RNA–Protein interactions for RNA: ENST00000296581.10

LSM6-201, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM6, Length 2,259 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-201ENST00000296581 ASCL2Q99929 193 aa11.76□□□□□ -0.53
LSM6-201ENST00000296581 RPP21Q9H633 154 aaKnown RBP11.76□□□□□ -0.53
LSM6-201ENST00000296581 NUDT3O95989 172 aa11.75□□□□□ -0.53
LSM6-201ENST00000296581 CA1P00915 261 aaPredicted RBP11.75□□□□□ -0.53
LSM6-201ENST00000296581 P01737 135 aa11.75□□□□□ -0.53
LSM6-201ENST00000296581 KHDC1LQ5JSQ8 128 aa11.75□□□□□ -0.53
LSM6-201ENST00000296581 KLHL30-AS1Q8NEE0 82 aa11.75□□□□□ -0.53
LSM6-201ENST00000296581 OR11H1Q8NG94 326 aa11.75□□□□□ -0.53
LSM6-201ENST00000296581 C20orf173Q96LM9 149 aa11.75□□□□□ -0.53
LSM6-201ENST00000296581 C8orf49Q96NF6 230 aa11.75□□□□□ -0.53
LSM6-201ENST00000296581 TP73-AS1Q9UF72 201 aa11.75□□□□□ -0.53
LSM6-201ENST00000296581 C2orf70A6NJV1 201 aa11.75□□□□□ -0.53
LSM6-201ENST00000296581 SLURP1P55000 103 aa11.75□□□□□ -0.53
LSM6-201ENST00000296581 TSKUQ8WUA8 353 aa11.75□□□□□ -0.53
LSM6-201ENST00000296581 DAZAP1Q96EP5 407 aaKnown RBP11.75□□□□□ -0.53
LSM6-201ENST00000296581 FRMD6-AS1P0C7T7 363 aa11.74□□□□□ -0.53
LSM6-201ENST00000296581 CRIP1P50238 77 aa11.74□□□□□ -0.53
LSM6-201ENST00000296581 RPL11P62913 178 aaKnown RBP11.74□□□□□ -0.53
LSM6-201ENST00000296581 UFSP1Q6NVU6 142 aa11.74□□□□□ -0.53
LSM6-201ENST00000296581 PET117Q6UWS5 81 aa11.74□□□□□ -0.53
LSM6-201ENST00000296581 AZU1P20160 251 aa11.74□□□□□ -0.53
LSM6-201ENST00000296581 ERCC8Q13216 396 aa11.74□□□□□ -0.53
LSM6-201ENST00000296581 FAM19A2Q8N3H0 131 aa11.74□□□□□ -0.53
LSM6-201ENST00000296581 Q8TAT8 98 aa11.74□□□□□ -0.53
LSM6-201ENST00000296581 DPF1Q92782 380 aa11.74□□□□□ -0.53
LSM6-201ENST00000296581 GAGE10A6NGK3 116 aa11.73□□□□□ -0.53
LSM6-201ENST00000296581 CT45A10P0DMU9 189 aa11.73□□□□□ -0.53
LSM6-201ENST00000296581 CD28P10747 220 aa11.73□□□□□ -0.53
LSM6-201ENST00000296581 TCL1AP56279 114 aa11.73□□□□□ -0.53
LSM6-201ENST00000296581 C9orf47Q6ZRZ4 202 aa11.73□□□□□ -0.53
LSM6-201ENST00000296581 AGPAT4-IT1Q9H0P7 198 aa11.73□□□□□ -0.53
LSM6-201ENST00000296581 CUBNO60494 3623 aa11.73□□□□□ -0.53
LSM6-201ENST00000296581 IZUMO1RA6ND01 250 aa11.72□□□□□ -0.53
LSM6-201ENST00000296581 C12orf54Q6X4T0 127 aa11.72□□□□□ -0.53
LSM6-201ENST00000296581 NEGR1Q7Z3B1 354 aa11.72□□□□□ -0.53
LSM6-201ENST00000296581 DCANP1Q8TF63 244 aa11.72□□□□□ -0.53
LSM6-201ENST00000296581 NDFIP1Q9BT67 221 aa11.72□□□□□ -0.53
LSM6-201ENST00000296581 GNB1LQ9BYB4 327 aa11.72□□□□□ -0.53
LSM6-201ENST00000296581 A8MWL6 223 aa11.72□□□□□ -0.53
LSM6-201ENST00000296581 OVOL1O14753 267 aa11.72□□□□□ -0.53
LSM6-201ENST00000296581 ADAMTSL5Q6ZMM2 481 aa11.72□□□□□ -0.53
LSM6-201ENST00000296581 NAT8BQ9UHF3 227 aa11.72□□□□□ -0.53
LSM6-201ENST00000296581 NF1P21359 2839 aa11.72□□□□□ -0.53
LSM6-201ENST00000296581 TRAV26-1A0A087WT03 109 aa11.71□□□□□ -0.53
LSM6-201ENST00000296581 NTF3P20783 257 aa11.71□□□□□ -0.53
LSM6-201ENST00000296581 GFRA4Q9GZZ7 299 aa11.71□□□□□ -0.53
LSM6-201ENST00000296581 SELENOKQ9Y6D0 94 aa11.71□□□□□ -0.53
LSM6-201ENST00000296581 IGKV3-7A0A075B6H7 116 aa11.71□□□□□ -0.54
LSM6-201ENST00000296581 ZNF138P52744 262 aa11.71□□□□□ -0.54
LSM6-201ENST00000296581 CRYBA4P53673 196 aa11.71□□□□□ -0.54
LSM6-201ENST00000296581 TMEM78Q5T7P6 136 aa11.71□□□□□ -0.54
LSM6-201ENST00000296581 HIST2H2BDQ6DRA6 164 aa11.71□□□□□ -0.54
LSM6-201ENST00000296581 DUX3Q96PT4 197 aa11.71□□□□□ -0.54
LSM6-201ENST00000296581 TSSC4Q9Y5U2 329 aaPredicted RBP11.71□□□□□ -0.54
LSM6-201ENST00000296581 HIVEP1P15822 2718 aa11.71□□□□□ -0.54
LSM6-201ENST00000296581 FAM231BA6NCW3 169 aa11.7□□□□□ -0.54
LSM6-201ENST00000296581 PROK1P58294 105 aa11.7□□□□□ -0.54
LSM6-201ENST00000296581 SMAGPQ0VAQ4 97 aa11.7□□□□□ -0.54
LSM6-201ENST00000296581 FHL3Q13643 280 aa11.7□□□□□ -0.54
LSM6-201ENST00000296581 FAM162BQ5T6X4 162 aa11.7□□□□□ -0.54
LSM6-201ENST00000296581 NUP35Q8NFH5 326 aa11.7□□□□□ -0.54
LSM6-201ENST00000296581 OR9G4Q8NGQ1 327 aa11.7□□□□□ -0.54
LSM6-201ENST00000296581 MS4A6AQ9H2W1 248 aa11.7□□□□□ -0.54
LSM6-201ENST00000296581 PEMTQ9UBM1 199 aa11.7□□□□□ -0.54
LSM6-201ENST00000296581 ID1P41134 155 aa11.7□□□□□ -0.54
LSM6-201ENST00000296581 KIAA1644Q3SXP7 199 aa11.7□□□□□ -0.54
LSM6-201ENST00000296581 GTF2H5Q6ZYL4 71 aa11.7□□□□□ -0.54
LSM6-201ENST00000296581 C11orf44Q8N8P7 122 aa11.7□□□□□ -0.54
LSM6-201ENST00000296581 DLX4Q92988 240 aaPredicted RBP11.7□□□□□ -0.54
LSM6-201ENST00000296581 RAX2Q96IS3 184 aa11.7□□□□□ -0.54
LSM6-201ENST00000296581 CITED2Q99967 270 aaPredicted RBP11.7□□□□□ -0.54
LSM6-201ENST00000296581 GTSF1LQ9H1H1 148 aa11.7□□□□□ -0.54
LSM6-201ENST00000296581 NSD1Q96L73 2696 aaPredicted RBP11.69□□□□□ -0.54
LSM6-201ENST00000296581 HIGD1CA8MV81 97 aa11.69□□□□□ -0.54
LSM6-201ENST00000296581 SH2D1AO60880 128 aa11.69□□□□□ -0.54
LSM6-201ENST00000296581 CRLF1O75462 422 aa11.69□□□□□ -0.54
LSM6-201ENST00000296581 MT-ND6P03923 174 aa11.69□□□□□ -0.54
LSM6-201ENST00000296581 ZNF80P51504 273 aaPredicted RBP11.69□□□□□ -0.54
LSM6-201ENST00000296581 GTSF1Q8WW33 167 aa11.69□□□□□ -0.54
LSM6-201ENST00000296581 ST20Q9HBF5 79 aa11.69□□□□□ -0.54
LSM6-201ENST00000296581 LENEPQ9Y5L5 61 aa11.69□□□□□ -0.54
LSM6-201ENST00000296581 HAX1O00165 279 aa11.69□□□□□ -0.54
LSM6-201ENST00000296581 COX19Q49B96 90 aa11.69□□□□□ -0.54
LSM6-201ENST00000296581 LINC00477Q96M19 166 aa11.69□□□□□ -0.54
LSM6-201ENST00000296581 SIGMAR1Q99720 223 aa11.69□□□□□ -0.54
LSM6-201ENST00000296581 FN1P02751 2386 aaKnown RBP11.68□□□□□ -0.54
LSM6-201ENST00000296581 K7EQG2 157 aa11.68□□□□□ -0.54
LSM6-201ENST00000296581 SPINK4O60575 86 aa11.68□□□□□ -0.54
LSM6-201ENST00000296581 SRIP30626 198 aa11.68□□□□□ -0.54
LSM6-201ENST00000296581 EBLN2Q6P2I7 272 aa11.68□□□□□ -0.54
LSM6-201ENST00000296581 OR10J6PQ8NGY7 276 aa11.68□□□□□ -0.54
LSM6-201ENST00000296581 C7orf71A4D174 169 aa11.67□□□□□ -0.54
LSM6-201ENST00000296581 SMIM17P0DL12 118 aa11.67□□□□□ -0.54
LSM6-201ENST00000296581 FOXA3P55318 350 aaPredicted RBP11.67□□□□□ -0.54
LSM6-201ENST00000296581 RASL11AQ6T310 242 aa11.67□□□□□ -0.54
LSM6-201ENST00000296581 OR8A1Q8NGG7 326 aa11.67□□□□□ -0.54
LSM6-201ENST00000296581 A0A1W2PRX2 142 aa11.67□□□□□ -0.54
LSM6-201ENST00000296581 CSN3P07498 182 aa11.67□□□□□ -0.54
LSM6-201ENST00000296581 MRPL54Q6P161 138 aaKnown RBP11.67□□□□□ -0.54
LSM6-201ENST00000296581 SLC25A34Q6PIV7 304 aa11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 77.4 ms