RNA–Protein interactions for RNA: ENST00000318024.8

USH1C-202, Transcript of USH1 protein network component harmonin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USH1C, Length 2,237 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-202ENST00000318024 S4R3C0 116 aa12.24□□□□□ -0.45
USH1C-202ENST00000318024 CR1P17927 2039 aa12.23□□□□□ -0.45
USH1C-202ENST00000318024 NMUP48645 174 aa12.23□□□□□ -0.45
USH1C-202ENST00000318024 ZNF80P51504 273 aaPredicted RBP12.23□□□□□ -0.45
USH1C-202ENST00000318024 FXYD2P54710 66 aa12.23□□□□□ -0.45
USH1C-202ENST00000318024 CNFNQ9BYD5 112 aa12.23□□□□□ -0.45
USH1C-202ENST00000318024 MXRA5Q9NR99 2828 aa12.23□□□□□ -0.45
USH1C-202ENST00000318024 F8W735 103 aaPredicted RBP12.23□□□□□ -0.45
USH1C-202ENST00000318024 CKS2P33552 79 aa12.23□□□□□ -0.45
USH1C-202ENST00000318024 TLN2Q9Y4G6 2542 aa12.23□□□□□ -0.45
USH1C-202ENST00000318024 GAS8-AS1O95177 125 aa12.22□□□□□ -0.45
USH1C-202ENST00000318024 IGHG4P01861 327 aa12.22□□□□□ -0.45
USH1C-202ENST00000318024 PSMG4Q5JS54 123 aa12.22□□□□□ -0.45
USH1C-202ENST00000318024 SRSF2Q01130 221 aaKnown RBP12.22□□□□□ -0.45
USH1C-202ENST00000318024 ECSCRQ19T08 205 aa12.22□□□□□ -0.45
USH1C-202ENST00000318024 SAMD5Q5TGI4 173 aa12.22□□□□□ -0.45
USH1C-202ENST00000318024 C5orf56Q8N8D9 126 aa12.22□□□□□ -0.45
USH1C-202ENST00000318024 AAMDCQ9H7C9 122 aa12.22□□□□□ -0.45
USH1C-202ENST00000318024 IGKV2-40A0A087WW87 121 aaPredicted RBP12.21□□□□□ -0.45
USH1C-202ENST00000318024 ATP6V0E1O15342 81 aa12.21□□□□□ -0.45
USH1C-202ENST00000318024 IGKV2D-40P01614 121 aaPredicted RBP12.21□□□□□ -0.45
USH1C-202ENST00000318024 SMIM13P0DJ93 91 aa12.21□□□□□ -0.45
USH1C-202ENST00000318024 FABP2P12104 132 aa12.21□□□□□ -0.45
USH1C-202ENST00000318024 DEFB112Q30KQ8 113 aa12.21□□□□□ -0.45
USH1C-202ENST00000318024 WFDC3Q8IUB2 231 aa12.21□□□□□ -0.45
USH1C-202ENST00000318024 ZNF48Q96MX3 618 aaPredicted RBP12.21□□□□□ -0.45
USH1C-202ENST00000318024 LINC00527Q9UJ94 153 aa12.21□□□□□ -0.45
USH1C-202ENST00000318024 FBLL1A6NHQ2 334 aaKnown RBP12.21□□□□□ -0.46
USH1C-202ENST00000318024 J3QLI3 93 aa12.21□□□□□ -0.46
USH1C-202ENST00000318024 FCER1GP30273 86 aa12.21□□□□□ -0.46
USH1C-202ENST00000318024 FANCD2OSQ96PS1 177 aa12.21□□□□□ -0.46
USH1C-202ENST00000318024 G3V318 75 aa12.2□□□□□ -0.46
USH1C-202ENST00000318024 EVI2AP22794 236 aa12.2□□□□□ -0.46
USH1C-202ENST00000318024 TTTY13Q9BZ97 58 aa12.2□□□□□ -0.46
USH1C-202ENST00000318024 MSRB1Q9NZV6 116 aa12.2□□□□□ -0.46
USH1C-202ENST00000318024 TWIST1Q15672 202 aa12.19□□□□□ -0.46
USH1C-202ENST00000318024 TM2D2Q9BX73 214 aa12.19□□□□□ -0.46
USH1C-202ENST00000318024 MOB4Q9Y3A3 225 aa12.19□□□□□ -0.46
USH1C-202ENST00000318024 FLNAP21333 2647 aaKnown RBP12.19□□□□□ -0.46
USH1C-202ENST00000318024 NOTCH2Q04721 2471 aa12.19□□□□□ -0.46
USH1C-202ENST00000318024 TM4SF20Q53R12 229 aa12.19□□□□□ -0.46
USH1C-202ENST00000318024 TTC9CQ8N5M4 171 aa12.19□□□□□ -0.46
USH1C-202ENST00000318024 WFDC12Q8WWY7 111 aa12.19□□□□□ -0.46
USH1C-202ENST00000318024 IGLV2-18A0A075B6J9 118 aa12.18□□□□□ -0.46
USH1C-202ENST00000318024 IGHV3-23P01764 117 aa12.18□□□□□ -0.46
USH1C-202ENST00000318024 IGHV4-59P01825 116 aa12.18□□□□□ -0.46
USH1C-202ENST00000318024 HLA-DRB4P13762 266 aa12.18□□□□□ -0.46
USH1C-202ENST00000318024 VGLL1Q99990 258 aa12.18□□□□□ -0.46
