RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 COX7CP15954 63 aa6.03□□□□□ -1.44
LIMCH1-201ENST00000313860 SAA4P35542 130 aa6.03□□□□□ -1.44
LIMCH1-201ENST00000313860 V9GYV3 84 aa6.03□□□□□ -1.44
LIMCH1-201ENST00000313860 A0A1B0GU69 56 aa6.02□□□□□ -1.45
LIMCH1-201ENST00000313860 CYSRT1A8MQ03 144 aa6.02□□□□□ -1.45
LIMCH1-201ENST00000313860 PDE6GP18545 87 aa6.02□□□□□ -1.45
LIMCH1-201ENST00000313860 WT1P19544 449 aaPredicted RBP6.02□□□□□ -1.45
LIMCH1-201ENST00000313860 TTTY12Q9BZ98 90 aa6.02□□□□□ -1.45
LIMCH1-201ENST00000313860 A0A087WZ39 114 aa6.02□□□□□ -1.45
LIMCH1-201ENST00000313860 PDE6HQ13956 83 aa6.02□□□□□ -1.45
LIMCH1-201ENST00000313860 C9orf139Q6ZV77 190 aa6.02□□□□□ -1.45
LIMCH1-201ENST00000313860 PLA2G5P39877 138 aa6.02□□□□□ -1.45
LIMCH1-201ENST00000313860 DOCK7Q96N67 2140 aa6.02□□□□□ -1.45
LIMCH1-201ENST00000313860 IGKV1D-16P01601 117 aa6.02□□□□□ -1.45
LIMCH1-201ENST00000313860 IGKV1-16P04430 117 aa6.02□□□□□ -1.45
LIMCH1-201ENST00000313860 FXYD2P54710 66 aa6.02□□□□□ -1.45
LIMCH1-201ENST00000313860 Q96M66 194 aa6.02□□□□□ -1.45
LIMCH1-201ENST00000313860 RHPN1-AS1Q9BWJ2 59 aa6.02□□□□□ -1.45
LIMCH1-201ENST00000313860 QRFPP83859 136 aa6.01□□□□□ -1.45
LIMCH1-201ENST00000313860 ATP6V0E2Q8NHE4 81 aa6.01□□□□□ -1.45
LIMCH1-201ENST00000313860 RTBDNQ9BSG5 229 aaPredicted RBP6.01□□□□□ -1.45
LIMCH1-201ENST00000313860 FHL5Q5TD97 284 aa6.01□□□□□ -1.45
LIMCH1-201ENST00000313860 ATP11AUNQ6ZP68 121 aa6.01□□□□□ -1.45
LIMCH1-201ENST00000313860 NOP10Q9NPE3 64 aaKnown RBP6.01□□□□□ -1.45
LIMCH1-201ENST00000313860 CHD5Q8TDI0 1954 aa6.01□□□□□ -1.45
LIMCH1-201ENST00000313860 ZNF646O15015 1829 aaPredicted RBP6.01□□□□□ -1.45
LIMCH1-201ENST00000313860 K7ENP7 123 aa6.01□□□□□ -1.45
LIMCH1-201ENST00000313860 NDUFA1O15239 70 aa6.01□□□□□ -1.45
LIMCH1-201ENST00000313860 C19orf48Q6RUI8 117 aa6.01□□□□□ -1.45
LIMCH1-201ENST00000313860 TTTY13Q9BZ97 58 aa6.01□□□□□ -1.45
LIMCH1-201ENST00000313860 F8W735 103 aaPredicted RBP6.01□□□□□ -1.45
LIMCH1-201ENST00000313860 WDR81Q562E7 1941 aa6.01□□□□□ -1.45
LIMCH1-201ENST00000313860 CCKP06307 115 aa6□□□□□ -1.45
LIMCH1-201ENST00000313860 C10orf55Q5SWW7 151 aa6□□□□□ -1.45
LIMCH1-201ENST00000313860 KTN1-AS1Q86SY8 53 aa6□□□□□ -1.45
LIMCH1-201ENST00000313860 RPP25LQ8N5L8 163 aaKnown RBP6□□□□□ -1.45
LIMCH1-201ENST00000313860 IGLV9-49A0A0B4J1Y8 123 aa6□□□□□ -1.45
LIMCH1-201ENST00000313860 DPTQ07507 201 aa6□□□□□ -1.45
LIMCH1-201ENST00000313860 FNDC1Q4ZHG4 1894 aaPredicted RBP6□□□□□ -1.45
LIMCH1-201ENST00000313860 TRBV7-3A0A075B6L6 115 aa6□□□□□ -1.45
LIMCH1-201ENST00000313860 TRBV7-7A0A0K0K1E9 115 aa6□□□□□ -1.45
LIMCH1-201ENST00000313860 LOC101059948A0A1B0GTJ6 334 aa6□□□□□ -1.45
LIMCH1-201ENST00000313860 APOC4P55056 127 aa6□□□□□ -1.45
LIMCH1-201ENST00000313860 A0A087WVE0 104 aa6□□□□□ -1.45
LIMCH1-201ENST00000313860 TREML4Q6UXN2 200 aa6□□□□□ -1.45
LIMCH1-201ENST00000313860 Q6ZS49 121 aa6□□□□□ -1.45
LIMCH1-201ENST00000313860 SPRY2O43597 315 aa5.99□□□□□ -1.45
LIMCH1-201ENST00000313860 GFRA4Q9GZZ7 299 aa5.99□□□□□ -1.45
LIMCH1-201ENST00000313860 CDPF1Q6NVV7 123 aa5.99□□□□□ -1.45
LIMCH1-201ENST00000313860 C11orf53Q8IXP5 236 aa5.99□□□□□ -1.45
LIMCH1-201ENST00000313860 AMELYQ99218 206 aa5.99□□□□□ -1.45
LIMCH1-201ENST00000313860 KLK5Q9Y337 293 aaPredicted RBP5.99□□□□□ -1.45
LIMCH1-201ENST00000313860 HRKO00198 91 aa5.99□□□□□ -1.45
LIMCH1-201ENST00000313860 IFI6P09912 130 aa5.99□□□□□ -1.45
LIMCH1-201ENST00000313860 MIR7-3HGQ8N6C7 128 aa5.99□□□□□ -1.45
LIMCH1-201ENST00000313860 C4orf26Q17RF5 130 aa5.99□□□□□ -1.45
LIMCH1-201ENST00000313860 ATP5EP2Q5VTU8 51 aa5.99□□□□□ -1.45
LIMCH1-201ENST00000313860 DCANP1Q8TF63 244 aa5.99□□□□□ -1.45
LIMCH1-201ENST00000313860 WBP1Q96G27 269 aa5.99□□□□□ -1.45
LIMCH1-201ENST00000313860 SCN8AQ9UQD0 1980 aa5.98□□□□□ -1.45
LIMCH1-201ENST00000313860 E9PQ18 207 aa5.98□□□□□ -1.45
LIMCH1-201ENST00000313860 VWCEQ96DN2 955 aa5.98□□□□□ -1.45
LIMCH1-201ENST00000313860 Q9Y3F1 56 aa5.98□□□□□ -1.45
LIMCH1-201ENST00000313860 TRIP6Q15654 476 aaKnown RBP5.98□□□□□ -1.45
LIMCH1-201ENST00000313860 TRIP11Q15643 1979 aa5.98□□□□□ -1.45
LIMCH1-201ENST00000313860 K7EM74 188 aa5.98□□□□□ -1.45
LIMCH1-201ENST00000313860 LUZP6Q538Z0 58 aa5.98□□□□□ -1.45
LIMCH1-201ENST00000313860 ATP1A1-AS1Q5TC04 95 aa5.98□□□□□ -1.45
LIMCH1-201ENST00000313860 COL2A1P02458 1487 aaPredicted RBP5.98□□□□□ -1.45
LIMCH1-201ENST00000313860 TRBV5-4A0A0C4DH59 114 aa5.98□□□□□ -1.45
LIMCH1-201ENST00000313860 J3QRE1 110 aa5.98□□□□□ -1.45
LIMCH1-201ENST00000313860 TM4SF5O14894 197 aa5.98□□□□□ -1.45
LIMCH1-201ENST00000313860 PRORYQ9H606 182 aa5.98□□□□□ -1.45
LIMCH1-201ENST00000313860 ASXL3Q9C0F0 2248 aa5.98□□□□□ -1.45
LIMCH1-201ENST00000313860 OVOL3O00110 214 aa5.98□□□□□ -1.45
LIMCH1-201ENST00000313860 RNF114Q9Y508 228 aa5.98□□□□□ -1.45
LIMCH1-201ENST00000313860 SPATA12Q7Z6I5 190 aa5.97□□□□□ -1.45
LIMCH1-201ENST00000313860 CRIPTQ9P021 101 aa5.97□□□□□ -1.45
LIMCH1-201ENST00000313860 HEATR1Q9H583 2144 aaKnown RBP5.97□□□□□ -1.45
LIMCH1-201ENST00000313860 IGLV3-27P01718 113 aa5.97□□□□□ -1.45
LIMCH1-201ENST00000313860 SLC25A47Q6Q0C1 308 aa5.97□□□□□ -1.45
LIMCH1-201ENST00000313860 ODF3L1Q8IXM7 274 aa5.97□□□□□ -1.45
LIMCH1-201ENST00000313860 TRGV9Q99603 122 aa5.97□□□□□ -1.45
LIMCH1-201ENST00000313860 IGKV1D-17A0A075B6S4 117 aa5.97□□□□□ -1.45
LIMCH1-201ENST00000313860 FAM27BQ5VT28 67 aa5.97□□□□□ -1.45
LIMCH1-201ENST00000313860 Q6ZNB5 142 aa5.97□□□□□ -1.45
LIMCH1-201ENST00000313860 DEFB136Q30KP8 78 aa5.97□□□□□ -1.45
LIMCH1-201ENST00000313860 SHISA2Q6UWI4 295 aa5.97□□□□□ -1.45
LIMCH1-201ENST00000313860 C7orf65Q6ZTY9 151 aa5.97□□□□□ -1.45
LIMCH1-201ENST00000313860 LYNX1G3V0Z9 82 aa5.97□□□□□ -1.45
LIMCH1-201ENST00000313860 LYNX1P0DP58 116 aa5.97□□□□□ -1.45
LIMCH1-201ENST00000313860 Q9BRP9 147 aa5.97□□□□□ -1.45
LIMCH1-201ENST00000313860 OTOFQ9HC10 1997 aa5.96□□□□□ -1.45
LIMCH1-201ENST00000313860 SCN9AQ15858 1988 aa5.96□□□□□ -1.45
LIMCH1-201ENST00000313860 TRBV7-1A0A0A6YYK4 115 aa5.96□□□□□ -1.45
LIMCH1-201ENST00000313860 C5orf67F2Z3F1 127 aa5.96□□□□□ -1.45
LIMCH1-201ENST00000313860 IGKV1-17P01599 117 aa5.96□□□□□ -1.45
LIMCH1-201ENST00000313860 SHROOM3Q8TF72 1996 aa5.96□□□□□ -1.45
LIMCH1-201ENST00000313860 GYPEP15421 78 aa5.96□□□□□ -1.46
LIMCH1-201ENST00000313860 CCL18P55774 89 aa5.96□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms