RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 MBD3L4A6NDZ8 208 aaPredicted RBP11.03□□□□□ -0.64
CSPG4-201ENST00000308508 MBD3L3A6NE82 208 aaPredicted RBP11.03□□□□□ -0.64
CSPG4-201ENST00000308508 MBD3L5A6NJ08 208 aaPredicted RBP11.03□□□□□ -0.64
CSPG4-201ENST00000308508 PRB1P04280 392 aa11.03□□□□□ -0.64
CSPG4-201ENST00000308508 RNASE13Q5GAN3 156 aaKnown RBP11.03□□□□□ -0.64
CSPG4-201ENST00000308508 MBD3L2Q8NHZ7 208 aaPredicted RBP11.03□□□□□ -0.64
CSPG4-201ENST00000308508 NDUFB1O75438 58 aa11.03□□□□□ -0.64
CSPG4-201ENST00000308508 C8orf31Q8N9H6 132 aa11.03□□□□□ -0.64
CSPG4-201ENST00000308508 ATP5G1P05496 136 aa11.03□□□□□ -0.64
CSPG4-201ENST00000308508 ZFP2Q6ZN57 461 aa11.03□□□□□ -0.64
CSPG4-201ENST00000308508 IGHV1-69DA0A0B4J2H0 117 aa11.02□□□□□ -0.64
CSPG4-201ENST00000308508 BRK1Q8WUW1 75 aa11.02□□□□□ -0.64
CSPG4-201ENST00000308508 VSIG2Q96IQ7 327 aa11.02□□□□□ -0.64
CSPG4-201ENST00000308508 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP11.02□□□□□ -0.65
CSPG4-201ENST00000308508 COL8A2P25067 703 aa11.02□□□□□ -0.65
CSPG4-201ENST00000308508 UBE2BP63146 152 aa11.02□□□□□ -0.65
CSPG4-201ENST00000308508 TNCP24821 2201 aa11.02□□□□□ -0.65
CSPG4-201ENST00000308508 RBAKDNA6NC62 111 aa11.02□□□□□ -0.65
CSPG4-201ENST00000308508 K7EN84 100 aa11.02□□□□□ -0.65
CSPG4-201ENST00000308508 IGKV1-39P01597 117 aa11.02□□□□□ -0.65
CSPG4-201ENST00000308508 IGKV1D-39P04432 117 aa11.02□□□□□ -0.65
CSPG4-201ENST00000308508 XCL1P47992 114 aa11.02□□□□□ -0.65
CSPG4-201ENST00000308508 TNRC6BQ9UPQ9 1833 aaKnown RBP11.02□□□□□ -0.65
CSPG4-201ENST00000308508 IGKV3D-7A0A0C4DH55 119 aa11.02□□□□□ -0.65
CSPG4-201ENST00000308508 C14orf132Q9NPU4 83 aa11.01□□□□□ -0.65
CSPG4-201ENST00000308508 MUSTN1Q8IVN3 82 aa11.01□□□□□ -0.65
CSPG4-201ENST00000308508 BPESC1Q9GZL8 116 aa11.01□□□□□ -0.65
CSPG4-201ENST00000308508 FNDC1Q4ZHG4 1894 aaPredicted RBP11.01□□□□□ -0.65
CSPG4-201ENST00000308508 NREPQ16612 68 aa11.01□□□□□ -0.65
CSPG4-201ENST00000308508 CLPSL2Q6UWE3 100 aa11.01□□□□□ -0.65
CSPG4-201ENST00000308508 IGF2BP2-AS1Q96M15 143 aa11.01□□□□□ -0.65
CSPG4-201ENST00000308508 CSRP1P21291 193 aaKnown RBP11□□□□□ -0.65
CSPG4-201ENST00000308508 GATA4P43694 442 aa11□□□□□ -0.65
CSPG4-201ENST00000308508 PLXNA4Q9HCM2 1894 aa11□□□□□ -0.65
CSPG4-201ENST00000308508 VWCEQ96DN2 955 aa11□□□□□ -0.65
CSPG4-201ENST00000308508 OPRPNQ99935 248 aaPredicted RBP11□□□□□ -0.65
CSPG4-201ENST00000308508 IL15RAQ13261 267 aa11□□□□□ -0.65
CSPG4-201ENST00000308508 E9PQ18 207 aa11□□□□□ -0.65
CSPG4-201ENST00000308508 Q8TCH9 128 aa11□□□□□ -0.65
CSPG4-201ENST00000308508 COX7B2Q8TF08 81 aa11□□□□□ -0.65
CSPG4-201ENST00000308508 COL4A1P02462 1669 aa11□□□□□ -0.65
CSPG4-201ENST00000308508 ZNRD1Q9P1U0 126 aa10.99□□□□□ -0.65
CSPG4-201ENST00000308508 ETDCA0A1B0GVM5 59 aa10.99□□□□□ -0.65
CSPG4-201ENST00000308508 JMJD7-PLA2G4BH0Y9G9 81 aa10.99□□□□□ -0.65
CSPG4-201ENST00000308508 MDS2Q8NDY4 140 aa10.99□□□□□ -0.65
CSPG4-201ENST00000308508 PRDM6Q9NQX0 595 aa10.99□□□□□ -0.65
CSPG4-201ENST00000308508 COA6Q5JTJ3 125 aaKnown RBP10.99□□□□□ -0.65
CSPG4-201ENST00000308508 LENEPQ9Y5L5 61 aa10.99□□□□□ -0.65
CSPG4-201ENST00000308508 B3GALT5-AS1P59052 145 aa10.99□□□□□ -0.65
CSPG4-201ENST00000308508 FOXI1Q12951 378 aa10.99□□□□□ -0.65
CSPG4-201ENST00000308508 PROP1O75360 226 aa10.99□□□□□ -0.65
CSPG4-201ENST00000308508 FAM120AOSQ5T036 256 aa10.99□□□□□ -0.65
CSPG4-201ENST00000308508 LINC00311Q8N616 119 aa10.99□□□□□ -0.65
CSPG4-201ENST00000308508 SEC61GP60059 68 aa10.98□□□□□ -0.65
CSPG4-201ENST00000308508 ATP6V0E2Q8NHE4 81 aa10.98□□□□□ -0.65
CSPG4-201ENST00000308508 LYPD6BQ8NI32 183 aa10.98□□□□□ -0.65
CSPG4-201ENST00000308508 MED13Q9UHV7 2174 aa10.98□□□□□ -0.65
CSPG4-201ENST00000308508 MSMBP08118 114 aa10.98□□□□□ -0.65
CSPG4-201ENST00000308508 SND1-IT1Q9HBX3 110 aa10.98□□□□□ -0.65
CSPG4-201ENST00000308508 PLXNB3Q9ULL4 1909 aa10.98□□□□□ -0.65
CSPG4-201ENST00000308508 PLXNB1O43157 2135 aa10.98□□□□□ -0.65
CSPG4-201ENST00000308508 TICRRQ7Z2Z1 1910 aa10.98□□□□□ -0.65
CSPG4-201ENST00000308508 IGHV7-4-1A0A0J9YVY3 117 aa10.98□□□□□ -0.65
CSPG4-201ENST00000308508 WT1-ASQ06250 92 aa10.98□□□□□ -0.65
CSPG4-201ENST00000308508 DUX4L9Q6RFH8 374 aaPredicted RBP10.98□□□□□ -0.65
CSPG4-201ENST00000308508 DSCAML1Q8TD84 2053 aa10.98□□□□□ -0.65
CSPG4-201ENST00000308508 PRB2P02812 416 aaPredicted RBP10.98□□□□□ -0.65
CSPG4-201ENST00000308508 HIGD1BQ9P298 99 aa10.98□□□□□ -0.65
CSPG4-201ENST00000308508 G3V4G9 280 aa10.98□□□□□ -0.65
CSPG4-201ENST00000308508 ANAPC1Q9H1A4 1944 aa10.98□□□□□ -0.65
CSPG4-201ENST00000308508 TRAV4A0A0B4J268 109 aa10.98□□□□□ -0.65
CSPG4-201ENST00000308508 BUB3O43684 328 aa10.97□□□□□ -0.65
CSPG4-201ENST00000308508 IGHV1-69P01742 117 aa10.97□□□□□ -0.65
CSPG4-201ENST00000308508 C17orf58Q2M2W7 97 aa10.97□□□□□ -0.65
CSPG4-201ENST00000308508 THSD7AQ9UPZ6 1657 aa10.97□□□□□ -0.65
CSPG4-201ENST00000308508 G3V318 75 aa10.97□□□□□ -0.65
CSPG4-201ENST00000308508 LY6DQ14210 128 aa10.97□□□□□ -0.65
CSPG4-201ENST00000308508 IGHV4-28A0A0C4DH34 117 aa10.97□□□□□ -0.65
CSPG4-201ENST00000308508 RUSC1-AS1Q66K80 236 aa10.97□□□□□ -0.65
CSPG4-201ENST00000308508 PLXNA2O75051 1894 aa10.97□□□□□ -0.65
CSPG4-201ENST00000308508 Q0VFX4 171 aa10.97□□□□□ -0.65
CSPG4-201ENST00000308508 IGKV2D-29A0A075B6S2 120 aaPredicted RBP10.97□□□□□ -0.65
CSPG4-201ENST00000308508 IGKV2-29A2NJV5 120 aaPredicted RBP10.97□□□□□ -0.65
CSPG4-201ENST00000308508 A4D1N5 150 aa10.96□□□□□ -0.65
CSPG4-201ENST00000308508 E7EQL1 145 aa10.96□□□□□ -0.65
CSPG4-201ENST00000308508 LINC01620Q4KN68 170 aa10.96□□□□□ -0.65
CSPG4-201ENST00000308508 CDPF1Q6NVV7 123 aa10.96□□□□□ -0.65
CSPG4-201ENST00000308508 C3orf56Q8N813 242 aa10.96□□□□□ -0.66
CSPG4-201ENST00000308508 CRYGBP07316 175 aa10.96□□□□□ -0.66
CSPG4-201ENST00000308508 WFDC2Q14508 124 aa10.96□□□□□ -0.66
CSPG4-201ENST00000308508 KLF2Q9Y5W3 355 aaPredicted RBP10.96□□□□□ -0.66
CSPG4-201ENST00000308508 LGALS9O00182 355 aa10.95□□□□□ -0.66
CSPG4-201ENST00000308508 TAX1BP3O14907 124 aa10.95□□□□□ -0.66
CSPG4-201ENST00000308508 HIGD2BQ4VC39 106 aa10.95□□□□□ -0.66
CSPG4-201ENST00000308508 IGHV4-4A0A075B6R2 117 aa10.95□□□□□ -0.66
CSPG4-201ENST00000308508 ASPHD1Q5U4P2 390 aa10.95□□□□□ -0.66
CSPG4-201ENST00000308508 MRPL55Q7Z7F7 128 aaKnown RBP10.95□□□□□ -0.66
CSPG4-201ENST00000308508 RNASE8Q8TDE3 154 aaKnown RBP10.95□□□□□ -0.66
CSPG4-201ENST00000308508 CREBBPQ92793 2442 aa10.95□□□□□ -0.66
CSPG4-201ENST00000308508 MRPL23Q16540 153 aaKnown RBP10.95□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 55.3 ms