RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 C1orf229Q6ZS94 237 aaPredicted RBP7.77□□□□□ -1.17
USP54-201ENST00000339859 C11orf52Q96A22 123 aa7.77□□□□□ -1.17
USP54-201ENST00000339859 AMN1Q8IY45 258 aa7.77□□□□□ -1.17
USP54-201ENST00000339859 FREM1Q5H8C1 2179 aa7.77□□□□□ -1.17
USP54-201ENST00000339859 KLF5Q13887 457 aaPredicted RBP7.77□□□□□ -1.17
USP54-201ENST00000339859 CHD3Q12873 2000 aaKnown RBP7.77□□□□□ -1.17
USP54-201ENST00000339859 P0C879 139 aa7.77□□□□□ -1.17
USP54-201ENST00000339859 SMIM6P0DI80 62 aa7.77□□□□□ -1.17
USP54-201ENST00000339859 SLC25A34Q6PIV7 304 aa7.77□□□□□ -1.17
USP54-201ENST00000339859 PRO1933Q9H354 126 aa7.77□□□□□ -1.17
USP54-201ENST00000339859 ZNF561-AS1K7EIQ3 104 aa7.76□□□□□ -1.17
USP54-201ENST00000339859 HLA-DRB4P13762 266 aa7.76□□□□□ -1.17
USP54-201ENST00000339859 HLA-DRB4X5D2U9 266 aa7.76□□□□□ -1.17
USP54-201ENST00000339859 TNFRSF6BO95407 300 aa7.76□□□□□ -1.17
USP54-201ENST00000339859 PATE2Q6UY27 113 aa7.76□□□□□ -1.17
USP54-201ENST00000339859 CYYR1Q96J86 154 aa7.76□□□□□ -1.17
USP54-201ENST00000339859 DNAJC30Q96LL9 226 aa7.76□□□□□ -1.17
USP54-201ENST00000339859 C11orf68Q9H3H3 251 aaKnown RBP7.76□□□□□ -1.17
USP54-201ENST00000339859 J3QR89 54 aa7.76□□□□□ -1.17
USP54-201ENST00000339859 K7EQD1 137 aa7.76□□□□□ -1.17
USP54-201ENST00000339859 GNRH2O43555 120 aa7.76□□□□□ -1.17
USP54-201ENST00000339859 IGKCP01834 107 aa7.76□□□□□ -1.17
USP54-201ENST00000339859 KIAA1549Q9HCM3 1950 aa7.76□□□□□ -1.17
USP54-201ENST00000339859 TMEM213A2RRL7 107 aa7.76□□□□□ -1.17
USP54-201ENST00000339859 SMIM9A6NGZ8 99 aa7.76□□□□□ -1.17
USP54-201ENST00000339859 C11orf45Q8TAV5 145 aa7.76□□□□□ -1.17
USP54-201ENST00000339859 TMEM141Q96I45 108 aa7.76□□□□□ -1.17
USP54-201ENST00000339859 CADP27708 2225 aa7.75□□□□□ -1.17
USP54-201ENST00000339859 A0A096LPF7 62 aa7.75□□□□□ -1.17
USP54-201ENST00000339859 GAGE6Q13070 117 aa7.75□□□□□ -1.17
USP54-201ENST00000339859 DMRT1Q9Y5R6 373 aa7.75□□□□□ -1.17
USP54-201ENST00000339859 TRBV24-1A0A075B6N3 115 aa7.75□□□□□ -1.17
USP54-201ENST00000339859 H7C2G1 150 aa7.75□□□□□ -1.17
USP54-201ENST00000339859 Q6ZPA2 131 aa7.75□□□□□ -1.17
USP54-201ENST00000339859 IGLV1-40P01703 118 aa7.75□□□□□ -1.17
USP54-201ENST00000339859 IFI27L1Q96BM0 104 aa7.75□□□□□ -1.17
USP54-201ENST00000339859 PLEKHB2Q96CS7 222 aa7.75□□□□□ -1.17
USP54-201ENST00000339859 TRAV13-1A0A0B4J241 112 aa7.75□□□□□ -1.17
USP54-201ENST00000339859 A0A0J9YX75 114 aa7.75□□□□□ -1.17
USP54-201ENST00000339859 SERF1AO75920 110 aa7.75□□□□□ -1.17
USP54-201ENST00000339859 FAM104BQ5XKR9 115 aa7.75□□□□□ -1.17
USP54-201ENST00000339859 ROS1P08922 2347 aa7.75□□□□□ -1.17
USP54-201ENST00000339859 TMEM263Q8WUH6 116 aaKnown RBP7.74□□□□□ -1.17
USP54-201ENST00000339859 ODF3Q96PU9 254 aa7.74□□□□□ -1.17
USP54-201ENST00000339859 SMKR1H3BMG3 65 aa7.74□□□□□ -1.17
USP54-201ENST00000339859 LINC00158P58513 81 aa7.74□□□□□ -1.17
USP54-201ENST00000339859 PROP1O75360 226 aa7.74□□□□□ -1.17
USP54-201ENST00000339859 GHRHP01286 108 aa7.74□□□□□ -1.17
USP54-201ENST00000339859 C6orf226Q5I0X4 101 aa7.74□□□□□ -1.17
USP54-201ENST00000339859 FAM19A2Q8N3H0 131 aa7.74□□□□□ -1.17
USP54-201ENST00000339859 GYPEP15421 78 aa7.74□□□□□ -1.17
USP54-201ENST00000339859 Q8N8P6 123 aa7.74□□□□□ -1.17
USP54-201ENST00000339859 RAI1Q7Z5J4 1906 aaPredicted RBP7.74□□□□□ -1.17
USP54-201ENST00000339859 TYMSP04818 313 aa7.73□□□□□ -1.17
USP54-201ENST00000339859 SMIM27A0A1W2PRY6 76 aa7.73□□□□□ -1.17
USP54-201ENST00000339859 CUL9Q8IWT3 2517 aa7.73□□□□□ -1.17
USP54-201ENST00000339859 IGHV3-38A0A0C4DH36 116 aa7.73□□□□□ -1.17
USP54-201ENST00000339859 SDHAF1A6NFY7 115 aa7.73□□□□□ -1.17
USP54-201ENST00000339859 C10orf99Q6UWK7 81 aa7.73□□□□□ -1.17
USP54-201ENST00000339859 DEFB104AQ8WTQ1 72 aa7.73□□□□□ -1.17
USP54-201ENST00000339859 UQCR10Q9UDW1 63 aa7.73□□□□□ -1.17
USP54-201ENST00000339859 BRWD1-AS2P59051 145 aa7.73□□□□□ -1.17
USP54-201ENST00000339859 MRPL36Q9P0J6 103 aaKnown RBP7.73□□□□□ -1.17
USP54-201ENST00000339859 ANGP03950 147 aaKnown RBP7.72□□□□□ -1.17
USP54-201ENST00000339859 ZNF747Q9BV97 191 aa7.72□□□□□ -1.17
USP54-201ENST00000339859 SLC25A20O43772 301 aa7.72□□□□□ -1.17
USP54-201ENST00000339859 SIGLEC8Q9NYZ4 499 aa7.72□□□□□ -1.17
USP54-201ENST00000339859 SPTBN1Q01082 2364 aaKnown RBP7.72□□□□□ -1.17
USP54-201ENST00000339859 NBASA2RRP1 2371 aa7.72□□□□□ -1.17
USP54-201ENST00000339859 PLNP26678 52 aa7.72□□□□□ -1.17
USP54-201ENST00000339859 PAX2Q02962 417 aa7.72□□□□□ -1.17
USP54-201ENST00000339859 ADAMTSL5Q6ZMM2 481 aa7.72□□□□□ -1.17
USP54-201ENST00000339859 ATP6V0E2Q8NHE4 81 aa7.72□□□□□ -1.17
USP54-201ENST00000339859 IGLC2P0DOY2 106 aa7.72□□□□□ -1.17
USP54-201ENST00000339859 MED14OSP0DP75 135 aa7.72□□□□□ -1.17
USP54-201ENST00000339859 EGR2P11161 476 aaPredicted RBP7.72□□□□□ -1.17
USP54-201ENST00000339859 TRBV7-9A0A0J9YWB2 115 aa7.72□□□□□ -1.17
USP54-201ENST00000339859 LYRM9A8MSI8 78 aa7.72□□□□□ -1.17
USP54-201ENST00000339859 ASPHD1Q5U4P2 390 aa7.72□□□□□ -1.17
USP54-201ENST00000339859 C20orf78Q9BR46 151 aa7.72□□□□□ -1.17
USP54-201ENST00000339859 A8MWP6 167 aa7.71□□□□□ -1.17
USP54-201ENST00000339859 IGLL5B9A064 214 aa7.71□□□□□ -1.17
USP54-201ENST00000339859 K7EQG2 157 aa7.71□□□□□ -1.17
USP54-201ENST00000339859 GTF2H5Q6ZYL4 71 aa7.71□□□□□ -1.17
USP54-201ENST00000339859 TP53TG1Q9Y2A0 90 aa7.71□□□□□ -1.17
USP54-201ENST00000339859 DAZ2Q13117 558 aaKnown RBP7.71□□□□□ -1.17
USP54-201ENST00000339859 DAZ4Q86SG3 579 aaKnown RBP7.71□□□□□ -1.17
USP54-201ENST00000339859 ATOH7Q8N100 152 aa7.71□□□□□ -1.17
USP54-201ENST00000339859 DAZ3Q9NR90 486 aaKnown RBP7.71□□□□□ -1.17
USP54-201ENST00000339859 HHLA3Q9XRX5 114 aa7.71□□□□□ -1.17
USP54-201ENST00000339859 IGKV2D-24A0A075B6R9 120 aa7.71□□□□□ -1.18
USP54-201ENST00000339859 IGKV1D-37A0A075B6S9 117 aa7.71□□□□□ -1.18
USP54-201ENST00000339859 ZNF580Q9UK33 172 aa7.71□□□□□ -1.18
USP54-201ENST00000339859 V9GYV3 84 aa7.71□□□□□ -1.18
USP54-201ENST00000339859 BDP1A6H8Y1 2624 aa7.71□□□□□ -1.18
USP54-201ENST00000339859 MRPL51Q4U2R6 128 aaKnown RBP7.71□□□□□ -1.18
USP54-201ENST00000339859 S100A7L2Q5SY68 101 aa7.71□□□□□ -1.18
USP54-201ENST00000339859 MORN5Q5VZ52 161 aa7.71□□□□□ -1.18
USP54-201ENST00000339859 FAM167A-AS1Q96KT0 104 aa7.71□□□□□ -1.18
USP54-201ENST00000339859 DNAL4O96015 105 aa7.7□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 74.4 ms