RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 RNF138Q8WVD3 245 aa7.91□□□□□ -1.14
COL6A3-201ENST00000295550 ORMDL1Q9P0S3 153 aa7.91□□□□□ -1.14
COL6A3-201ENST00000295550 IGHV3-16A0A0C4DH30 117 aa7.91□□□□□ -1.14
COL6A3-201ENST00000295550 MBD3L4A6NDZ8 208 aaPredicted RBP7.91□□□□□ -1.14
COL6A3-201ENST00000295550 MBD3L3A6NE82 208 aaPredicted RBP7.91□□□□□ -1.14
COL6A3-201ENST00000295550 PRSS29PA6NIE9 313 aa7.91□□□□□ -1.14
COL6A3-201ENST00000295550 MBD3L5A6NJ08 208 aaPredicted RBP7.91□□□□□ -1.14
COL6A3-201ENST00000295550 MBD3L2Q8NHZ7 208 aaPredicted RBP7.91□□□□□ -1.14
COL6A3-201ENST00000295550 TMEM178BH3BS89 294 aa7.91□□□□□ -1.14
COL6A3-201ENST00000295550 IGKV1-39P01597 117 aa7.91□□□□□ -1.14
COL6A3-201ENST00000295550 IGKV1D-39P04432 117 aa7.91□□□□□ -1.14
COL6A3-201ENST00000295550 MINOS1Q5TGZ0 78 aa7.91□□□□□ -1.14
COL6A3-201ENST00000295550 Q8NFD4 153 aa7.91□□□□□ -1.14
COL6A3-201ENST00000295550 MINOS1-NBL1R4GNA1 71 aa7.91□□□□□ -1.14
COL6A3-201ENST00000295550 KLF5Q13887 457 aaPredicted RBP7.91□□□□□ -1.14
COL6A3-201ENST00000295550 Q8TCH9 128 aa7.91□□□□□ -1.14
COL6A3-201ENST00000295550 CFHR3Q02985 330 aa7.91□□□□□ -1.14
COL6A3-201ENST00000295550 MRPL35Q9NZE8 188 aaKnown RBP7.9□□□□□ -1.14
COL6A3-201ENST00000295550 BUB1B-PAK6H3BSN5 160 aa7.9□□□□□ -1.14
COL6A3-201ENST00000295550 SIVA1O15304 175 aa7.9□□□□□ -1.14
COL6A3-201ENST00000295550 SDHAF1A6NFY7 115 aa7.9□□□□□ -1.14
COL6A3-201ENST00000295550 LYPD6Q86Y78 171 aa7.9□□□□□ -1.14
COL6A3-201ENST00000295550 BAALCQ8WXS3 180 aa7.9□□□□□ -1.14
COL6A3-201ENST00000295550 ATOX1O00244 68 aa7.9□□□□□ -1.15
COL6A3-201ENST00000295550 LGALS9BQ3B8N2 356 aa7.9□□□□□ -1.15
COL6A3-201ENST00000295550 LGALS9CQ6DKI2 356 aa7.9□□□□□ -1.15
COL6A3-201ENST00000295550 F6UB75 175 aa7.9□□□□□ -1.15
COL6A3-201ENST00000295550 M0R1W7 72 aa7.9□□□□□ -1.15
COL6A3-201ENST00000295550 KLK9Q9UKQ9 250 aa7.9□□□□□ -1.15
COL6A3-201ENST00000295550 KNCNA6PVL3 124 aa7.9□□□□□ -1.15
COL6A3-201ENST00000295550 C12orf74Q32Q52 190 aa7.9□□□□□ -1.15
COL6A3-201ENST00000295550 A0A1B0GX51 115 aa7.89□□□□□ -1.15
COL6A3-201ENST00000295550 WDR86Q86TI4 376 aa7.89□□□□□ -1.15
COL6A3-201ENST00000295550 CPAMD8Q8IZJ3 1885 aa7.89□□□□□ -1.15
COL6A3-201ENST00000295550 BAALC-AS2P0C853 105 aa7.89□□□□□ -1.15
COL6A3-201ENST00000295550 FAM236AA0A1B0GUQ0 79 aa7.89□□□□□ -1.15
COL6A3-201ENST00000295550 FAM236BA0A1B0GV22 79 aa7.89□□□□□ -1.15
COL6A3-201ENST00000295550 NXPH4O95158 308 aa7.89□□□□□ -1.15
COL6A3-201ENST00000295550 ACYP1P07311 99 aa7.89□□□□□ -1.15
COL6A3-201ENST00000295550 ZNF493Q6ZR52 646 aa7.89□□□□□ -1.15
COL6A3-201ENST00000295550 F5H768 121 aa7.89□□□□□ -1.15
COL6A3-201ENST00000295550 OOSP1A8MZH6 123 aa7.89□□□□□ -1.15
COL6A3-201ENST00000295550 HERVK_113P63121 156 aa7.89□□□□□ -1.15
COL6A3-201ENST00000295550 Q6ZSR3 168 aa7.89□□□□□ -1.15
COL6A3-201ENST00000295550 CRYGCP07315 174 aa7.89□□□□□ -1.15
COL6A3-201ENST00000295550 RHPN1-AS1Q9BWJ2 59 aa7.89□□□□□ -1.15
COL6A3-201ENST00000295550 IGKV1-16P04430 117 aa7.89□□□□□ -1.15
COL6A3-201ENST00000295550 V9GYV3 84 aa7.88□□□□□ -1.15
COL6A3-201ENST00000295550 SMIM2Q9BVW6 85 aa7.88□□□□□ -1.15
COL6A3-201ENST00000295550 ANXA2RQ3ZCQ2 193 aa7.88□□□□□ -1.15
COL6A3-201ENST00000295550 NDUFS7O75251 213 aa7.88□□□□□ -1.15
COL6A3-201ENST00000295550 ZNF833PQ6ZTB9 187 aa7.88□□□□□ -1.15
COL6A3-201ENST00000295550 MP68P56378 58 aa7.88□□□□□ -1.15
COL6A3-201ENST00000295550 SPATA25Q9BR10 227 aa7.88□□□□□ -1.15
COL6A3-201ENST00000295550 VWC2Q2TAL6 325 aa7.87□□□□□ -1.15
COL6A3-201ENST00000295550 FUSP35637 526 aaKnown RBP eCLIP7.87□□□□□ -1.15
COL6A3-201ENST00000295550 SPTBN4Q9H254 2564 aa7.87□□□□□ -1.15
COL6A3-201ENST00000295550 ZNF503-AS2A6NEH8 195 aa7.87□□□□□ -1.15
COL6A3-201ENST00000295550 ZC2HC1AQ96GY0 325 aa7.87□□□□□ -1.15
COL6A3-201ENST00000295550 NDUFA4L2Q9NRX3 87 aa7.87□□□□□ -1.15
COL6A3-201ENST00000295550 PKD1L2Q7Z442 2459 aa7.87□□□□□ -1.15
COL6A3-201ENST00000295550 MRPL23Q16540 153 aaKnown RBP7.87□□□□□ -1.15
COL6A3-201ENST00000295550 SPINK13Q1W4C9 94 aa7.87□□□□□ -1.15
COL6A3-201ENST00000295550 NTN5Q8WTR8 489 aaPredicted RBP7.87□□□□□ -1.15
COL6A3-201ENST00000295550 PRSS47A8MTI9 375 aa7.87□□□□□ -1.15
COL6A3-201ENST00000295550 C15orf65H3BRN8 121 aa7.87□□□□□ -1.15
COL6A3-201ENST00000295550 RNASE13Q5GAN3 156 aaKnown RBP7.87□□□□□ -1.15
COL6A3-201ENST00000295550 LINC01545Q5VT33 79 aa7.87□□□□□ -1.15
COL6A3-201ENST00000295550 H3BUX3 64 aa7.87□□□□□ -1.15
COL6A3-201ENST00000295550 IGHV2-70DA0A0C4DH43 119 aa7.86□□□□□ -1.15
COL6A3-201ENST00000295550 ZNF134P52741 427 aa7.86□□□□□ -1.15
COL6A3-201ENST00000295550 SRSF2Q01130 221 aaKnown RBP7.86□□□□□ -1.15
COL6A3-201ENST00000295550 NPYP01303 97 aa7.86□□□□□ -1.15
COL6A3-201ENST00000295550 DAD1P61803 113 aa7.86□□□□□ -1.15
COL6A3-201ENST00000295550 C11orf52Q96A22 123 aa7.86□□□□□ -1.15
COL6A3-201ENST00000295550 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP7.86□□□□□ -1.15
COL6A3-201ENST00000295550 LINC00205P59089 165 aa7.86□□□□□ -1.15
COL6A3-201ENST00000295550 YPEL3P61236 119 aaPredicted RBP7.86□□□□□ -1.15
COL6A3-201ENST00000295550 C8orf86Q6ZUL3 223 aa7.86□□□□□ -1.15
COL6A3-201ENST00000295550 FAM231DQ6ZW35 169 aa7.86□□□□□ -1.15
COL6A3-201ENST00000295550 NDUFB8O95169 186 aa7.86□□□□□ -1.15
COL6A3-201ENST00000295550 DSCR9P59020 149 aa7.86□□□□□ -1.15
COL6A3-201ENST00000295550 CR1LQ2VPA4 569 aa7.86□□□□□ -1.15
COL6A3-201ENST00000295550 CLPSL2Q6UWE3 100 aa7.86□□□□□ -1.15
COL6A3-201ENST00000295550 TRBV19A0A075B6N1 114 aa7.86□□□□□ -1.15
COL6A3-201ENST00000295550 TEX48A0A1B0GUV7 120 aa7.85□□□□□ -1.15
COL6A3-201ENST00000295550 BRK1Q8WUW1 75 aa7.85□□□□□ -1.15
COL6A3-201ENST00000295550 BRD3OSQ6XYD6 125 aa7.85□□□□□ -1.15
COL6A3-201ENST00000295550 IGKV3D-7A0A0C4DH55 119 aa7.85□□□□□ -1.15
COL6A3-201ENST00000295550 DKK2Q9UBU2 259 aa7.85□□□□□ -1.15
COL6A3-201ENST00000295550 IGHV3-38A0A0C4DH36 116 aa7.85□□□□□ -1.15
COL6A3-201ENST00000295550 ICOSQ9Y6W8 199 aa7.85□□□□□ -1.15
COL6A3-201ENST00000295550 ADAMTS20P59510 1910 aa7.85□□□□□ -1.15
COL6A3-201ENST00000295550 DEFB105AQ8NG35 78 aa7.85□□□□□ -1.15
COL6A3-201ENST00000295550 ZNF672Q499Z4 452 aaPredicted RBP7.84□□□□□ -1.15
COL6A3-201ENST00000295550 C8orf31Q8N9H6 132 aa7.84□□□□□ -1.15
COL6A3-201ENST00000295550 PCP2Q8IVA1 136 aa7.84□□□□□ -1.15
COL6A3-201ENST00000295550 XCL2Q9UBD3 114 aa7.84□□□□□ -1.15
COL6A3-201ENST00000295550 KIR2DL5BA0A0G2JN68 375 aa7.84□□□□□ -1.15
COL6A3-201ENST00000295550 KIR2DL5BA0A0G2JPC4 375 aa7.84□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 61.7 ms