USH1C-202ENST00000318024 CHAC1Q9BUX1 264 aa12.18□□□□□ -0.46
USH1C-202ENST00000318024 MAP1LC3AQ9H492 121 aa12.18□□□□□ -0.46
USH1C-202ENST00000318024 SMAD5-AS1Q9Y6J3 95 aa12.18□□□□□ -0.46
USH1C-202ENST00000318024 HLA-DRB4X5D2U9 266 aa12.18□□□□□ -0.46
USH1C-202ENST00000318024 IGLV11-55A0A075B6I3 123 aa12.18□□□□□ -0.46
USH1C-202ENST00000318024 TEX48A0A1B0GUV7 120 aa12.18□□□□□ -0.46
USH1C-202ENST00000318024 NPIPB5A8MRT5 1133 aa12.18□□□□□ -0.46
USH1C-202ENST00000318024 BLCAPP62952 87 aa12.18□□□□□ -0.46
USH1C-202ENST00000318024 IL17RELQ6ZVW7 336 aa12.18□□□□□ -0.46
USH1C-202ENST00000318024 TRBV25-1A0A075B6N4 114 aa12.17□□□□□ -0.46
USH1C-202ENST00000318024 A6NDX4 124 aa12.17□□□□□ -0.46
USH1C-202ENST00000318024 GCSHP23434 173 aa12.17□□□□□ -0.46
USH1C-202ENST00000318024 LEPP41159 167 aa12.17□□□□□ -0.46
USH1C-202ENST00000318024 Q6ZS46 218 aa12.17□□□□□ -0.46
USH1C-202ENST00000318024 Q8TAT8 98 aa12.17□□□□□ -0.46
USH1C-202ENST00000318024 CUBNO60494 3623 aa12.17□□□□□ -0.46
USH1C-202ENST00000318024 LINC01559Q495D7 138 aa12.17□□□□□ -0.46
USH1C-202ENST00000318024 ACANP16112 2415 aa12.16□□□□□ -0.46
USH1C-202ENST00000318024 SONP18583 2426 aaKnown RBP12.16□□□□□ -0.46
USH1C-202ENST00000318024 E9PLD3 99 aa12.16□□□□□ -0.46
USH1C-202ENST00000318024 TNFRSF6BO95407 300 aa12.16□□□□□ -0.46
USH1C-202ENST00000318024 IGKCP01834 107 aa12.16□□□□□ -0.46
USH1C-202ENST00000318024 S100A7AQ86SG5 101 aa12.16□□□□□ -0.46
USH1C-202ENST00000318024 NXT2Q9NPJ8 142 aaKnown RBP12.16□□□□□ -0.46
USH1C-202ENST00000318024 K7ERJ3 54 aa12.15□□□□□ -0.46
USH1C-202ENST00000318024 GNG7O60262 68 aa12.15□□□□□ -0.46
USH1C-202ENST00000318024 CEND1Q8N111 149 aa12.15□□□□□ -0.46
USH1C-202ENST00000318024 MFAP4P55083 255 aa12.15□□□□□ -0.46
USH1C-202ENST00000318024 RPL7P18124 248 aaKnown RBP12.14□□□□□ -0.47
USH1C-202ENST00000318024 HLA-DMBP28068 263 aa12.14□□□□□ -0.47
USH1C-202ENST00000318024 SMPXQ9UHP9 88 aa12.14□□□□□ -0.47
USH1C-202ENST00000318024 GATA1P15976 413 aaPredicted RBP12.14□□□□□ -0.47
USH1C-202ENST00000318024 ATP5LO75964 103 aa12.13□□□□□ -0.47
USH1C-202ENST00000318024 FSHBP01225 129 aa12.13□□□□□ -0.47
USH1C-202ENST00000318024 FOXI2Q6ZQN5 318 aa12.13□□□□□ -0.47
USH1C-202ENST00000318024 Q8N8P6 123 aa12.13□□□□□ -0.47
USH1C-202ENST00000318024 TMEM158Q8WZ71 300 aa12.13□□□□□ -0.47
USH1C-202ENST00000318024 FOXC2Q99958 501 aa12.13□□□□□ -0.47
USH1C-202ENST00000318024 DPM2O94777 84 aa12.13□□□□□ -0.47
USH1C-202ENST00000318024 ZC2HC1BQ5TFG8 222 aa12.13□□□□□ -0.47
USH1C-202ENST00000318024 IGFL4Q6B9Z1 124 aa12.13□□□□□ -0.47
USH1C-202ENST00000318024 GTSCR1Q86UQ5 136 aa12.13□□□□□ -0.47
USH1C-202ENST00000318024 MAPKAPK5-AS1Q8N8E1 139 aa12.13□□□□□ -0.47
USH1C-202ENST00000318024 FAM110DQ8TAY7 271 aaPredicted RBP12.13□□□□□ -0.47
USH1C-202ENST00000318024 DUX5Q96PT3 197 aa12.13□□□□□ -0.47
USH1C-202ENST00000318024 IGLL5B9A064 214 aa12.12□□□□□ -0.47
USH1C-202ENST00000318024 SCGB1A1P11684 91 aa12.12□□□□□ -0.47
USH1C-202ENST00000318024 SPANXB1Q9NS25 103 aaPredicted RBP12.12□□□□□ -0.47
USH1C-202ENST00000318024 AGRNO00468 2067 aa12.12□□□□□ -0.47
USH1C-202ENST00000318024 TRAV41A0A0B4J266 112 aa12.11□□□□□ -0.47
USH1C-202ENST00000318024 FABP5P3A8MUU1 101 aa12.11□□□□□ -0.47
USH1C-202ENST00000318024 PRSS1P07477 247 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms