RNA–Protein interactions for RNA: ENST00000347401.7

COL6A3-202, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,625 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-202ENST00000347401 SPRR3Q9UBC9 169 aa10.66□□□□□ -0.7
COL6A3-202ENST00000347401 LCNL1Q6ZST4 164 aa10.66□□□□□ -0.7
COL6A3-202ENST00000347401 A0A087WWL8 130 aa10.66□□□□□ -0.7
COL6A3-202ENST00000347401 CCL25O15444 150 aa10.66□□□□□ -0.7
COL6A3-202ENST00000347401 NDUFC1O43677 76 aa10.66□□□□□ -0.7
COL6A3-202ENST00000347401 NDUFB1O75438 58 aa10.66□□□□□ -0.7
COL6A3-202ENST00000347401 MRPL23Q16540 153 aaKnown RBP10.66□□□□□ -0.7
COL6A3-202ENST00000347401 C8orf86Q6ZUL3 223 aa10.66□□□□□ -0.7
COL6A3-202ENST00000347401 VSIG2Q96IQ7 327 aa10.66□□□□□ -0.7
COL6A3-202ENST00000347401 A0A1W2PRX2 142 aa10.66□□□□□ -0.7
COL6A3-202ENST00000347401 TRAV3A0A0B4J244 114 aa10.66□□□□□ -0.7
COL6A3-202ENST00000347401 A0A1B0GX51 115 aa10.66□□□□□ -0.7
COL6A3-202ENST00000347401 MBD3L4A6NDZ8 208 aaPredicted RBP10.66□□□□□ -0.7
COL6A3-202ENST00000347401 MBD3L3A6NE82 208 aaPredicted RBP10.66□□□□□ -0.7
COL6A3-202ENST00000347401 MBD3L5A6NJ08 208 aaPredicted RBP10.66□□□□□ -0.7
COL6A3-202ENST00000347401 UBE2E1P51965 193 aa10.66□□□□□ -0.7
COL6A3-202ENST00000347401 MBD3L2Q8NHZ7 208 aaPredicted RBP10.66□□□□□ -0.7
COL6A3-202ENST00000347401 SAP30O75446 220 aa10.66□□□□□ -0.7
COL6A3-202ENST00000347401 IGKV1-16P04430 117 aa10.66□□□□□ -0.7
COL6A3-202ENST00000347401 Q6ZRM9 215 aa10.65□□□□□ -0.7
COL6A3-202ENST00000347401 FXYD5Q96DB9 178 aa10.65□□□□□ -0.7
COL6A3-202ENST00000347401 V9GYY9 64 aa10.65□□□□□ -0.7
COL6A3-202ENST00000347401 TEX48A0A1B0GUV7 120 aa10.65□□□□□ -0.7
COL6A3-202ENST00000347401 TMEM256-PLSCR3K7ERE1 68 aa10.65□□□□□ -0.7
COL6A3-202ENST00000347401 CYYR1Q96J86 154 aa10.65□□□□□ -0.7
COL6A3-202ENST00000347401 MUSTN1Q8IVN3 82 aa10.65□□□□□ -0.7
COL6A3-202ENST00000347401 IGKV1D-17A0A075B6S4 117 aa10.65□□□□□ -0.7
COL6A3-202ENST00000347401 DAZ2Q13117 558 aaKnown RBP10.65□□□□□ -0.7
COL6A3-202ENST00000347401 DAZ4Q86SG3 579 aaKnown RBP10.65□□□□□ -0.7
COL6A3-202ENST00000347401 DAZ3Q9NR90 486 aaKnown RBP10.65□□□□□ -0.7
COL6A3-202ENST00000347401 COL4A1P02462 1669 aa10.65□□□□□ -0.71
COL6A3-202ENST00000347401 FGFBP3Q8TAT2 258 aa10.65□□□□□ -0.71
COL6A3-202ENST00000347401 FAM236AA0A1B0GUQ0 79 aa10.64□□□□□ -0.71
COL6A3-202ENST00000347401 FAM236BA0A1B0GV22 79 aa10.64□□□□□ -0.71
COL6A3-202ENST00000347401 PROP1O75360 226 aa10.64□□□□□ -0.71
COL6A3-202ENST00000347401 PIFOQ8TCI5 191 aa10.64□□□□□ -0.71
COL6A3-202ENST00000347401 HIVEP2P31629 2446 aa10.64□□□□□ -0.71
COL6A3-202ENST00000347401 C5orf63A6NC05 138 aa10.64□□□□□ -0.71
COL6A3-202ENST00000347401 ICOSQ9Y6W8 199 aa10.64□□□□□ -0.71
COL6A3-202ENST00000347401 C22orf46C9J442 243 aa10.64□□□□□ -0.71
COL6A3-202ENST00000347401 TFF2Q03403 129 aa10.64□□□□□ -0.71
COL6A3-202ENST00000347401 SLX1AQ9BQ83 275 aa10.64□□□□□ -0.71
COL6A3-202ENST00000347401 CXCL5P42830 114 aa10.64□□□□□ -0.71
COL6A3-202ENST00000347401 PSMB8P28062 276 aa10.63□□□□□ -0.71
COL6A3-202ENST00000347401 IGHV3OR16-10A0A075B7F0 116 aa10.63□□□□□ -0.71
COL6A3-202ENST00000347401 C14orf132Q9NPU4 83 aa10.63□□□□□ -0.71
COL6A3-202ENST00000347401 VOPP1Q96AW1 172 aa10.63□□□□□ -0.71
COL6A3-202ENST00000347401 ZC2HC1AQ96GY0 325 aa10.63□□□□□ -0.71
COL6A3-202ENST00000347401 CSRP1P21291 193 aaKnown RBP10.63□□□□□ -0.71
COL6A3-202ENST00000347401 LINC01620Q4KN68 170 aa10.63□□□□□ -0.71
COL6A3-202ENST00000347401 HIVEP3Q5T1R4 2406 aa10.63□□□□□ -0.71
COL6A3-202ENST00000347401 IGLC1P0CG04 106 aa10.62□□□□□ -0.71
COL6A3-202ENST00000347401 LINC00479Q96M42 142 aa10.62□□□□□ -0.71
COL6A3-202ENST00000347401 TMEM213A2RRL7 107 aa10.62□□□□□ -0.71
COL6A3-202ENST00000347401 UQCRQO14949 82 aa10.62□□□□□ -0.71
COL6A3-202ENST00000347401 OPRPNQ99935 248 aaPredicted RBP10.62□□□□□ -0.71
COL6A3-202ENST00000347401 FOXI1Q12951 378 aa10.62□□□□□ -0.71
COL6A3-202ENST00000347401 CR1LQ2VPA4 569 aa10.62□□□□□ -0.71
COL6A3-202ENST00000347401 C17orf82Q86X59 251 aaPredicted RBP10.62□□□□□ -0.71
COL6A3-202ENST00000347401 NTN5Q8WTR8 489 aaPredicted RBP10.62□□□□□ -0.71
COL6A3-202ENST00000347401 C10orf55Q5SWW7 151 aa10.62□□□□□ -0.71
COL6A3-202ENST00000347401 A0A087WV48 116 aa10.62□□□□□ -0.71
COL6A3-202ENST00000347401 PFN2P35080 140 aa10.61□□□□□ -0.71
COL6A3-202ENST00000347401 Q8NFD4 153 aa10.61□□□□□ -0.71
COL6A3-202ENST00000347401 K7ERJ3 54 aa10.61□□□□□ -0.71
COL6A3-202ENST00000347401 FXYD7P58549 80 aa10.61□□□□□ -0.71
COL6A3-202ENST00000347401 LINC01356Q8N9X3 169 aa10.61□□□□□ -0.71
COL6A3-202ENST00000347401 UBE2BP63146 152 aa10.61□□□□□ -0.71
COL6A3-202ENST00000347401 IMUPQ9GZP8 106 aa10.61□□□□□ -0.71
COL6A3-202ENST00000347401 LINC00643Q86TS7 51 aa10.61□□□□□ -0.71
COL6A3-202ENST00000347401 IGLL5B9A064 214 aa10.61□□□□□ -0.71
COL6A3-202ENST00000347401 ZFP2Q6ZN57 461 aa10.61□□□□□ -0.71
COL6A3-202ENST00000347401 J3QLI3 93 aa10.61□□□□□ -0.71
COL6A3-202ENST00000347401 C8orf49Q96NF6 230 aa10.61□□□□□ -0.71
COL6A3-202ENST00000347401 TEX36Q5VZQ5 186 aa10.6□□□□□ -0.71
COL6A3-202ENST00000347401 A0A0G2JRQ6 117 aa10.6□□□□□ -0.71
COL6A3-202ENST00000347401 KLHL30-AS1Q8NEE0 82 aa10.6□□□□□ -0.71
COL6A3-202ENST00000347401 TINCRA0A1B0GVN0 87 aa10.6□□□□□ -0.71
COL6A3-202ENST00000347401 PRR15LQ9BU68 103 aa10.6□□□□□ -0.71
COL6A3-202ENST00000347401 SAA4P35542 130 aa10.6□□□□□ -0.71
COL6A3-202ENST00000347401 H3BUX3 64 aa10.59□□□□□ -0.71
COL6A3-202ENST00000347401 LHBP01229 141 aa10.59□□□□□ -0.71
COL6A3-202ENST00000347401 CD59P13987 128 aa10.59□□□□□ -0.71
COL6A3-202ENST00000347401 NDPQ00604 133 aa10.59□□□□□ -0.71
COL6A3-202ENST00000347401 MED14OSP0DP75 135 aa10.59□□□□□ -0.71
COL6A3-202ENST00000347401 KAAG1Q9UBP8 84 aa10.59□□□□□ -0.71
COL6A3-202ENST00000347401 COL5A1P20908 1838 aaPredicted RBP10.58□□□□□ -0.72
COL6A3-202ENST00000347401 PRSS29PA6NIE9 313 aa10.58□□□□□ -0.72
COL6A3-202ENST00000347401 SPATA12Q7Z6I5 190 aa10.58□□□□□ -0.72
COL6A3-202ENST00000347401 UBE2E2Q96LR5 201 aa10.58□□□□□ -0.72
COL6A3-202ENST00000347401 LRRK2Q5S007 2527 aa10.58□□□□□ -0.72
COL6A3-202ENST00000347401 ZNF726P1Q15940 193 aa10.58□□□□□ -0.72
COL6A3-202ENST00000347401 TRBV10-2A0A0K0K1G8 114 aa10.58□□□□□ -0.72
COL6A3-202ENST00000347401 EFNA2O43921 213 aa10.58□□□□□ -0.72
COL6A3-202ENST00000347401 HIGD2BQ4VC39 106 aa10.58□□□□□ -0.72
COL6A3-202ENST00000347401 LTBRP36941 435 aa10.58□□□□□ -0.72
COL6A3-202ENST00000347401 FOXE3Q13461 319 aa10.58□□□□□ -0.72
COL6A3-202ENST00000347401 A0A1B0GUS0 222 aa10.57□□□□□ -0.72
COL6A3-202ENST00000347401 DAD1P61803 113 aa10.57□□□□□ -0.72
COL6A3-202ENST00000347401 MCRIP2Q9BUT9 160 aaKnown RBP10.57□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms