93
CLIP3-201ENST00000360535 CUBNO60494 3623 aa9.25□□□□□ -0.93
CLIP3-201ENST00000360535 IGKV3-20P01619 116 aa9.25□□□□□ -0.93
CLIP3-201ENST00000360535 AJUBAQ96IF1 538 aa9.25□□□□□ -0.93
CLIP3-201ENST00000360535 CELSR2Q9HCU4 2923 aa9.25□□□□□ -0.93
CLIP3-201ENST00000360535 IGLV2-18A0A075B6J9 118 aa9.25□□□□□ -0.93
CLIP3-201ENST00000360535 OR10J6PQ8NGY7 276 aa9.25□□□□□ -0.93
CLIP3-201ENST00000360535 TMEM190Q8WZ59 177 aa9.25□□□□□ -0.93
CLIP3-201ENST00000360535 POLQO75417 2590 aa9.25□□□□□ -0.93
CLIP3-201ENST00000360535 ANXA2RQ3ZCQ2 193 aa9.24□□□□□ -0.93
CLIP3-201ENST00000360535 C5orf56Q8N8D9 126 aa9.24□□□□□ -0.93
CLIP3-201ENST00000360535 TRBV7-1A0A0A6YYK4 115 aa9.24□□□□□ -0.93
CLIP3-201ENST00000360535 CEND1Q8N111 149 aa9.24□□□□□ -0.93
CLIP3-201ENST00000360535 NPFFR1Q9GZQ6 430 aa9.24□□□□□ -0.93
CLIP3-201ENST00000360535 TEX48A0A1B0GUV7 120 aa9.24□□□□□ -0.93
CLIP3-201ENST00000360535 RBAKDNA6NC62 111 aa9.24□□□□□ -0.93
CLIP3-201ENST00000360535 NACAE9PAV3 2078 aa9.23□□□□□ -0.93
CLIP3-201ENST00000360535 F5H697 171 aa9.23□□□□□ -0.93
CLIP3-201ENST00000360535 H3BMG7 143 aa9.23□□□□□ -0.93
CLIP3-201ENST00000360535 LMO4P61968 165 aa9.23□□□□□ -0.93
CLIP3-201ENST00000360535 SMIM2Q9BVW6 85 aa9.23□□□□□ -0.93
CLIP3-201ENST00000360535 EDN2P20800 178 aa9.23□□□□□ -0.93
CLIP3-201ENST00000360535 ZMAT4Q9H898 229 aa9.23□□□□□ -0.93
CLIP3-201ENST00000360535 JPT2Q9H910 190 aa9.23□□□□□ -0.93
CLIP3-201ENST00000360535 CHTOPQ9Y3Y2 248 aaKnown RBP9.23□□□□□ -0.93
CLIP3-201ENST00000360535 A0A087WX48 190 aa9.23□□□□□ -0.93
CLIP3-201ENST00000360535 ZNF479Q96JC4 524 aa9.23□□□□□ -0.93
CLIP3-201ENST00000360535 OR11H12B2RN74 326 aa9.22□□□□□ -0.93
CLIP3-201ENST00000360535 ASIPP42127 132 aa9.22□□□□□ -0.93
CLIP3-201ENST00000360535 SUMO2P61956 95 aaKnown RBP9.22□□□□□ -0.93
CLIP3-201ENST00000360535 WFDC2Q14508 124 aa9.22□□□□□ -0.93
CLIP3-201ENST00000360535 C9orf47Q6ZRZ4 202 aa9.22□□□□□ -0.93
CLIP3-201ENST00000360535 OR11H1Q8NG94 326 aa9.22□□□□□ -0.93
CLIP3-201ENST00000360535 OR11H2Q8NH07 326 aa9.22□□□□□ -0.93
CLIP3-201ENST00000360535 G3V4G9 280 aa9.22□□□□□ -0.93
CLIP3-201ENST00000360535 BLCAPP62952 87 aa9.22□□□□□ -0.93
CLIP3-201ENST00000360535 SRSF2Q01130 221 aaKnown RBP9.22□□□□□ -0.93
CLIP3-201ENST00000360535 CD300EQ496F6 205 aaPredicted RBP9.22□□□□□ -0.93
CLIP3-201ENST00000360535 FAM74A4Q5TZK3 123 aa9.22□□□□□ -0.93
CLIP3-201ENST00000360535 SCGB1D4Q6XE38 83 aa9.22□□□□□ -0.93
CLIP3-201ENST00000360535 Q6ZS46 218 aa9.22□□□□□ -0.93
CLIP3-201ENST00000360535 SH2D6Q7Z4S9 175 aa9.22□□□□□ -0.93
CLIP3-201ENST00000360535 OR5A1Q8NGJ0 315 aa9.22□□□□□ -0.93
CLIP3-201ENST00000360535 FAM208BQ5VWN6 2430 aa9.22□□□□□ -0.93
CLIP3-201ENST00000360535 ZFYVE26Q68DK2 2539 aa9.22□□□□□ -0.93
CLIP3-201ENST00000360535 ACACBO00763 2458 aa9.21□□□□□ -0.93
CLIP3-201ENST00000360535 MUC4Q99102 2169 aa9.21□□□□□ -0.93
CLIP3-201ENST00000360535 A0A087WWL8 130 aa9.21□□□□□ -0.93
CLIP3-201ENST00000360535 C19orf84I3L1E1 186 aa9.21□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms