RNA–Protein interactions for RNA: ENST00000357409.9

VPS13A-202, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 9,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-202ENST00000357409 ADCYAP1P18509 176 aa5.7□□□□□ -1.5
VPS13A-202ENST00000357409 IGLC1P0CG04 106 aa5.7□□□□□ -1.5
VPS13A-202ENST00000357409 RETNLBQ9BQ08 111 aa5.7□□□□□ -1.5
VPS13A-202ENST00000357409 H3BRN7 92 aa5.7□□□□□ -1.5
VPS13A-202ENST00000357409 UBE2CO00762 179 aa5.7□□□□□ -1.5
VPS13A-202ENST00000357409 HSD52Q0P140 79 aa5.7□□□□□ -1.5
VPS13A-202ENST00000357409 PIP4P1Q86T03 277 aa5.7□□□□□ -1.5
VPS13A-202ENST00000357409 DNAJC9-AS1A6NH13 148 aa5.7□□□□□ -1.5
VPS13A-202ENST00000357409 CARHSP1Q9Y2V2 147 aaKnown RBP5.7□□□□□ -1.5
VPS13A-202ENST00000357409 OOSP1A8MZH6 123 aa5.69□□□□□ -1.5
VPS13A-202ENST00000357409 MSMPQ1L6U9 139 aa5.69□□□□□ -1.5
VPS13A-202ENST00000357409 C9orf85Q96MD7 179 aa5.69□□□□□ -1.5
VPS13A-202ENST00000357409 SDK2Q58EX2 2172 aa5.69□□□□□ -1.5
VPS13A-202ENST00000357409 IGKV1D-37A0A075B6S9 117 aa5.69□□□□□ -1.5
VPS13A-202ENST00000357409 COLCA2A8K830 154 aa5.69□□□□□ -1.5
VPS13A-202ENST00000357409 FHL1Q13642 323 aa5.69□□□□□ -1.5
VPS13A-202ENST00000357409 DNAJC30Q96LL9 226 aa5.69□□□□□ -1.5
VPS13A-202ENST00000357409 LINC00269Q8N2A0 174 aa5.69□□□□□ -1.5
VPS13A-202ENST00000357409 PYY3Q5JQD4 70 aa5.69□□□□□ -1.5
VPS13A-202ENST00000357409 Q8N1Y9 231 aa5.69□□□□□ -1.5
VPS13A-202ENST00000357409 Q8N7P7 452 aa5.69□□□□□ -1.5
VPS13A-202ENST00000357409 ICOSQ9Y6W8 199 aa5.69□□□□□ -1.5
VPS13A-202ENST00000357409 CACNA1DQ01668 2161 aa5.69□□□□□ -1.5
VPS13A-202ENST00000357409 A0A0J9YXV3 536 aa5.69□□□□□ -1.5
VPS13A-202ENST00000357409 RHODO00212 210 aa5.69□□□□□ -1.5
VPS13A-202ENST00000357409 FAM104BQ5XKR9 115 aa5.69□□□□□ -1.5
VPS13A-202ENST00000357409 ZSWIM8A7E2V4 1837 aa5.69□□□□□ -1.5
VPS13A-202ENST00000357409 C10orf105Q8TEF2 133 aa5.69□□□□□ -1.5
VPS13A-202ENST00000357409 TRAV16A0A0A6YYK6 109 aaPredicted RBP5.68□□□□□ -1.5
VPS13A-202ENST00000357409 CHKB-CPT1BH3BT56 60 aa5.68□□□□□ -1.5
VPS13A-202ENST00000357409 C11orf53Q8IXP5 236 aa5.68□□□□□ -1.5
VPS13A-202ENST00000357409 GREB1LQ9C091 1923 aaPredicted RBP5.68□□□□□ -1.5
VPS13A-202ENST00000357409 GHRHP01286 108 aa5.68□□□□□ -1.5
VPS13A-202ENST00000357409 MYO7BQ6PIF6 2116 aa5.68□□□□□ -1.5
VPS13A-202ENST00000357409 RHOHQ15669 191 aa5.68□□□□□ -1.5
VPS13A-202ENST00000357409 FANCMQ8IYD8 2048 aa5.68□□□□□ -1.5
VPS13A-202ENST00000357409 A0A087WZ39 114 aa5.68□□□□□ -1.5
VPS13A-202ENST00000357409 PCP2Q8IVA1 136 aa5.68□□□□□ -1.5
VPS13A-202ENST00000357409 Q8NA96 180 aa5.68□□□□□ -1.5
VPS13A-202ENST00000357409 TRAV13-2A0A0B4J235 113 aa5.68□□□□□ -1.5
VPS13A-202ENST00000357409 K7EN84 100 aa5.68□□□□□ -1.5
VPS13A-202ENST00000357409 RNF5Q99942 180 aa5.68□□□□□ -1.5
VPS13A-202ENST00000357409 MRPL36Q9P0J6 103 aaKnown RBP5.68□□□□□ -1.5
VPS13A-202ENST00000357409 DYSFO75923 2080 aa5.68□□□□□ -1.5
VPS13A-202ENST00000357409 CCL25O15444 150 aa5.68□□□□□ -1.5
VPS13A-202ENST00000357409 IGLV2-11P01706 119 aa5.68□□□□□ -1.5
VPS13A-202ENST00000357409 FRMD6-AS1P0C7T7 363 aa5.68□□□□□ -1.5
VPS13A-202ENST00000357409 NTN5Q8WTR8 489 aaPredicted RBP5.68□□□□□ -1.5
VPS13A-202ENST00000357409 DOCK9Q9BZ29 2069 aa5.68□□□□□ -1.5
VPS13A-202ENST00000357409 ARAP2Q8WZ64 1704 aa5.68□□□□□ -1.5
VPS13A-202ENST00000357409 PARP14Q460N5 1801 aa5.68□□□□□ -1.5
VPS13A-202ENST00000357409 NPSP0C0P6 89 aa5.68□□□□□ -1.5
VPS13A-202ENST00000357409 PI4KAP42356 2102 aa5.68□□□□□ -1.5
VPS13A-202ENST00000357409 IGKV2D-26A0A0A0MRZ7 120 aa5.68□□□□□ -1.5
VPS13A-202ENST00000357409 IGLV1-44P01699 117 aa5.68□□□□□ -1.5
VPS13A-202ENST00000357409 KRTAP10-9P60411 292 aa5.68□□□□□ -1.5
VPS13A-202ENST00000357409 SH2D6Q7Z4S9 175 aa5.68□□□□□ -1.5
VPS13A-202ENST00000357409 FXYD5Q96DB9 178 aa5.68□□□□□ -1.5
VPS13A-202ENST00000357409 PATJQ8NI35 1801 aa5.67□□□□□ -1.5
VPS13A-202ENST00000357409 A0A1B0GW15 77 aa5.67□□□□□ -1.5
VPS13A-202ENST00000357409 SLPIP03973 132 aa5.67□□□□□ -1.5
VPS13A-202ENST00000357409 A0A087WWC5 75 aa5.67□□□□□ -1.5
VPS13A-202ENST00000357409 C2orf70A6NJV1 201 aa5.67□□□□□ -1.5
VPS13A-202ENST00000357409 ARFGEF1Q9Y6D6 1849 aa5.67□□□□□ -1.5
VPS13A-202ENST00000357409 BRI3O95415 125 aa5.67□□□□□ -1.5
VPS13A-202ENST00000357409 ARFGEF3Q5TH69 2177 aa5.67□□□□□ -1.5
VPS13A-202ENST00000357409 CDPF1Q6NVV7 123 aa5.67□□□□□ -1.5
VPS13A-202ENST00000357409 LOC100131303A0A0U1RQF7 123 aa5.67□□□□□ -1.5
VPS13A-202ENST00000357409 IFI6P09912 130 aa5.67□□□□□ -1.5
VPS13A-202ENST00000357409 EDN2P20800 178 aa5.67□□□□□ -1.5
VPS13A-202ENST00000357409 FAM19A5Q7Z5A7 132 aaPredicted RBP5.67□□□□□ -1.5
VPS13A-202ENST00000357409 KLK5Q9Y337 293 aaPredicted RBP5.67□□□□□ -1.5
VPS13A-202ENST00000357409 GAGE12HA6NDE8 117 aa5.67□□□□□ -1.5
VPS13A-202ENST00000357409 MPLKIPQ8TAP9 179 aa5.67□□□□□ -1.5
VPS13A-202ENST00000357409 LOC285556D6RIA3 1793 aa5.67□□□□□ -1.5
VPS13A-202ENST00000357409 C8orf31Q8N9H6 132 aa5.67□□□□□ -1.5
VPS13A-202ENST00000357409 TMEM61Q8N0U2 210 aa5.67□□□□□ -1.5
VPS13A-202ENST00000357409 CACNA1IQ9P0X4 2223 aa5.67□□□□□ -1.5
VPS13A-202ENST00000357409 CDH23Q9H251 3354 aa5.67□□□□□ -1.5
VPS13A-202ENST00000357409 MUSTN1Q8IVN3 82 aa5.66□□□□□ -1.5
VPS13A-202ENST00000357409 C5orf56Q8N8D9 126 aa5.66□□□□□ -1.5
VPS13A-202ENST00000357409 THSD7AQ9UPZ6 1657 aa5.66□□□□□ -1.5
VPS13A-202ENST00000357409 TRBV20-1A0A075B6N2 111 aa5.66□□□□□ -1.5
VPS13A-202ENST00000357409 J3QLI3 93 aa5.66□□□□□ -1.5
VPS13A-202ENST00000357409 C18orf32Q8TCD1 76 aa5.66□□□□□ -1.5
VPS13A-202ENST00000357409 XAGE1AQ9HD64 81 aa5.66□□□□□ -1.5
VPS13A-202ENST00000357409 CDSNQ15517 529 aa5.66□□□□□ -1.5
VPS13A-202ENST00000357409 MRPL23Q16540 153 aaKnown RBP5.66□□□□□ -1.5
VPS13A-202ENST00000357409 ETDBQ3ZM63 59 aa5.66□□□□□ -1.5
VPS13A-202ENST00000357409 COL4A3Q01955 1670 aa5.66□□□□□ -1.5
VPS13A-202ENST00000357409 KIF13BQ9NQT8 1826 aa5.66□□□□□ -1.5
VPS13A-202ENST00000357409 POLR3KQ9Y2Y1 108 aaPredicted RBP5.66□□□□□ -1.5
VPS13A-202ENST00000357409 DEFB131BA0A096LNP1 70 aa5.66□□□□□ -1.5
VPS13A-202ENST00000357409 COX7A2LO14548 114 aa5.66□□□□□ -1.5
VPS13A-202ENST00000357409 EP400Q96L91 3159 aa5.66□□□□□ -1.5
VPS13A-202ENST00000357409 BAALC-AS2P0C853 105 aa5.66□□□□□ -1.5
VPS13A-202ENST00000357409 IGFL3Q6UXB1 125 aa5.66□□□□□ -1.5
VPS13A-202ENST00000357409 CARD19Q96LW7 228 aa5.66□□□□□ -1.5
VPS13A-202ENST00000357409 PRSS46E5RG02 174 aa5.66□□□□□ -1.5
VPS13A-202ENST00000357409 TMEM141Q96I45 108 aa5.66□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms