RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 TRAV12-3A0A0B4J271 114 aa6.85□□□□□ -1.31
USP4-202ENST00000351842 A0A1W2PRE2 83 aa6.85□□□□□ -1.31
USP4-202ENST00000351842 PTTG1IPP53801 180 aa6.85□□□□□ -1.31
USP4-202ENST00000351842 BAGE2Q86Y30 109 aa6.85□□□□□ -1.31
USP4-202ENST00000351842 OR8A1Q8NGG7 326 aa6.85□□□□□ -1.31
USP4-202ENST00000351842 SLC50A1Q9BRV3 221 aa6.85□□□□□ -1.31
USP4-202ENST00000351842 AGPAT4-IT1Q9H0P7 198 aa6.85□□□□□ -1.31
USP4-202ENST00000351842 CSTL1Q9H114 145 aa6.85□□□□□ -1.31
USP4-202ENST00000351842 DIRC3C9JPN6 131 aa6.84□□□□□ -1.31
USP4-202ENST00000351842 CA1P00915 261 aaPredicted RBP6.84□□□□□ -1.31
USP4-202ENST00000351842 GNG4P50150 75 aa6.84□□□□□ -1.31
USP4-202ENST00000351842 TMEM183AQ8IXX5 376 aa6.84□□□□□ -1.31
USP4-202ENST00000351842 K7EQM0 130 aa6.84□□□□□ -1.31
USP4-202ENST00000351842 DEFB4AO15263 64 aa6.84□□□□□ -1.31
USP4-202ENST00000351842 SPINK4O60575 86 aa6.84□□□□□ -1.31
USP4-202ENST00000351842 PPBPP02775 128 aa6.84□□□□□ -1.31
USP4-202ENST00000351842 RPL19P84098 196 aaKnown RBP6.84□□□□□ -1.31
USP4-202ENST00000351842 BATFQ16520 125 aa6.84□□□□□ -1.31
USP4-202ENST00000351842 ZNF705AQ6ZN79 300 aaPredicted RBP6.84□□□□□ -1.31
USP4-202ENST00000351842 TRBV20OR9-2A0A075B6H5 130 aa6.84□□□□□ -1.32
USP4-202ENST00000351842 K7EP13 123 aa6.84□□□□□ -1.32
USP4-202ENST00000351842 GPX1P07203 203 aa6.84□□□□□ -1.32
USP4-202ENST00000351842 FAM3BP58499 235 aaPredicted RBP6.84□□□□□ -1.32
USP4-202ENST00000351842 PDE6DO43924 150 aa6.83□□□□□ -1.32
USP4-202ENST00000351842 GCGP01275 180 aa6.83□□□□□ -1.32
USP4-202ENST00000351842 TCL1AP56279 114 aa6.83□□□□□ -1.32
USP4-202ENST00000351842 FAM110AQ9BQ89 295 aa6.83□□□□□ -1.32
USP4-202ENST00000351842 RNASE7Q9H1E1 156 aaKnown RBP6.83□□□□□ -1.32
USP4-202ENST00000351842 PSG8Q9UQ74 426 aa6.83□□□□□ -1.32
USP4-202ENST00000351842 ZFP30Q9Y2G7 519 aa6.83□□□□□ -1.32
USP4-202ENST00000351842 SOCS3O14543 225 aa6.83□□□□□ -1.32
USP4-202ENST00000351842 CCL25O15444 150 aa6.83□□□□□ -1.32
USP4-202ENST00000351842 ALKBH7Q9BT30 221 aaPredicted RBP6.83□□□□□ -1.32
USP4-202ENST00000351842 MCRIP2Q9BUT9 160 aaKnown RBP6.83□□□□□ -1.32
USP4-202ENST00000351842 URGCP-MRPS24S4R325 110 aa6.83□□□□□ -1.32
USP4-202ENST00000351842 ARL2-SNX15V9GYD0 113 aa6.83□□□□□ -1.32
USP4-202ENST00000351842 PDE6HQ13956 83 aa6.82□□□□□ -1.32
USP4-202ENST00000351842 DEFB135Q30KP9 77 aa6.82□□□□□ -1.32
USP4-202ENST00000351842 BTF3L4Q96K17 158 aa6.82□□□□□ -1.32
USP4-202ENST00000351842 GRIFINA4D1Z8 144 aa6.82□□□□□ -1.32
USP4-202ENST00000351842 ORM1P02763 201 aa6.82□□□□□ -1.32
USP4-202ENST00000351842 WDR73Q6P4I2 378 aa6.82□□□□□ -1.32
USP4-202ENST00000351842 WFDC9Q8NEX5 89 aa6.82□□□□□ -1.32
USP4-202ENST00000351842 OCC1Q8TAD7 63 aa6.82□□□□□ -1.32
USP4-202ENST00000351842 CT45A10P0DMU9 189 aa6.81□□□□□ -1.32
USP4-202ENST00000351842 C11orf52Q96A22 123 aa6.81□□□□□ -1.32
USP4-202ENST00000351842 RETNQ9HD89 108 aa6.81□□□□□ -1.32
USP4-202ENST00000351842 LY96Q9Y6Y9 160 aa6.81□□□□□ -1.32
USP4-202ENST00000351842 TRAV9-1A0A075B6T8 112 aa6.81□□□□□ -1.32
USP4-202ENST00000351842 IGHV4-30-4P0DP06 118 aa6.81□□□□□ -1.32
USP4-202ENST00000351842 PRR9Q5T870 116 aa6.81□□□□□ -1.32
USP4-202ENST00000351842 LINC01551Q86U37 167 aa6.81□□□□□ -1.32
USP4-202ENST00000351842 NDFIP1Q9BT67 221 aa6.81□□□□□ -1.32
USP4-202ENST00000351842 COL7A1Q02388 2944 aa6.81□□□□□ -1.32
USP4-202ENST00000351842 A0A087X0K7 114 aa6.8□□□□□ -1.32
USP4-202ENST00000351842 A0A0J9YX75 114 aa6.8□□□□□ -1.32
USP4-202ENST00000351842 H7BYZ3 331 aa6.8□□□□□ -1.32
USP4-202ENST00000351842 INSL3P51460 131 aa6.8□□□□□ -1.32
USP4-202ENST00000351842 TENM2Q9NT68 2774 aa6.8□□□□□ -1.32
USP4-202ENST00000351842 RBMY1BA6NDE4 496 aaKnown RBP6.8□□□□□ -1.32
USP4-202ENST00000351842 RBMY1EA6NEQ0 496 aaKnown RBP6.8□□□□□ -1.32
USP4-202ENST00000351842 AMBPP02760 352 aa6.8□□□□□ -1.32
USP4-202ENST00000351842 RBMY1DP0C7P1 496 aaKnown RBP6.8□□□□□ -1.32
USP4-202ENST00000351842 ZNF80P51504 273 aaPredicted RBP6.8□□□□□ -1.32
USP4-202ENST00000351842 ZNF138P52744 262 aa6.8□□□□□ -1.32
USP4-202ENST00000351842 Q86TA4 180 aa6.8□□□□□ -1.32
USP4-202ENST00000351842 ZC2HC1AQ96GY0 325 aa6.8□□□□□ -1.32
USP4-202ENST00000351842 H3BMM0 161 aa6.8□□□□□ -1.32
USP4-202ENST00000351842 DAZAP1Q96EP5 407 aaKnown RBP6.8□□□□□ -1.32
USP4-202ENST00000351842 COL5A1-AS1Q5SY13 56 aa6.79□□□□□ -1.32
USP4-202ENST00000351842 LINC00322Q6ZN03 302 aaPredicted RBP6.79□□□□□ -1.32
USP4-202ENST00000351842 ESDP10768 282 aa6.79□□□□□ -1.32
USP4-202ENST00000351842 MRPL52Q86TS9 123 aaKnown RBP6.79□□□□□ -1.32
USP4-202ENST00000351842 LINC01587Q99440 93 aa6.79□□□□□ -1.32
USP4-202ENST00000351842 MUC4Q99102 2169 aa6.79□□□□□ -1.32
USP4-202ENST00000351842 C9JCJ5 164 aa6.78□□□□□ -1.32
USP4-202ENST00000351842 K7EN84 100 aa6.78□□□□□ -1.32
USP4-202ENST00000351842 FOXI2Q6ZQN5 318 aa6.78□□□□□ -1.32
USP4-202ENST00000351842 LYPD1Q8N2G4 141 aa6.78□□□□□ -1.32
USP4-202ENST00000351842 IGLV2-11P01706 119 aa6.78□□□□□ -1.32
USP4-202ENST00000351842 FBN3Q75N90 2809 aa6.78□□□□□ -1.32
USP4-202ENST00000351842 TRAV25A0A0B4J276 109 aa6.78□□□□□ -1.32
USP4-202ENST00000351842 HLA-DRB4P13762 266 aa6.78□□□□□ -1.32
USP4-202ENST00000351842 IQCJQ1A5X6 159 aa6.78□□□□□ -1.32
USP4-202ENST00000351842 KCNIP4Q6PIL6 250 aa6.78□□□□□ -1.32
USP4-202ENST00000351842 SIGLEC8Q9NYZ4 499 aa6.78□□□□□ -1.32
USP4-202ENST00000351842 TP53TG3Q9ULZ0 132 aa6.78□□□□□ -1.32
USP4-202ENST00000351842 HLA-DRB4X5D2U9 266 aa6.78□□□□□ -1.32
USP4-202ENST00000351842 SERTM2A0A1B0GWG4 89 aa6.77□□□□□ -1.33
USP4-202ENST00000351842 FRMD6-AS1P0C7T7 363 aa6.77□□□□□ -1.33
USP4-202ENST00000351842 TMEM183BQ1AE95 376 aa6.77□□□□□ -1.33
USP4-202ENST00000351842 BEAN1Q3B7T3 259 aa6.77□□□□□ -1.33
USP4-202ENST00000351842 Q8N1Y9 231 aa6.77□□□□□ -1.33
USP4-202ENST00000351842 OR2D3Q8NGH3 330 aa6.77□□□□□ -1.33
USP4-202ENST00000351842 ZNF492Q9P255 531 aa6.77□□□□□ -1.33
USP4-202ENST00000351842 KIR2DL5BA0A0G2JN68 375 aa6.77□□□□□ -1.33
USP4-202ENST00000351842 KIR2DL5BA0A0G2JPC4 375 aa6.77□□□□□ -1.33
USP4-202ENST00000351842 S100A4P26447 101 aaKnown RBP6.77□□□□□ -1.33
USP4-202ENST00000351842 KIR2DL5AQ8N109 375 aa6.77□□□□□ -1.33
USP4-202ENST00000351842 FMC1Q96HJ9 113 aa6.77□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 74.8 ms