RNA–Protein interactions for RNA: ENST00000331433.4

CLCNKA-201, Transcript of chloride voltage-gated channel Ka, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CLCNKA, Length 2,475 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-201ENST00000331433 LINC00477Q96M19 166 aa11.25□□□□□ -0.61
CLCNKA-201ENST00000331433 MAP1LC3AQ9H492 121 aa11.25□□□□□ -0.61
CLCNKA-201ENST00000331433 PEF1Q9UBV8 284 aaKnown RBP11.25□□□□□ -0.61
CLCNKA-201ENST00000331433 UFC1Q9Y3C8 167 aa11.25□□□□□ -0.61
CLCNKA-201ENST00000331433 OVOL1O14753 267 aa11.25□□□□□ -0.61
CLCNKA-201ENST00000331433 SPRY2O43597 315 aa11.25□□□□□ -0.61
CLCNKA-201ENST00000331433 PSMB8P28062 276 aa11.25□□□□□ -0.61
CLCNKA-201ENST00000331433 KIR3DS1Q14943 382 aa11.25□□□□□ -0.61
CLCNKA-201ENST00000331433 WFDC3Q8IUB2 231 aa11.25□□□□□ -0.61
CLCNKA-201ENST00000331433 ZNF843Q8N446 348 aa11.25□□□□□ -0.61
CLCNKA-201ENST00000331433 LENEPQ9Y5L5 61 aa11.25□□□□□ -0.61
CLCNKA-201ENST00000331433 TRAV26-2A0A0B4J265 109 aa11.24□□□□□ -0.61
CLCNKA-201ENST00000331433 SPANXN1Q5VSR9 72 aa11.24□□□□□ -0.61
CLCNKA-201ENST00000331433 TENM4Q6N022 2769 aa11.24□□□□□ -0.61
CLCNKA-201ENST00000331433 TEX15Q9BXT5 2789 aa11.24□□□□□ -0.61
CLCNKA-201ENST00000331433 SMPXQ9UHP9 88 aa11.24□□□□□ -0.61
CLCNKA-201ENST00000331433 SCRT2Q9NQ03 307 aa11.23□□□□□ -0.61
CLCNKA-201ENST00000331433 NBPF19A0A087WUL8 3843 aa11.23□□□□□ -0.61
CLCNKA-201ENST00000331433 SNAI2O43623 268 aa11.23□□□□□ -0.61
CLCNKA-201ENST00000331433 CACNG7P62955 275 aa11.23□□□□□ -0.61
CLCNKA-201ENST00000331433 SLC25A34Q6PIV7 304 aa11.22□□□□□ -0.61
CLCNKA-201ENST00000331433 C18orf15Q96N68 181 aa11.22□□□□□ -0.61
CLCNKA-201ENST00000331433 TMEM208Q9BTX3 173 aa11.22□□□□□ -0.61
CLCNKA-201ENST00000331433 GOLT1BQ9Y3E0 138 aa11.22□□□□□ -0.61
CLCNKA-201ENST00000331433 CR1P17927 2039 aa11.22□□□□□ -0.61
CLCNKA-201ENST00000331433 J3QLI3 93 aa11.21□□□□□ -0.61
CLCNKA-201ENST00000331433 RNASE4P34096 147 aaKnown RBP11.21□□□□□ -0.61
CLCNKA-201ENST00000331433 SMIM15Q7Z3B0 74 aa11.21□□□□□ -0.61
CLCNKA-201ENST00000331433 IFI27L1Q96BM0 104 aa11.21□□□□□ -0.61
CLCNKA-201ENST00000331433 TLN2Q9Y4G6 2542 aa11.21□□□□□ -0.61
CLCNKA-201ENST00000331433 ZNF469Q96JG9 3925 aaPredicted RBP11.21□□□□□ -0.61
CLCNKA-201ENST00000331433 TRAV21A0A0B4J279 112 aa11.21□□□□□ -0.61
CLCNKA-201ENST00000331433 ZNF580Q9UK33 172 aa11.21□□□□□ -0.61
CLCNKA-201ENST00000331433 IGHV4-4A0A075B6R2 117 aa11.2□□□□□ -0.62
CLCNKA-201ENST00000331433 LEPP41159 167 aa11.2□□□□□ -0.62
CLCNKA-201ENST00000331433 OR2K2Q8NGT1 345 aa11.2□□□□□ -0.62
CLCNKA-201ENST00000331433 FAM19A4Q96LR4 140 aa11.2□□□□□ -0.62
CLCNKA-201ENST00000331433 M0R381 172 aa11.2□□□□□ -0.62
CLCNKA-201ENST00000331433 ANXA2RQ3ZCQ2 193 aa11.2□□□□□ -0.62
CLCNKA-201ENST00000331433 MS4A6AQ9H2W1 248 aa11.2□□□□□ -0.62
CLCNKA-201ENST00000331433 NXT2Q9NPJ8 142 aaKnown RBP11.2□□□□□ -0.62
CLCNKA-201ENST00000331433 K7EMT4 169 aa11.19□□□□□ -0.62
CLCNKA-201ENST00000331433 IGHV4-31P0DP07 118 aa11.19□□□□□ -0.62
CLCNKA-201ENST00000331433 S100A4P26447 101 aaKnown RBP11.19□□□□□ -0.62
CLCNKA-201ENST00000331433 TCTAP57738 103 aa11.19□□□□□ -0.62
CLCNKA-201ENST00000331433 NRACQ8N912 160 aa11.19□□□□□ -0.62
CLCNKA-201ENST00000331433 WFDC12Q8WWY7 111 aa11.19□□□□□ -0.62
CLCNKA-201ENST00000331433 LINC01546A6NGU7 62 aa11.19□□□□□ -0.62
CLCNKA-201ENST00000331433 LGALS9BQ3B8N2 356 aa11.19□□□□□ -0.62
CLCNKA-201ENST00000331433 LGALS9CQ6DKI2 356 aa11.19□□□□□ -0.62
CLCNKA-201ENST00000331433 Q6ZVH6 145 aa11.19□□□□□ -0.62
CLCNKA-201ENST00000331433 DCANP1Q8TF63 244 aa11.19□□□□□ -0.62
CLCNKA-201ENST00000331433 VPREB3Q9UKI3 123 aa11.19□□□□□ -0.62
CLCNKA-201ENST00000331433 SORL1Q92673 2214 aa11.19□□□□□ -0.62
CLCNKA-201ENST00000331433 MYO9AB2RTY4 2548 aa11.19□□□□□ -0.62
CLCNKA-201ENST00000331433 MPV17L2Q567V2 206 aa11.18□□□□□ -0.62
CLCNKA-201ENST00000331433 IGLV2-18A0A075B6J9 118 aa11.18□□□□□ -0.62
CLCNKA-201ENST00000331433 GNRH2O43555 120 aa11.18□□□□□ -0.62
CLCNKA-201ENST00000331433 FCER1GP30273 86 aa11.18□□□□□ -0.62
CLCNKA-201ENST00000331433 ANKRD39Q53RE8 183 aa11.18□□□□□ -0.62
CLCNKA-201ENST00000331433 BEX4Q9NWD9 120 aaPredicted RBP11.18□□□□□ -0.62
CLCNKA-201ENST00000331433 HELZ2Q9BYK8 2649 aaKnown RBP11.18□□□□□ -0.62
CLCNKA-201ENST00000331433 APCP25054 2843 aa11.17□□□□□ -0.62
CLCNKA-201ENST00000331433 DLEU1O43261 78 aa11.17□□□□□ -0.62
CLCNKA-201ENST00000331433 ASIPP42127 132 aa11.17□□□□□ -0.62
CLCNKA-201ENST00000331433 Q8N8P6 123 aa11.17□□□□□ -0.62
CLCNKA-201ENST00000331433 DKK2Q9UBU2 259 aa11.17□□□□□ -0.62
CLCNKA-201ENST00000331433 FSHBP01225 129 aa11.17□□□□□ -0.62
CLCNKA-201ENST00000331433 Q5PR19 223 aa11.17□□□□□ -0.62
CLCNKA-201ENST00000331433 TMEM158Q8WZ71 300 aa11.17□□□□□ -0.62
CLCNKA-201ENST00000331433 HOXA3O43365 443 aaPredicted RBP11.16□□□□□ -0.62
CLCNKA-201ENST00000331433 NUDT3O95989 172 aa11.16□□□□□ -0.62
CLCNKA-201ENST00000331433 NPSP0C0P6 89 aa11.16□□□□□ -0.62
CLCNKA-201ENST00000331433 COX8AP10176 69 aa11.16□□□□□ -0.62
CLCNKA-201ENST00000331433 Q6YL49 198 aa11.16□□□□□ -0.62
CLCNKA-201ENST00000331433 APRG1Q8IVJ8 170 aa11.16□□□□□ -0.62
CLCNKA-201ENST00000331433 PHLDA3Q9Y5J5 127 aa11.16□□□□□ -0.62
CLCNKA-201ENST00000331433 ID1P41134 155 aa11.16□□□□□ -0.62
CLCNKA-201ENST00000331433 SYNJ2BPP57105 145 aa11.16□□□□□ -0.62
CLCNKA-201ENST00000331433 DUX5Q96PT3 197 aa11.16□□□□□ -0.62
CLCNKA-201ENST00000331433 ZNF702PQ9H963 129 aa11.16□□□□□ -0.62
CLCNKA-201ENST00000331433 AGRNO00468 2067 aa11.15□□□□□ -0.62
CLCNKA-201ENST00000331433 ZNF688P0C7X2 276 aa11.15□□□□□ -0.62
CLCNKA-201ENST00000331433 C14orf178Q8N769 122 aaPredicted RBP11.15□□□□□ -0.62
CLCNKA-201ENST00000331433 MUC4Q99102 2169 aa11.15□□□□□ -0.62
CLCNKA-201ENST00000331433 RNASE3P12724 160 aaKnown RBP11.15□□□□□ -0.62
CLCNKA-201ENST00000331433 DEFB113Q30KQ7 82 aa11.15□□□□□ -0.62
CLCNKA-201ENST00000331433 PRRC2AP48634 2157 aaKnown RBP11.14□□□□□ -0.63
CLCNKA-201ENST00000331433 SONP18583 2426 aaKnown RBP11.14□□□□□ -0.63
CLCNKA-201ENST00000331433 TMEM89A2RUT3 159 aa11.14□□□□□ -0.63
CLCNKA-201ENST00000331433 CD5LO43866 347 aa11.14□□□□□ -0.63
CLCNKA-201ENST00000331433 PSMG4Q5JS54 123 aa11.14□□□□□ -0.63
CLCNKA-201ENST00000331433 IGHV4OR15-8A0A075B7B6 117 aa11.14□□□□□ -0.63
CLCNKA-201ENST00000331433 A0A087WW49 117 aa11.14□□□□□ -0.63
CLCNKA-201ENST00000331433 TRBV7-9A0A0J9YWB2 115 aa11.14□□□□□ -0.63
CLCNKA-201ENST00000331433 KLLNB2CW77 178 aa11.14□□□□□ -0.63
CLCNKA-201ENST00000331433 LGALS1P09382 135 aaKnown RBP11.13□□□□□ -0.63
CLCNKA-201ENST00000331433 C2orf91Q6ZV80 131 aa11.13□□□□□ -0.63
CLCNKA-201ENST00000331433 MRAP2Q96G30 205 aa11.13□□□□□ -0.63
CLCNKA-201ENST00000331433 Q96MF0 132 aa11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 214.9 ms