RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 VMO1Q7Z5L0 202 aa17.14■□□□□ 0.33
TRIM28-202ENST00000341753 MAP1AP78559 2803 aaPredicted RBP17.13■□□□□ 0.33
TRIM28-202ENST00000341753 TMEM78Q5T7P6 136 aa17.13■□□□□ 0.33
TRIM28-202ENST00000341753 CLEC19AQ6UXS0 136 aa17.13■□□□□ 0.33
TRIM28-202ENST00000341753 CHTOPQ9Y3Y2 248 aaKnown RBP17.13■□□□□ 0.33
TRIM28-202ENST00000341753 SCGB2A1O75556 95 aa17.13■□□□□ 0.33
TRIM28-202ENST00000341753 ATP5G2Q06055 141 aa17.13■□□□□ 0.33
TRIM28-202ENST00000341753 RRN3P1Q2M238 152 aa17.13■□□□□ 0.33
TRIM28-202ENST00000341753 GAGE13Q4V321 117 aa17.13■□□□□ 0.33
TRIM28-202ENST00000341753 TRAV8-2A0A0B4J237 113 aa17.12■□□□□ 0.33
TRIM28-202ENST00000341753 IGF1P05019 195 aa17.12■□□□□ 0.33
TRIM28-202ENST00000341753 TRBV7-3A0A075B6L6 115 aa17.12■□□□□ 0.33
TRIM28-202ENST00000341753 CLPSL1A2RUU4 121 aa17.12■□□□□ 0.33
TRIM28-202ENST00000341753 PRTN3P24158 256 aa17.12■□□□□ 0.33
TRIM28-202ENST00000341753 CCDC144NLQ6NUI1 221 aa17.12■□□□□ 0.33
TRIM28-202ENST00000341753 DEFB104AQ8WTQ1 72 aa17.12■□□□□ 0.33
TRIM28-202ENST00000341753 HLA-DRB4P13762 266 aa17.11■□□□□ 0.33
TRIM28-202ENST00000341753 PLNP26678 52 aa17.11■□□□□ 0.33
TRIM28-202ENST00000341753 ZNF502Q8TBZ5 544 aa17.11■□□□□ 0.33
TRIM28-202ENST00000341753 HLA-DRB4X5D2U9 266 aa17.11■□□□□ 0.33
TRIM28-202ENST00000341753 PRR9Q5T870 116 aa17.11■□□□□ 0.33
TRIM28-202ENST00000341753 OR11H12B2RN74 326 aa17.1■□□□□ 0.33
TRIM28-202ENST00000341753 OR11H1Q8NG94 326 aa17.1■□□□□ 0.33
TRIM28-202ENST00000341753 OR11H2Q8NH07 326 aa17.1■□□□□ 0.33
TRIM28-202ENST00000341753 G3V318 75 aa17.1■□□□□ 0.33
TRIM28-202ENST00000341753 M0R381 172 aa17.1■□□□□ 0.33
TRIM28-202ENST00000341753 Q8N6K4 173 aa17.1■□□□□ 0.33
TRIM28-202ENST00000341753 TIMD4Q96H15 378 aa17.1■□□□□ 0.33
TRIM28-202ENST00000341753 SCGB3A1Q96QR1 104 aa17.1■□□□□ 0.33
TRIM28-202ENST00000341753 MYMXA0A1B0GTQ4 84 aa17.09■□□□□ 0.33
TRIM28-202ENST00000341753 F8VRH5 84 aa17.09■□□□□ 0.33
TRIM28-202ENST00000341753 H7C1H1 209 aa17.09■□□□□ 0.33
TRIM28-202ENST00000341753 J3QR89 54 aa17.09■□□□□ 0.33
TRIM28-202ENST00000341753 TAL2Q16559 108 aa17.09■□□□□ 0.33
TRIM28-202ENST00000341753 C11orf71Q6IPW1 123 aa17.09■□□□□ 0.33
TRIM28-202ENST00000341753 PRO0461Q9UI25 63 aa17.09■□□□□ 0.33
TRIM28-202ENST00000341753 A0A1B0GWB2 263 aa17.09■□□□□ 0.33
TRIM28-202ENST00000341753 RBAKDNA6NC62 111 aa17.09■□□□□ 0.33
TRIM28-202ENST00000341753 LINC01548A6NM66 108 aa17.09■□□□□ 0.33
TRIM28-202ENST00000341753 ZFP36P26651 326 aaKnown RBP17.09■□□□□ 0.33
TRIM28-202ENST00000341753 C8orf86Q6ZUL3 223 aa17.09■□□□□ 0.33
TRIM28-202ENST00000341753 Q8N9W7 124 aa17.09■□□□□ 0.33
TRIM28-202ENST00000341753 RPL39LQ96EH5 51 aaKnown RBP17.09■□□□□ 0.33
TRIM28-202ENST00000341753 SMIM2Q9BVW6 85 aa17.09■□□□□ 0.33
TRIM28-202ENST00000341753 ATP6V0E1O15342 81 aa17.08■□□□□ 0.32
TRIM28-202ENST00000341753 DEFB1P60022 68 aa17.08■□□□□ 0.32
TRIM28-202ENST00000341753 CCDC140Q96MF4 163 aa17.08■□□□□ 0.32
TRIM28-202ENST00000341753 SLC50A1Q9BRV3 221 aa17.08■□□□□ 0.32
TRIM28-202ENST00000341753 MORN3Q6PF18 240 aaPredicted RBP17.07■□□□□ 0.32
TRIM28-202ENST00000341753 PGPEP1Q9NXJ5 209 aa17.07■□□□□ 0.32
TRIM28-202ENST00000341753 UCNP55089 124 aa17.07■□□□□ 0.32
TRIM28-202ENST00000341753 HIF1ANQ9NWT6 349 aa17.07■□□□□ 0.32
TRIM28-202ENST00000341753 LGALS1P09382 135 aaKnown RBP17.06■□□□□ 0.32
TRIM28-202ENST00000341753 SCGB2A2Q13296 93 aa17.06■□□□□ 0.32
TRIM28-202ENST00000341753 M0R1W7 72 aa17.06■□□□□ 0.32
TRIM28-202ENST00000341753 SPATA25Q9BR10 227 aa17.06■□□□□ 0.32
TRIM28-202ENST00000341753 C20orf78Q9BR46 151 aa17.06■□□□□ 0.32
TRIM28-202ENST00000341753 WFDC12Q8WWY7 111 aa17.05■□□□□ 0.32
TRIM28-202ENST00000341753 PRSS47A8MTI9 375 aa17.05■□□□□ 0.32
TRIM28-202ENST00000341753 C14orf178Q8N769 122 aaPredicted RBP17.05■□□□□ 0.32
TRIM28-202ENST00000341753 PLEKHB2Q96CS7 222 aa17.05■□□□□ 0.32
TRIM28-202ENST00000341753 MRPL16Q9NX20 251 aaKnown RBP17.05■□□□□ 0.32
TRIM28-202ENST00000341753 HOXA3O43365 443 aaPredicted RBP17.04■□□□□ 0.32
TRIM28-202ENST00000341753 PRADC1Q9BSG0 188 aa17.04■□□□□ 0.32
TRIM28-202ENST00000341753 NDUFS8O00217 210 aa17.04■□□□□ 0.32
TRIM28-202ENST00000341753 MGPP08493 103 aa17.04■□□□□ 0.32
TRIM28-202ENST00000341753 RASL10AQ92737 203 aa17.04■□□□□ 0.32
TRIM28-202ENST00000341753 UBTD1Q9HAC8 227 aa17.04■□□□□ 0.32
TRIM28-202ENST00000341753 APOMO95445 188 aa17.03■□□□□ 0.32
TRIM28-202ENST00000341753 SCGB1A1P11684 91 aa17.03■□□□□ 0.32
TRIM28-202ENST00000341753 EMP1P54849 157 aa17.03■□□□□ 0.32
TRIM28-202ENST00000341753 FAM110DQ8TAY7 271 aaPredicted RBP17.03■□□□□ 0.32
TRIM28-202ENST00000341753 SUMO2P61956 95 aaKnown RBP17.03■□□□□ 0.32
TRIM28-202ENST00000341753 NEXN-AS1Q8NBZ9 246 aa17.03■□□□□ 0.32
TRIM28-202ENST00000341753 C16orf92Q96LL3 132 aa17.03■□□□□ 0.32
TRIM28-202ENST00000341753 KLHL30-AS1Q8NEE0 82 aa17.02■□□□□ 0.32
TRIM28-202ENST00000341753 C20orf173Q96LM9 149 aa17.02■□□□□ 0.32
TRIM28-202ENST00000341753 ATP6V0BQ99437 205 aa17.02■□□□□ 0.32
TRIM28-202ENST00000341753 TRAV12-1A0A0B4J245 112 aa17.02■□□□□ 0.31
TRIM28-202ENST00000341753 LINC01549A6NIU2 74 aa17.02■□□□□ 0.31
TRIM28-202ENST00000341753 ZNF815PA8K554 130 aa17.02■□□□□ 0.31
TRIM28-202ENST00000341753 SCGB1D4Q6XE38 83 aa17.02■□□□□ 0.31
TRIM28-202ENST00000341753 METTL26Q96S19 204 aa17.02■□□□□ 0.31
TRIM28-202ENST00000341753 LOC107984156A0A0G2JMH3 177 aa17.01■□□□□ 0.31
TRIM28-202ENST00000341753 ARL17AQ8IVW1 177 aa17.01■□□□□ 0.31
TRIM28-202ENST00000341753 BAALCQ8WXS3 180 aa17.01■□□□□ 0.31
TRIM28-202ENST00000341753 TOMM6Q96B49 74 aa17.01■□□□□ 0.31
TRIM28-202ENST00000341753 SLC25A16P16260 332 aa17.01■□□□□ 0.31
TRIM28-202ENST00000341753 RAB9AP51151 201 aa17.01■□□□□ 0.31
TRIM28-202ENST00000341753 C2orf66Q6UXQ4 117 aa17.01■□□□□ 0.31
TRIM28-202ENST00000341753 LINC00527Q9UJ94 153 aa17.01■□□□□ 0.31
TRIM28-202ENST00000341753 PRSS29PA6NIE9 313 aa17■□□□□ 0.31
TRIM28-202ENST00000341753 MRAP2Q96G30 205 aa17■□□□□ 0.31
TRIM28-202ENST00000341753 S100A4P26447 101 aaKnown RBP17■□□□□ 0.31
TRIM28-202ENST00000341753 SMCPP49901 116 aaPredicted RBP17■□□□□ 0.31
TRIM28-202ENST00000341753 EBI3Q14213 229 aa17■□□□□ 0.31
TRIM28-202ENST00000341753 ZFP2Q6ZN57 461 aa17■□□□□ 0.31
TRIM28-202ENST00000341753 C9orf47Q6ZRZ4 202 aa17■□□□□ 0.31
TRIM28-202ENST00000341753 ZNF418Q8TF45 676 aaPredicted RBP17■□□□□ 0.31
TRIM28-202ENST00000341753 IGHV4-4A0A075B6R2 117 aa16.99■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms