RNA–Protein interactions for RNA: ENST00000335551.11

CSMD1-201, Transcript of CUB and Sushi multiple domains 1, humanhuman

TSL 1 (best)

Gene CSMD1, Length 12,134 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-201ENST00000335551 CGB3P0DN86 165 aa4.98□□□□□ -1.61
CSMD1-201ENST00000335551 C3orf36Q3SXR2 165 aa4.98□□□□□ -1.61
CSMD1-201ENST00000335551 VMO1Q7Z5L0 202 aa4.98□□□□□ -1.61
CSMD1-201ENST00000335551 JMJD7-PLA2G4BH0Y9G9 81 aa4.98□□□□□ -1.61
CSMD1-201ENST00000335551 EIF4EBP2Q13542 120 aaPredicted RBP4.98□□□□□ -1.61
CSMD1-201ENST00000335551 COLQQ9Y215 455 aaPredicted RBP4.98□□□□□ -1.61
CSMD1-201ENST00000335551 C22orf46C9J442 243 aa4.98□□□□□ -1.61
CSMD1-201ENST00000335551 ZNF134P52741 427 aa4.98□□□□□ -1.61
CSMD1-201ENST00000335551 SIGLEC9Q9Y336 463 aa4.98□□□□□ -1.61
CSMD1-201ENST00000335551 H3BT86 120 aa4.98□□□□□ -1.61
CSMD1-201ENST00000335551 IGKV3D-7A0A0C4DH55 119 aa4.98□□□□□ -1.61
CSMD1-201ENST00000335551 DAD1P61803 113 aa4.98□□□□□ -1.61
CSMD1-201ENST00000335551 RNASE6Q93091 150 aaKnown RBP4.98□□□□□ -1.61
CSMD1-201ENST00000335551 IGHV3-53P01767 116 aa4.97□□□□□ -1.61
CSMD1-201ENST00000335551 NREPQ16612 68 aa4.97□□□□□ -1.61
CSMD1-201ENST00000335551 RNASE8Q8TDE3 154 aaKnown RBP4.97□□□□□ -1.61
CSMD1-201ENST00000335551 UQCRQO14949 82 aa4.97□□□□□ -1.61
CSMD1-201ENST00000335551 RPL35AP18077 110 aaKnown RBP4.97□□□□□ -1.61
CSMD1-201ENST00000335551 LRP4O75096 1905 aa4.97□□□□□ -1.61
CSMD1-201ENST00000335551 NCOR2Q9Y618 2525 aa4.97□□□□□ -1.61
CSMD1-201ENST00000335551 FAM236DA0A1B0GTK5 79 aa4.97□□□□□ -1.61
CSMD1-201ENST00000335551 FAM236CP0DP71 79 aa4.97□□□□□ -1.61
CSMD1-201ENST00000335551 PRB4P10163 310 aaPredicted RBP4.97□□□□□ -1.61
CSMD1-201ENST00000335551 PAX9P55771 341 aa4.97□□□□□ -1.61
CSMD1-201ENST00000335551 NDPQ00604 133 aa4.97□□□□□ -1.61
CSMD1-201ENST00000335551 TRBV19A0A075B6N1 114 aa4.97□□□□□ -1.61
CSMD1-201ENST00000335551 TRAV3A0A0B4J244 114 aa4.97□□□□□ -1.61
CSMD1-201ENST00000335551 FOXF2Q12947 444 aa4.97□□□□□ -1.61
CSMD1-201ENST00000335551 LYRM9A8MSI8 78 aa4.97□□□□□ -1.61
CSMD1-201ENST00000335551 ANXA2RQ3ZCQ2 193 aa4.97□□□□□ -1.61
CSMD1-201ENST00000335551 C20orf173Q96LM9 149 aa4.97□□□□□ -1.61
CSMD1-201ENST00000335551 DKK1O94907 266 aa4.97□□□□□ -1.61
CSMD1-201ENST00000335551 Q6ZUT4 128 aa4.97□□□□□ -1.61
CSMD1-201ENST00000335551 SAP25Q8TEE9 199 aa4.97□□□□□ -1.61
CSMD1-201ENST00000335551 DEFB104AQ8WTQ1 72 aa4.97□□□□□ -1.61
CSMD1-201ENST00000335551 SH2D6Q7Z4S9 175 aa4.97□□□□□ -1.61
CSMD1-201ENST00000335551 LINC00473A8K010 186 aa4.96□□□□□ -1.61
CSMD1-201ENST00000335551 CYYR1Q96J86 154 aa4.96□□□□□ -1.61
CSMD1-201ENST00000335551 IGHV1OR15-1A0A075B7D0 117 aa4.96□□□□□ -1.61
CSMD1-201ENST00000335551 Q9H8V8 135 aa4.96□□□□□ -1.61
CSMD1-201ENST00000335551 IGKV1-27A0A075B6S5 117 aa4.96□□□□□ -1.62
CSMD1-201ENST00000335551 TRAV12-2A0A075B6T6 113 aa4.96□□□□□ -1.62
CSMD1-201ENST00000335551 NDUFC1O43677 76 aa4.96□□□□□ -1.62
CSMD1-201ENST00000335551 PRB1P04280 392 aa4.96□□□□□ -1.62
CSMD1-201ENST00000335551 DEFB130BP0DP73 79 aa4.96□□□□□ -1.62
CSMD1-201ENST00000335551 DEFB130AP0DP74 79 aa4.96□□□□□ -1.62
CSMD1-201ENST00000335551 SLC25A45Q8N413 288 aa4.96□□□□□ -1.62
CSMD1-201ENST00000335551 LINC00479Q96M42 142 aa4.96□□□□□ -1.62
CSMD1-201ENST00000335551 RHPN1-AS1Q9BWJ2 59 aa4.96□□□□□ -1.62
CSMD1-201ENST00000335551 BUB1B-PAK6H3BSN5 160 aa4.96□□□□□ -1.62
CSMD1-201ENST00000335551 VWC2Q2TAL6 325 aa4.96□□□□□ -1.62
CSMD1-201ENST00000335551 KLF2Q9Y5W3 355 aaPredicted RBP4.96□□□□□ -1.62
CSMD1-201ENST00000335551 TRAV26-2A0A0B4J265 109 aa4.96□□□□□ -1.62
CSMD1-201ENST00000335551 COA6Q5JTJ3 125 aaKnown RBP4.96□□□□□ -1.62
CSMD1-201ENST00000335551 C11orf52Q96A22 123 aa4.96□□□□□ -1.62
CSMD1-201ENST00000335551 PRDM6Q9NQX0 595 aa4.96□□□□□ -1.62
CSMD1-201ENST00000335551 A0A087WV48 116 aa4.96□□□□□ -1.62
CSMD1-201ENST00000335551 CD24P25063 80 aa4.96□□□□□ -1.62
CSMD1-201ENST00000335551 C10orf55Q5SWW7 151 aa4.96□□□□□ -1.62
CSMD1-201ENST00000335551 PCP2Q8IVA1 136 aa4.96□□□□□ -1.62
CSMD1-201ENST00000335551 SPACA3Q8IXA5 215 aa4.96□□□□□ -1.62
CSMD1-201ENST00000335551 DYNAPQ8N1N2 210 aa4.96□□□□□ -1.62
CSMD1-201ENST00000335551 TMEM200BQ69YZ2 307 aa4.96□□□□□ -1.62
CSMD1-201ENST00000335551 ZC2HC1AQ96GY0 325 aa4.96□□□□□ -1.62
CSMD1-201ENST00000335551 USP9XQ93008 2570 aaPredicted RBP4.96□□□□□ -1.62
CSMD1-201ENST00000335551 NXPH4O95158 308 aa4.96□□□□□ -1.62
CSMD1-201ENST00000335551 ZNF837Q96EG3 531 aaPredicted RBP4.96□□□□□ -1.62
CSMD1-201ENST00000335551 IGKV1-12A0A0C4DH73 117 aa4.95□□□□□ -1.62
CSMD1-201ENST00000335551 LTAP01374 205 aa4.95□□□□□ -1.62
CSMD1-201ENST00000335551 IGKV1D-12P01611 117 aa4.95□□□□□ -1.62
CSMD1-201ENST00000335551 QRFPP83859 136 aa4.95□□□□□ -1.62
CSMD1-201ENST00000335551 PIP4P2Q8N4L2 257 aa4.95□□□□□ -1.62
CSMD1-201ENST00000335551 A0A0U1RQV1 116 aa4.95□□□□□ -1.62
CSMD1-201ENST00000335551 C9JQL5 133 aa4.95□□□□□ -1.62
CSMD1-201ENST00000335551 C4orf48Q5BLP8 95 aa4.95□□□□□ -1.62
CSMD1-201ENST00000335551 LGALS9O00182 355 aa4.95□□□□□ -1.62
CSMD1-201ENST00000335551 LTBRP36941 435 aa4.95□□□□□ -1.62
CSMD1-201ENST00000335551 F5H768 121 aa4.95□□□□□ -1.62
CSMD1-201ENST00000335551 ZNF747Q9BV97 191 aa4.95□□□□□ -1.62
CSMD1-201ENST00000335551 IGHV1-46P01743 117 aa4.95□□□□□ -1.62
CSMD1-201ENST00000335551 NSUN5P1Q3KNT7 163 aa4.95□□□□□ -1.62
CSMD1-201ENST00000335551 LINC00643Q86TS7 51 aa4.95□□□□□ -1.62
CSMD1-201ENST00000335551 COX7B2Q8TF08 81 aa4.95□□□□□ -1.62
CSMD1-201ENST00000335551 UPK3BQ9BT76 320 aa4.95□□□□□ -1.62
CSMD1-201ENST00000335551 ZFHX2Q9C0A1 2572 aaPredicted RBP4.95□□□□□ -1.62
CSMD1-201ENST00000335551 ETDCA0A1B0GVM5 59 aa4.95□□□□□ -1.62
CSMD1-201ENST00000335551 Q6P435 159 aa4.95□□□□□ -1.62
CSMD1-201ENST00000335551 C10orf105Q8TEF2 133 aa4.95□□□□□ -1.62
CSMD1-201ENST00000335551 TRBV12-3P01733 135 aa4.95□□□□□ -1.62
CSMD1-201ENST00000335551 PRR25Q96S07 402 aa4.95□□□□□ -1.62
CSMD1-201ENST00000335551 ADAMTS20P59510 1910 aa4.95□□□□□ -1.62
CSMD1-201ENST00000335551 TMEM256-PLSCR3K7ERE1 68 aa4.94□□□□□ -1.62
CSMD1-201ENST00000335551 TMEM61Q8N0U2 210 aa4.94□□□□□ -1.62
CSMD1-201ENST00000335551 TMEM178BH3BS89 294 aa4.94□□□□□ -1.62
CSMD1-201ENST00000335551 FAM27E3Q08E93 113 aa4.94□□□□□ -1.62
CSMD1-201ENST00000335551 CSRP2Q16527 193 aa4.94□□□□□ -1.62
CSMD1-201ENST00000335551 C3orf22Q8N5N4 141 aa4.94□□□□□ -1.62
CSMD1-201ENST00000335551 RBAKDNA6NC62 111 aa4.94□□□□□ -1.62
CSMD1-201ENST00000335551 TMEM219Q86XT9 240 aa4.94□□□□□ -1.62
CSMD1-201ENST00000335551 TRBV10-2A0A0K0K1G8 114 aa4.94□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 53.1 ms