RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 DENND4CQ5VZ89 1909 aa15.42■□□□□ 0.06
CCDC88B-202ENST00000356786 IGHV1OR15-1A0A075B7D0 117 aa15.42■□□□□ 0.06
CCDC88B-202ENST00000356786 DYNAPQ8N1N2 210 aa15.42■□□□□ 0.06
CCDC88B-202ENST00000356786 SMIM20Q8N5G0 67 aa15.42■□□□□ 0.06
CCDC88B-202ENST00000356786 IGLV1-44P01699 117 aa15.41■□□□□ 0.06
CCDC88B-202ENST00000356786 UBL5Q9BZL1 73 aa15.41■□□□□ 0.06
CCDC88B-202ENST00000356786 C11orf53Q8IXP5 236 aa15.41■□□□□ 0.06
CCDC88B-202ENST00000356786 IGF2BP2-AS1Q96M15 143 aa15.41■□□□□ 0.06
CCDC88B-202ENST00000356786 AGPAT4-IT1Q9H0P7 198 aa15.41■□□□□ 0.06
CCDC88B-202ENST00000356786 TRACP01848 142 aa15.41■□□□□ 0.06
CCDC88B-202ENST00000356786 BDP1A6H8Y1 2624 aa15.41■□□□□ 0.06
CCDC88B-202ENST00000356786 TRAV12-2A0A075B6T6 113 aa15.41■□□□□ 0.06
CCDC88B-202ENST00000356786 PATE2Q6UY27 113 aa15.4■□□□□ 0.06
CCDC88B-202ENST00000356786 IGHV3-38A0A0C4DH36 116 aa15.4■□□□□ 0.06
CCDC88B-202ENST00000356786 RS1O15537 224 aa15.4■□□□□ 0.06
CCDC88B-202ENST00000356786 HAMPP81172 84 aa15.4■□□□□ 0.06
CCDC88B-202ENST00000356786 Q6ZSR3 168 aa15.4■□□□□ 0.06
CCDC88B-202ENST00000356786 MSRB1Q9NZV6 116 aa15.4■□□□□ 0.06
CCDC88B-202ENST00000356786 RPL35AP18077 110 aaKnown RBP15.39■□□□□ 0.05
CCDC88B-202ENST00000356786 ZNF493Q6ZR52 646 aa15.39■□□□□ 0.05
CCDC88B-202ENST00000356786 GTSF1Q8WW33 167 aa15.39■□□□□ 0.05
CCDC88B-202ENST00000356786 TNCP24821 2201 aa15.39■□□□□ 0.05
CCDC88B-202ENST00000356786 UBE2E1P51965 193 aa15.39■□□□□ 0.05
CCDC88B-202ENST00000356786 SS18Q15532 418 aa15.38■□□□□ 0.05
CCDC88B-202ENST00000356786 CFHR4Q92496 578 aa15.38■□□□□ 0.05
CCDC88B-202ENST00000356786 B4DSR2 109 aa15.38■□□□□ 0.05
CCDC88B-202ENST00000356786 GP9P14770 177 aa15.38■□□□□ 0.05
CCDC88B-202ENST00000356786 RNASE13Q5GAN3 156 aaKnown RBP15.38■□□□□ 0.05
CCDC88B-202ENST00000356786 DTX1Q86Y01 620 aa15.38■□□□□ 0.05
CCDC88B-202ENST00000356786 XCL2Q9UBD3 114 aa15.38■□□□□ 0.05
CCDC88B-202ENST00000356786 FOXE3Q13461 319 aa15.38■□□□□ 0.05
CCDC88B-202ENST00000356786 FAM167A-AS1Q96KT0 104 aa15.38■□□□□ 0.05
CCDC88B-202ENST00000356786 SPRY2O43597 315 aa15.37■□□□□ 0.05
CCDC88B-202ENST00000356786 LTBP2Q14767 1821 aa15.37■□□□□ 0.05
CCDC88B-202ENST00000356786 SHISA9B4DS77 424 aa15.37■□□□□ 0.05
CCDC88B-202ENST00000356786 CMC4P56277 68 aaPredicted RBP15.37■□□□□ 0.05
CCDC88B-202ENST00000356786 TEN1Q86WV5 123 aa15.37■□□□□ 0.05
CCDC88B-202ENST00000356786 IGHG4P01861 327 aa15.37■□□□□ 0.05
CCDC88B-202ENST00000356786 BOD1L2Q8IYS8 172 aa15.37■□□□□ 0.05
CCDC88B-202ENST00000356786 DEFB130BP0DP73 79 aa15.36■□□□□ 0.05
CCDC88B-202ENST00000356786 DEFB130AP0DP74 79 aa15.36■□□□□ 0.05
CCDC88B-202ENST00000356786 ZNRF2Q8NHG8 242 aa15.36■□□□□ 0.05
CCDC88B-202ENST00000356786 PLXNB3Q9ULL4 1909 aa15.36■□□□□ 0.05
CCDC88B-202ENST00000356786 RUSC1-AS1Q66K80 236 aa15.36■□□□□ 0.05
CCDC88B-202ENST00000356786 KLHL30-AS1Q8NEE0 82 aa15.36■□□□□ 0.05
CCDC88B-202ENST00000356786 TMEM126AQ9H061 195 aa15.36■□□□□ 0.05
CCDC88B-202ENST00000356786 C11orf1Q9H5F2 150 aa15.36■□□□□ 0.05
CCDC88B-202ENST00000356786 TINCRA0A1B0GVN0 87 aa15.35■□□□□ 0.05
CCDC88B-202ENST00000356786 G3V4G9 280 aa15.34■□□□□ 0.05
CCDC88B-202ENST00000356786 NDUFA4O00483 81 aa15.34■□□□□ 0.05
CCDC88B-202ENST00000356786 GNRH2O43555 120 aa15.34■□□□□ 0.05
CCDC88B-202ENST00000356786 NXPH4O95158 308 aa15.34■□□□□ 0.05
CCDC88B-202ENST00000356786 KIF26AQ9ULI4 1882 aaPredicted RBP15.34■□□□□ 0.05
CCDC88B-202ENST00000356786 ZFHX2Q9C0A1 2572 aaPredicted RBP15.34■□□□□ 0.05
CCDC88B-202ENST00000356786 IGKV1-17P01599 117 aa15.34■□□□□ 0.05
CCDC88B-202ENST00000356786 NCOA6Q14686 2063 aaPredicted RBP15.34■□□□□ 0.05
CCDC88B-202ENST00000356786 TRAV12-1A0A0B4J245 112 aa15.34■□□□□ 0.05
CCDC88B-202ENST00000356786 LY6DQ14210 128 aa15.34■□□□□ 0.05
CCDC88B-202ENST00000356786 HIGD1BQ9P298 99 aa15.34■□□□□ 0.05
CCDC88B-202ENST00000356786 FAM208BQ5VWN6 2430 aa15.33■□□□□ 0.05
CCDC88B-202ENST00000356786 IGKV1OR2-108A0A075B7D4 117 aa15.33■□□□□ 0.04
CCDC88B-202ENST00000356786 C2orf16Q68DN1 1984 aa15.33■□□□□ 0.04
CCDC88B-202ENST00000356786 C22orf46C9J442 243 aa15.33■□□□□ 0.04
CCDC88B-202ENST00000356786 C2orf70A6NJV1 201 aa15.33■□□□□ 0.04
CCDC88B-202ENST00000356786 CR1LQ2VPA4 569 aa15.33■□□□□ 0.04
CCDC88B-202ENST00000356786 NSUN5P1Q3KNT7 163 aa15.33■□□□□ 0.04
CCDC88B-202ENST00000356786 F6UB75 175 aa15.32■□□□□ 0.04
CCDC88B-202ENST00000356786 C2CD3Q4AC94 2353 aa15.32■□□□□ 0.04
CCDC88B-202ENST00000356786 DENND4AQ7Z401 1863 aa15.32■□□□□ 0.04
CCDC88B-202ENST00000356786 A4D1N5 150 aa15.32■□□□□ 0.04
CCDC88B-202ENST00000356786 PLXNB1O43157 2135 aa15.32■□□□□ 0.04
CCDC88B-202ENST00000356786 TRAV13-2A0A0B4J235 113 aa15.31■□□□□ 0.04
CCDC88B-202ENST00000356786 TRAV26-1A0A087WT03 109 aa15.31■□□□□ 0.04
CCDC88B-202ENST00000356786 FOXI1Q12951 378 aa15.31■□□□□ 0.04
CCDC88B-202ENST00000356786 RPL39LQ96EH5 51 aaKnown RBP15.31■□□□□ 0.04
CCDC88B-202ENST00000356786 KIAA1671Q9BY89 1806 aa15.31■□□□□ 0.04
CCDC88B-202ENST00000356786 BAALC-AS2P0C853 105 aa15.3■□□□□ 0.04
CCDC88B-202ENST00000356786 PLA2G2CQ5R387 149 aa15.3■□□□□ 0.04
CCDC88B-202ENST00000356786 NACAE9PAV3 2078 aa15.3■□□□□ 0.04
CCDC88B-202ENST00000356786 KAAG1Q9UBP8 84 aa15.3■□□□□ 0.04
CCDC88B-202ENST00000356786 IGHV1-69DA0A0B4J2H0 117 aa15.3■□□□□ 0.04
CCDC88B-202ENST00000356786 PLA2G5P39877 138 aa15.3■□□□□ 0.04
CCDC88B-202ENST00000356786 CFHR3Q02985 330 aa15.3■□□□□ 0.04
CCDC88B-202ENST00000356786 RNF138Q8WVD3 245 aa15.3■□□□□ 0.04
CCDC88B-202ENST00000356786 KRTAP27-1Q3LI81 207 aa15.29■□□□□ 0.04
CCDC88B-202ENST00000356786 TMEM243Q9BU79 118 aa15.29■□□□□ 0.04
CCDC88B-202ENST00000356786 PRSS47A8MTI9 375 aa15.29■□□□□ 0.04
CCDC88B-202ENST00000356786 IGLV2-14P01704 120 aa15.29■□□□□ 0.04
CCDC88B-202ENST00000356786 HERVK_113P63121 156 aa15.29■□□□□ 0.04
CCDC88B-202ENST00000356786 SPATA12Q7Z6I5 190 aa15.28■□□□□ 0.04
CCDC88B-202ENST00000356786 CRLF1O75462 422 aa15.28■□□□□ 0.04
CCDC88B-202ENST00000356786 CITED2Q99967 270 aaPredicted RBP15.28■□□□□ 0.04
CCDC88B-202ENST00000356786 RHOHQ15669 191 aa15.28■□□□□ 0.04
CCDC88B-202ENST00000356786 CTSZQ9UBR2 303 aa15.28■□□□□ 0.04
CCDC88B-202ENST00000356786 LENEPQ9Y5L5 61 aa15.28■□□□□ 0.04
CCDC88B-202ENST00000356786 ACACBO00763 2458 aa15.27■□□□□ 0.04
CCDC88B-202ENST00000356786 LINC01620Q4KN68 170 aa15.27■□□□□ 0.04
CCDC88B-202ENST00000356786 DSCR9P59020 149 aa15.27■□□□□ 0.04
CCDC88B-202ENST00000356786 K7EIM0 57 aa15.27■□□□□ 0.03
CCDC88B-202ENST00000356786 Q9H8V8 135 aa15.27■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms